Programs

• diffusion_1D_multistate

Estimates a 1D diffusion model with chemical-state-dependent free energy profile from simulation/single-molecule trajectories. https://github.com/OkazakiLab/diffusion_1D_multistate

• Go-MARTINI

The modified script to construct a Go-MARTINI system. https://github.com/OkazakiLab/Go-MARTINI

Clusters

• CPU+GPU nodes ( 16 nodes of Intel Xeon E5-2690v4(2.6GHz)×2CPU (28 cores) and NVIDIA GTX 1080Ti 11GB×2 )

• File server