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Biomolecular machines such as molecular motors and transporters are nano-machines developed by nature. In order to understand their mechanisms and control their functions, we elucidate the dynamics of biomolecular machines in function by molecular simulations and other theoretical/computational methods.
Biomolecular machines such as molecular motors and transporters are nano-machines developed by nature. In order to understand their mechanisms and control their functions, we elucidate the dynamics of biomolecular machines in function by molecular simulations and other theoretical/computational methods.
Biomolecular machines, Molecular simulations, Multiscale models, Mathematical models
Recent news
Recent news
2025 Sept. 16 Our preprint on membrane constriction by dynamin was uploaded: https://www.biorxiv.org/content/10.1101/2025.09.09.675253v1
2025 May 27 Our paper on IF1 inhibition of F1-ATPase has been published in JACS Au. https://pubs.acs.org/doi/10.1021/jacsau.5c00261
2025 Apr. 1 Constantin joined our group.
2025 Mar. 14 Our paper on reaction coordinates is published: https://doi.org/10.1063/5.0252631
Year 2024
2024 Nov. 21 Our preprint on IF1 inhibition of F1 motor was uploaded: https://www.biorxiv.org/content/10.1101/2024.11.19.621789v1
2024 Nov. 20 Our paper on Vo motor was published: https://www.nature.com/articles/s41467-024-53504-x
2024 July 29 Our paper on integrated AlphaFold and MD approach is published: https://pubs.acs.org/doi/full/10.1021/acs.jpcb.4c02726
2024 May 2 Our paper on reaction coordinates is published: https://pubs.aip.org/aip/jcp/article/160/17/174110/3287808/Unveiling-interatomic-distances-influencing-the
2024 Mar. 22 Our paper on a biosensor is published: https://pubs.acs.org/doi/10.1021/acssensors.3c02398
2024 Jan. 12 Our new paper on oxalate transporter is published: https://pubs.acs.org/doi/10.1021/acs.jpclett.3c03052
Year 2023
2023 Oct. 27 Our new preprint on oxalate transporter is on bioRxiv. https://www.biorxiv.org/content/10.1101/2023.10.26.564285v1
2023 Oct. 8 Dr. Okazaki gave an invited talk at ICMS 2023 in Taipei, Taiwan
2023 Aug. 16 Collaboration work on a biosensor is published at Int. J. Mol. Sci. https://www.mdpi.com/1422-0067/24/16/12865
2023 Jul. 11 Dr. Okazaki gave an invited talk at 9th Annual CCPBioSim Conference.
2023 Apr. 11 Editorial of the research topic at Frontiers in Chemistry, where Dr. Okazaki served as a co-editor, is published https://www.frontiersin.org/articles/10.3389/fchem.2023.1200409/full
2023 Apr. 10 Constantin Guyot (Chimie ParisTech - ENSCP) joined the group as an intern student.
2023 Apr. 3 Collaboration work on oxalate transporter is published at Nat. Commun. https://www.nature.com/articles/s41467-023-36883-5
2023 Mar. 31 Dr. Kobayashi's work on the inhibitory factor of ATP synthase is published at Nat. Commun. https://doi.org/10.1038/s41467-023-37182-9
2023 Feb. 7 Dr. Okazaki gave an invited talk at The 5th R-CCS International Symposium: Fugaku and Beyond.
2023 Jan. 3 Opinion paper published at PNAS https://doi.org/10.1073/pnas.2214423119
Year 2022
2022 July 26 Dr. Okazaki gave a talk at Telluride workshop (Coarse-Grained Modeling).
2022 May 23 Dr. Kobayashi joined the group.
2022 Apr. 21 Our research is featured in a press release. https://www.ims.ac.jp/news/2022/04/0421.html
2022 Apr. 18 Dr. Mahmood joined the group.
2022 Feb. 16 Dr. Ohnuki joined the group.
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