Publications

Říhová, J., Gupta, S., Novakova, E., Darby, A., & Hypša, V. (2023). Arsenophonus symbiosis with louse flies: multiple origins, coevolutionary dynamics, and metabolic significance. bioRxiv, 2023-07.

Siozios, S., Nadal Jimenez, P., Azagi, T., Sprong, H., Frost, C. L., Parratt, S. R., Graeme Taylor,  Laura Brettell, Kwee Chin Liew, Larry Croft,  Kayla C King,  Michael A Brockhurst,  Václav Hypša,  Eva Novakova,  Alistair C Darby, & Hurst, G. D. (2023). Genome dynamics across the evolutionary transition to endosymbiosis. bioRxiv, 2023-05.

Dittmer, J., Corretto, E., Starhova-Serbina, L., Michalik, A., Nováková, E., & Schuler, H. (2023). Division of labour within psyllids: Metagenomics reveals an ancient dual endosymbiosis with metabolic complementarity in the genus Cacopsylla. bioRxiv, 2023-04.

Tarabai, H., Floriano, A. M., Zima Jr, J., Filová, N., Brown, J. J., Roachell, W., ... & Nováková, E. (2023). Microbiomes of Blood-Feeding Triatomines in the Context of Their Predatory Relatives and the Environment. Microbiology Spectrum, e01681-23.

Brown, J. J., Jandová, A., Jeffs, C. T., Higgie, M., Nováková, E., Lewis, O. T., & Hrček, J. (2023). Microbiome structure of a wild Drosophila community along tropical elevational gradients and comparison to laboratory lines. Applied and Environmental Microbiology, 89(5), e00099-23.

Němečková, K., Mareš, J., Procházková, L., Culka, A., Košek, F., Wierzchos, J., Linda Nedbalová, Jan Dudák, Veronika Tymlová, Jan Žemlička, Andreja Kust, Jan Zima, Eva Nováková & Jehlička, J. (2023). Gypsum endolithic phototrophs under moderate climate (Southern Sicily): their diversity and pigment composition. Frontiers in Microbiology, 14.

Mahmood, S., Nováková, E., Martinů, J., Sychra, O., & Hypša, V. (2023). Supergroup F Wolbachia with extremely reduced genome: transition to obligate insect symbionts. Microbiome, 11(1), 22.

Serbina, L. Š., Gajski, D., Pafčo, B., Zurek, L., Malenovský, I., Nováková, E., ... & Dittmer, J. (2022). Microbiome of pear psyllids: A tale about closely related species sharing their endosymbionts. Environmental Microbiology, 1462-2920.

Říhová, J., Bell, K. C., Nováková, E., & Hypša, V. (2022). Lightella neohaematopini: A new lineage of highly reduced endosymbionts coevolving with chipmunk lice of the genus Neohaematopinus. Frontiers in Microbiology, 13, 900312.

Říhová, J., Batani, G., Rodríguez‐Ruano, S. M., Martinů, J., Vácha, F., Nováková, E., & Hypša, V. (2021). A new symbiotic lineage related to Neisseria and Snodgrassella arises from the dynamic and diverse microbiomes in sucking lice. Molecular Ecology, 30(9), 2178-2196. doi: 10.1111/mec.15866 

Martinů, J., Štefka, J., Poosakkannu, A., & Hypša, V. (2020). “Parasite turnover zone” at secondary contact: A new pattern in host–parasite population genetics. Molecular Ecology, 29(23), 4653-4664. doi: 10.1111/mec.15653 

Brown, J. J., Rodríguez-Ruano, S. M., Poosakkannu, A., Batani, G., Schmidt, J. O., Roachell, W., ... & Nováková, E. (2020). Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae). Microbiome, 8(1), 1-16.  doi: 10.1186/s40168-020-00921-x 

Rodríguez-Ruano, S. M., Juhaňáková, E., Vávra, J., & Nováková, E. (2020). Methodological insight into mosquito microbiome studies. Frontiers in cellular and infection microbiology, 10, 86. doi: 10.3389/fcimb.2020.00086

Song, S.J., Sanders, J.G., Baldassarre, D.T., Chaves, J.A., Johnson, N.S., Piaggio, A.J., Stuckey, M.J., Nováková, E., Metcalf, J.L., Chomel, B.B. and Aguilar-Setién, A.. (2019). Is there convergence of gut microbes in blood-feeding vertebrates?. Philosophical Transactions of the Royal Society B, 374(1777), 20180249. do:10.1098/rstb.2018.0249

Rodríguez-Ruano, S. M., Martín-Vivaldi, M., Peralta-Sánchez, J., García-Martín, A., Martínez-García, Á., Soler, J., et al. (2018). Seasonal and sexual differences in the microbiota of the hoopoe uropygial secretion. Genes, 9: 407. doi:10.3390/genes9080407.

Rodríguez-Ruano S. M., Škochová V., Rego R. O. M., Schmidt J. O., Roachell W., Hypša V., Nováková E. 2018. Microbiomes of North American Triatominae: The grounds for Chagas disease epidemiology. Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.01167.

Păstrav, I. R., Ionică, A. M., Peştean, C., Novakova, E., Modrý, D., & Mihalca, A. D. (2018). Peripheral venous vs. capillary microfilariaemia in a dog co-infected with Dirofilaria repens and D. immitis: A comparative approach using triatomine bugs for blood collection. Veterinary parasitology, 257, 54-57.

Šochová E., Husník F., Nováková E., Halajian A., Hypša V. 2017. Arsenophonus and Sodalis replacements shape evolution of symbiosis in louse flies. PeerJ 5. doi:10.7717/peerj.4099.

Pistone D., Pajoro M., Novakova E., Vicari N., Gaiardelli C., Viganò R., Luzzago C., Montagna M., Lanfranchi P. 2017. Ticks and bacterial tick-borne pathogens in Piemonte region, Northwest Italy. Experimental and Applied Acarology, Epub ahead of print. doi: 10.1007/s10493-017-0202-2. 

Říhová J., Nováková E., Husník F., Hypša V. 2017. Legionella becoming a mutualist: Adaptive processes shaping the genome of symbiont in the louse Polyplax serrata. Genome Biology and Evolution, Epub ahead of print. doi: 10.1093/gbe/evx217.

Novakova E., Woodhams D. C. W., Rodriguez-Ruano S. M., Brucker R. M., Leff J. W., Maharaj A., Amir A., Rob Knight R., Scott J. 2017. Mosquito microbiome dynamics, a background for prevalence and seasonality of West Nile Virus. Frontiers in Microbiology, 8: 526. doi: 10.3389/fmicb.2017.00526.

Thairu M. W., Skidmore I. H., Bansal R., Nováková E., Hansen T. E., Li‐Byarlay H., Wickline S. A., Hansen A. K. 2017. Efficacy of RNA interference knockdown using aerosolized short interfering RNAs bound to nanoparticles in three diverse aphid species. Insect Molecular Biology. doi: 10.1111/imb.12301 

Nováková E., Hypša V., Nguyen P., Husník F., Darby A.C. 2016. Genome sequence of Candidatus Arsenophonus lipopteni, the exclusive symbiont of a blood sucking fly Lipoptena cervi (Diptera: Hippoboscidae). Standards in Genomic Sciences, 11: 72.

Nováková E., Husník F., Šochová E. and Hypša V.. 2015. Arsenophonus and Sodalis symbionts in louse flies: An analogy to the Wigglesworthia and Sodalis system in tsetse flies. Applied and Environmental Microbiology 81(18): 6189–6199.

Nováková E., Hypša V., Klein J., Foottit R.G., Dohlen C.D., Moran N.A. 2013. Reconstructing the phylogeny of aphids (Hemiptera: Aphididae) using DNA of the obligate symbiont Buchnera aphidicola. Molecular Phylogenetics and Evolution 68: 42-54.

Chrudimský T., Husník F., Nováková E. and Hypša V., 2012. Candidatus Sodalis melophagi sp. nov.: phylogenetically independent comparative model to the tsetse fly symbiont Sodalis glossinidius. PLoS ONE 7(7): e40354.

Nováková E. and Moran N.A., 2012. Diversification of genes for carotenoid biosynthesis in aphids following an ancient transfer from a fungus. Molecular Biology and Evolution29: 313-323

Wilkes T.E., Duron O., Darby A.C., Hypša V., Nováková E. and Hurst G.D.D., 2011. The genus Arsenophonus. In: E Zchori-Fein & K Bourtzis ed(s). Manipulative Tenants. New York, CRC Press, pp 225-241.

Nováková E., Hypša V., Moran N.A., 2009. Arsenophonus, an emerging clade of intracellular symbionts with a broad host distribution. BMC Microbiology 9: 143.

Hypša V., and Nováková E., 2008. Insect symionts and molecular phylogenetics. In: Insect Symbiosis, Volume 3. Eds. K. Bourtzis and T. A Miller. CRC Press, pp 1-22.

Nováková E., and Hypša V., 2007. A new Sodalis lineage from bloodsucking fly Craterina melbae (Diptera, Hippoboscoidea) originated independently of the tsetse flies symbiont Sodalis glossinidius. FEMS Microbiology Letters 269: 131-135.