Konstantin Ivanov Intercontinental Magnetic Resonance Seminar

Zoom Meeting (https://us02web.zoom.us/j/88092898049?pwd=MGhtTjlrcGRLWHhoWi9sR3VpTFl4UT09)

Day: Friday

Time: 12:00 (Berlin/Paris), 15:30 (India), 17:00 (Novosibirsk)

Past Talk Details:



    References: [1] Weber et al. Anal. Chem. 2019; [2] Epasto et al. Anal. Chem. 2021; [3] Ramnarain et al. JACS 2022

Main features are:

(1) Compact, plug-and-play hardware. A credit-card-sized circuit board contains all electronic components and connects to any laptop, desktop or raspberry Pi computer via USB. Includes pulse programmer and analog sampling up to 100 kHz, suitable for mT-field NMR.

(2) Transparent, intuitive control interface. User-specific pulse sequences (2 us time resolution) can be written to control both DC and AC magnetic fields up to several hundred kHz. Open access to low-level programming interface for advanced users.

(3) Flexible. Can be connected to conventional rf-inductive pickup coils, or alternative sensors such as atomic magnetometers. 

K. Griffiths, N. R. Halcovitch, J. M. Griffin, Chem. Mater. 2020, 32, 9925-9936.

K. Griffiths, N. R. Halcovitch, J. M. Griffin, Chem. Sci. 2022, 13, 3014-3019. 

     -First, we measured the spectrum of this double-well system as a function of its barrier high. We see the quantum energy levels kissing (coalescing) in pairs, while they tunnel-degenerate as they sink under the barrier. This is the first observation of this physics-textbook example, to the best of our knowledge.

-The second observation is the measurement of the incoherent thermal-induced reaction-rate in between the wells as a function of the barrier height. One may naively expect an exponential reduction of the well-switching rate, but what we find is that the rate decreases in steps instead. This is due to the discrete capture of the quantum states by the wells: effectively, the depth of the well can be measured by the number of states that fit within, and only as a new state sinks under the barrier the wells become "deeper". This makes the reaction-rate a stepped function of the barrier height. This new quantum regime of Kramers's theory was neither predicted nor observed before, to the best of our knowledge. In this talk, I will give a friendly introduction to superconducting quantum circuits making the talk transparent to anyone having elementary training in quantum mechanics.

References:

1. Y. Rao, et al. J. Phys. Chem. C 2022, 126, 27, 11310-11317.

2. Y. Rao, et al. J. Phys. Chem. Lett. 2022, 13, 7749-7755.

[1] M. Suefke, S. Lehmkuhl, A. Liebisch, B. Bluemich, S. Appelt, Nat. Phys. 13, 568 (2017).

[2] S. Appelt, A. Kentner, S. Lehmkuhl, B. Blümich, Prog. Nucl. Magn. Reson. Spectrosc. 114-115, 1 (2019).

[3] S. Lehmkuhl, S. Fleischer, L. Lohmann, M. S. Rosen, E. Y. Chekmenev, A. Adams, T. Theis, S. Appelt, RASER MRI: Magnetic Resonance Images formed Spontaneously exploiting Cooperative Nonlinear Interaction, Sci. Adv. 8, eabp8483 (2022) .

References

[1] R. Kircher, H. Hasse, K. Münnemann, Analytical Chemistry 93, 25, 8897–8905 (2021).

[2] D. Sezer, M.J. Prandolini, T.F. Prisner, Physical chemistry chemical physics 11 (31), 6626-6637 (2009).

A special focus of my talk will lie on a large oligomeric bacterial DnaB helicase involved in unwinding double-stranded DNA during DNA replication, which we trap for NMR and EPR studies in its “transition state” of ATP hydrolysis using ADP:AlF 4- . 31 P, 1 H correlation experiments at fast MAS allow distinguishing in an interaction-specific manner between different protein-DNA binding modes. Introducing phosphorus-31 in proton-detected fast MAS experiments has also allowed us to investigate phosphane and phosphonium compounds related to the still emerging field of Frustrated Lewis Pair chemistry.

References:

[1] M. Pujari-Palmer, H. Guo, D. Wenner, H. Autefage, C. D. Spicer, M. M. Stevens, O. Omar, P. Thomsen, M. Edén, G. Insley, P. Procter, H. Engqvist, Materials 11, 2492 (2018).

[2] R. Mathew M. Pujari-Palmer, H. Guo, Y. Yu, B. Stevensson, H. Engqvist, M. Edén, J. Phys. Chem. C, 124, 21512 (2020)

First, we are going to explore how B0 field inhomogeneity affects highly resolved 2D correlation NMR spectra and how the reference deconvolution method can be implemented to improve the lineshape. Second, we will present the possibility to use the total lineshape analysis for the multiplets extracted from 2D spectra. This possibility will be illustrated for an androstene molecule containing 20 coupled 1H spins. All the signals coming from these 20 spins fall in the spectral region with a bandwidth of ca. 1 ppm and the total lineshape analysis of 1D 1H NMR spectrum is therefore challenging. The problem of signal overlap is solved using 2D spectroscopy. Here we used a “pure shift method” where a broadband homonuclear decoupling was performed along the F1-axis, and the multiplet structure was conserved along the F2-axis. The extracted 1D crossections with multiplets from this 2D spectrum allowed us to find all the J-couplings in the system using the total lineshape analysis.

-  Cathodes: We will illustrate how paramagnetic solid-state NMR can be successfully implemented using a combination of fast MAS (>50 kHz) and low field magnets (200 MHz), allowing the accurate analysis of even very strong paramagnetic cathode materials. In particular, the topics presented will illustrate how this technique was applied in our laboratory to the characterization of: ion dynamics 1 , dopants 2,3 , structural defects 4 , cathode decomposition 5 and the presence of irreversible phases 6 .

-  Anodes: The solid-state NMR analysis of Li containing alloys will be briefly described. It will be illustrated how the Knight shifts governing the NMR spectra of metals can be used in the structural and dynamic analysis of these compounds and how solid-state NMR can accurately detect the presence of Li dendrites 7 .

-  Solid electrolytes: The NMR research carried out in several ultrafast ceramic ionic conductors will be briefly presented. 8,9 In these cases, solid state NMR was used in the structural characterization of the solid materials and to understand and follow the mechanism of material degradation. These results were used to design processes that significantly improved the Li + conductivity. Solid state NMR was also used to detect the Li + exchange process between the ceramic and polymer phases in a solid composite material 10 .

References:

1 E Gonzalo, M Zarrabeitia, N Drewett, J M López del Amo, T Rojo Energy Storage Materials 2021, 34, 682-707

2 L Yang, J M López del Amo, Z Shadike, S Bak, F Bonilla, M Galceran, P Kumar Nayak, J Buchheim, X Yang, T Rojo, P Adelhelm Advanced Functional Materials 2020, 30 (42), 2003364

3 L Yang, L‐Y Kuo, J M López del Amo, P Kumar Nayak, K A Mazzio, S Maletti, D Mikhailova, L Giebeler, P Kaghazchi, T Rojo, P Adelhelm Advanced Functional Materials 2021, https://doi.org/10.1002/adfm.202102939

     4 J Sevillano, D Carlier, A Saracibar, J M Lopez del Amo and M Casas Inorg. Chem. 2019, 58, 13, 8347–8356.

5 M Huon Han, E Gonzalo, N Sharma, J M López del Amo, M Armand, M Avdeev, J Saiz Garitaonandia, T Rojo Chemistry of Materials 2016, 28, 106.

6 N Ortiz-Vitoriano, I Monterrubio, L Garcia-Quintana, J M Lopez del Amo, F Chen, T Rojo, P C Howlett, M Forsyth, C Pozo-Gonzalo ACS Energy Letters 2020, 5, 3, 903–909

7 F Aguesse, W Manalastas, L Buannic, J M Lopez del Amo, G Singh, A Llordés, J Kilner ACS Applied Materials & Interfaces 2017, 9(4), 3808-3816.

8 P López-Aranguren, M Reynaud, P Głuchowski, A Bustinza, M Galceran, J M López del Amo, M Armand, M Casas-Cabanas ACS Energy Letters 2021, 6, 2, 445–450

9 L Buannic, B Orayech, J M Lopez Del Amo, J Carrasco, N A Katcho, F Aguesse, W Manalastas, W Zhang, J Kilner, A Llordés Chemistry of Materials 2017, 29(4), 1769-1778.

10 J Zagórski, J M López del Amo, M J Cordill, F Aguesse, L Buannic, A Llordés ACS Applied Energy Materials 2019, 2(3), 1734-1746

[1] P. Vallurupalli, A. Sekhar, T. Yuwen, L. E. Kay, Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer. J. Biomol. NMR 67 (2017) 243-271.

[2] T. Yuwen, A. Sekhar, L. E. Kay, Separating dipolar and chemical exchange magnetization transfer processes in 1H-CEST. Angew. Chem. Int. Ed. 56 (2017) 6122-6125.

[3] T. Yuwen, L. E. Kay, A new class of CEST experiment based on selecting different magnetization components at the start and end of the CEST relaxation element: an application to 1H CEST. J. Biomol. NMR 70 (2018) 93-102.

[4] T. Yuwen, G. Bouvignies, L. E. Kay, Exploring methods to expedite the recording of CEST datasets using selective pulse excitation. J Magn. Reson. 292 (2018) 1-7.

This integrated approach is then applied to the autophagy-related protein GABARAP in its cytosolic form, elucidating its dynamics on the pico- to nanosecond timescale and its rotational and translational diffusion for protein concentrations spanning nine orders of magnitude. We compare the dynamics of GABARAP as monitored by 15N spin relaxation of the backbone amide groups, fluorescence anisotropy decays and fluorescence correlation spectroscopy of side chains labeled with BODIPY FL, and molecular movies of the protein from MD simulations. The recovered parameters agree very well between the distinct techniques if the different measurement conditions (probe localization, sample concentration) are taken into account. Order parameters lower than the average value identify residues 27/28 at the interface between the two sub-domains of GABARAP as a potential hinge for functionally relevant intra-domain motions. In conclusion, the integrated concept of cross-fertilizing techniques is fundamental to obtaining a comprehensive quantitative picture of multi-scale protein dynamics and solvation. The possibility to employ these validated techniques under cellular conditions and combine them with fluorescence imaging opens up the perspective of studying the functional dynamics of proteins in live cells.

First, we show how narrower 1H spectra can be obtained from a simple 2D scheme that generates correlations exclusively in which the coupling partners have all flipped their spin states, i.e., correlations between so-called remote transitions. Specifically, we show that the residual broadening under MAS in a multi-spin system with different chemical shifts is due to a combination of second order shifts and splittings, and that these splittings will be removed in a 45° projection of an anti-z-COSY spectrum. Results obtained with the anti-z-COSY sequence at 100 kHz show an improvement in resolution of up to a factor of two compared to conventional spectra acquired at the same spinning rate.

Secondly, we suggest that instead of optimizing and perfecting a coherent averaging scheme, we could approach the problem by parametrically mapping the error terms due to imperfect averaging in a k-space representation, in such a way that they can be removed in a multi-dimensional correlation leaving only the desired pure isotropic signal. Here we illustrate the approach by determining pure isotropic 1H spectra from a series of MAS spectra acquired at different spinning rates. For six different organic solids we observe on average a 5-fold increase in resolution, and up to a factor of 12, as compared with spectra acquired at 100 kHz MAS.

The approaches presented here are directly applicable to a range of solids and we anticipate that they can be widely applied in the future.



In this talk, the applicability of a phase-modulated (PM) pulse to quadrupolar nuclei is discussed in two cases – distance determination and relaxation measurements. In the first part, the distance measurement PM-RESPDOR experiment will be demonstrated, and the significant efficiency improvement in relation to other methods will be discussed. Distance measurements between spin pairs with small (<25 MHz) differences in their LARMOR frequency will be addressed as well, showing the split PM-RESPDOR applicability to a 13C-81Br system where 81Br has a quadrupolar coupling of 10.6 MHz. Carbon-bromine bonds are prevalent in pharmaceuticals, organo-catalysts and other compounds, and the usage potential is great. Additional spin-pairs that can benefit from the split-PM RESPDOR experiment are 13C-51V, 13C-27Al, 13C-45Sc, 117Sn-11B, especially for large (>5 MHz) quadrupolar frequencies. In the second part of the talk, the PM pulse will be suggested as the saturation pulse of choice for measuring quadrupolar spin-lattice relaxation times. Its applicability will be demonstrated on 11B, where the quadrupolar frequency is 1.55 MHz, and then the PM pulse will be combined with an indirect (1H) detection approach and relaxation measurements of 14N (nQ=1.9 MHz) and 81Br (nQ=5.3 MHz) will be shown for cases when ‘direct’ quadrupolar spectra couldn’t be acquired at all under spinning conditions.

References:

1. M. Makrinich, R. Gupta, T. Polenova, and A. Goldbourt, Solid State Nucl. Magn. Reson., vol. 84, pp. 196–203, 2017.

2. M. Makrinich, E. Nimerovsky, and A. Goldbourt, Solid State Nucl. Magn. Reson., vol. 92, pp. 19–24, 2018.

3. M. Makrinich, A. Goldbourt, Chem. Commun., 55, 5643-5646 (2019).

4. M. Makrinich, M. Sambol, A. Goldbourt, Phys. Chem. Chem. Phys.,22, 21022-21030, (2020)




[1]  J. Wack, R. Siegel, T. Ahnfeldt, N. Stock, L. Mafra, J. Senker, J. Phys. Chem. C 117 (2013), 19991.

[2]  S. Henke, A. Schneemann, R. A. Fischer, Adv. Funct. Mater. 23 (2013), 5990.

[3]  C. S. Zehe, R. Siegel, J. Senker, In Handbook of Solid State Chemistry; Wiley-VCH, 3 (2017), pp 245–277.

References

[1] C. O. Bretschneider, G. A. Alvarez, G. Kurizki, L. Frydman, Phys. Rev. Lett. 2012, 108, 1–5.

[2] M. Novakovic, S. F. Cousin, M. J. Jaroszewicz, R. Rosenzweig, L. Frydman, J. Magn. Reson. 2018, 294, 169–180.

[3] M. Novakovic, Ē. Kupče, A. Oxenfarth, M. D. Battistel, I. Darón, H. Schwalbe, L. Frydman, 2020, arXiv:2004.13063.

1. We report in-situ solid-state NMR measurements of a magnetically oriented microcrystal suspension (MOMS). Under modulated rotation of a static field, or nearly equivalently, of the sample tube in the static field fixed in the laboratory, randomly oriented microcrystals in a viscous liquid medium feel a torque arising from the anisotropic bulk susceptibility in such a way that the individual microcrystals are eventually aligned in the same direction. A three-dimensional MOMS (3D-MOMS) obtained in this way gives NMR spectra corresponding to single-crystal (SC) rotation patterns when the pulse excitation is triggered in synchronous with the sample-tube rotation with varuous delay times. Unlike the traditional SC method, the 3D-MOMS approach presented here does not require elaborate and often impossible crystal growth. We discuss potential applications as well as limitation of MOMS NMR.

2. A particle with a spin angular momentum in an inertial frame of reference acquires an extra energy in a non-inertial frame rotating with respect to the former due to the spin-rotation coupling. As a consequence, the spin system is magnetized as if it were exposed to a magnetic field. Development of the magnetization by rotation was first observed by Barnett in 1915 in a rotating ferromagnetic body. Very recently, the Barnett effect was also reported for paramagnetic electron spins as well as for nuclear spins. Here, we explore the possibility of exciting/detecting NMR through the alternating Barnett field in the presence of a polarizing static field.

[1] P. Cerreia-Vioglio, G. Mollica, M. Juramy, C.E. Hughes, P.A. Williams, F. Ziarelli, S. Viel, P. Thureau, K.D.M. Harris, Angew. Chem. Int. Ed. 2018, 57, 6619.

[2] P. Cerreia-Vioglio, P. Thureau, M. Juramy, F. Ziarelli, S. Viel, P.A. Williams, C.E. Hughes, K.D.M. Harris, G. Mollica J. Phys. Chem. Lett. 2019, 10, 1505

Literature:

[1] O.B. Lapina et al., Catal. Today. 2003, 78, 91-104.

[2] M. de Oliveira Jr. et al., Catal. Sci. Technol. 2019, 9, 6180-6190.

[3] A. Lesage et al., J. Amer. Chem. Soc. 2010, 132, 15459-15461.

[4] A. S. L. Thankamony et al., J. Phys. Chem. C 2017, 121, 20857-20864.

[5] V. Klimavicius et al., Catal. Sci. Technol. 2019,9, 3743-3752.



 

References:

[1] B. Kumari et al., The Journal of Physical Chemistry C, 2018, 122, 19540-19550

[2] B. Kumari et al., Applied Magnetic Resonance, 2019, 50, 1399-1407

[3] B. Kumari et al., Z. Phys. Chem, 2018, Vol. 232, p 1173

[4] T. Gutmann et al., The Journal of Physical Chemistry C, 2017, 121 (7), 3896-3903.






 Konstantin Ivanov intercontinental magnetic resonance seminar series is organised by Gerd Buntkowsky, TU Darmstadt, Germany, Daniel Abergel, ENS Paris, France, and P. K. Madhu, TIFR Hyderabad, India. Please contact any one of the organisers if you have any suggestions for improving the seminar series and/or with names of prospective speakers.