Mordhorst, L., Morozova, M., Papazoglou, S., Fricke, B., Oeschger, J. M., Tabarin, T., Rusch, H., Jäger, C., Geyer, S., Weiskopf, N., Morawski, M., & Mohammadi, S. Towards a representative reference for MRI-based human axon radius assessment using light microscopy. Neuroimage 249:118906 (2022).
Weiskopf, N., Edwards, L.J., Helms, G., Mohammadi, S., Kirilina, E. (2021) Quantitative magnetic resonance imaging of brain anatomy and in vivo histology. Nat Rev Phys:1–19.
Mohammadi S, Callaghan MF (2021) Towards in vivo g-ratio mapping using MRI: Unifying myelin and diffusion imaging. Journal of Neuroscience Methods 348:108990.
Tabelow, K., Balteau, E., Ashburner, J., Callaghan, M. F., Draganski, B., Helms, G., Kherif, F., Leutritz, T., Lutti, A., Phillips, C., Reimer, E., Ruthotto, L., Seif, M., Weiskopf, N., Ziegler, G., & Mohammadi, S. hMRI – a toolbox for quantitative MRI in neuroscience and clinical research. Neuroimage 194, 191–210 (2019).
Mohammadi, S., Carey, D., Dick, F., Diedrichsen, J., Sereno, M., Reisert, M., Callaghan, M., & Weiskopf, N. Whole-brain in-vivo measurements of the axonal g-ratio in a group of 37 healthy volunteers. Front Neurosci 9:441 (2015).
Mohammadi S, Carey D, Dick F, Diedrichsen J, Sereno MI, Reisert M, Callaghan MF and Weiskopf N (2015), Frontiers in Brain Imaging Methods, Whole-brain in-vivo measurements of the axonal g-ratio in a group of 37 healthy volunteers, 9: 00441, doi: 10.3389/fnins.2015.00441.
Mohammadi S, Tabelow K, Ruthotto L, Feiweier T, Polzehl J, Weiskopf N (2015) High-resolution diffusion kurtosis imaging at 3T enabled by advanced post-processing. Frontiers in Brain Imaging Methods 8:427,
N Weiskopf, S Mohammadi, A Lutti, MF Callaghan (2015) Advances in MRI-based computational neuroanatomy: from morphometry to in-vivo histology, Curr Opin Neurol. 28(4):313-22., doi: 10.1097/WCO.000000000000022
Edwards LJ, Pine KJ, Ellerbrock I, Weiskopf N, Mohammadi S (2017) NODDI-DTI: Estimating Neurite Orientation and Dispersion Parameters from a Diffusion Tensor in Healthy White Matter. Front Neurosci 11:720. doi: 10.3389/fnins.2017.00720.
Mohammadi S., Streubel T., Klock L., Edwards L.J., Lutti A., Pine K.J., Weber S., Scheibe P., Ziegler G., Gallinat J., Kühn S., Callaghan M.F., Weiskopf N., Tabelow K. Error quantification in multi-parameter mapping facilitates robust estimation and enhanced group level sensitivity. Neuroimage 262:119529 (2022). Method for robust quantitative relaxometry, proton density, and magnetization transfer saturation imaging.
Papazoglou, S., Streubel, T., Ashtarayeh, M., Pine, K. J., Edwards, L. J., Brammerloh, M., Kirilina, E., Morawski, M., Jäger, C., Geyer, S., Callaghan, M. F., Weiskopf, N., & Mohammadi, S. Biophysically motivated efficient estimation of the spatially isotropic component from a single gradient-recalled echo measurement. MRM Editor’s picks of 11/2019
Edwards, L. J., Pine, K. J., Ellerbrock, I., Weiskopf, N., & Mohammadi, S. NODDI-DTI: Estimating neurite orientation and dispersion parameters from a diffusion tensor in healthy white matter. Front Neurosci 11:720 (2017).
Weiskopf N, Callaghan M, Josephs O, Lutti A, Mohammadi S (2014) Estimating the apparent transverse relaxation time (R2*) from images with different contrasts (ESTATICS) reduces motion artifacts. Brain Imaging Methods 8:278, doi: 10.3389/fnins.2014.00278.).
Mohammadi S, Möller HE, Kugel H, Müller DK, Deppe M (2010) Correcting eddy current and motion effects by affine whole-brain registrations: evaluation of three-dimensional distortions and comparison with slicewise correction. Magn Reson Med 64:1047–1056.
David, G., Mohammadi, S., Martin, A. R., Cohen-Adad, J., Weiskopf, N., Thompson, A., & Freund, P. (2019). Traumatic and nontraumatic spinal cord injury: pathological insights from neuroimaging. Nature Reviews Neurology, 1–14.
Mohammadi S, Freund P, Feiweier T, Curt A, Weiskopf N (2013) The impact of post-processing on spinal cord diffusion tensor imaging. Neuroimage 70:377–385
David G, Freund P, Mohammadi S (accepted) The efficiency of retrospective artifact correction methods in improving the statistical power of between-group differences in spinal cord DTI. NeuroImage.