Code

GitHub Vignette:

https://github.com/vishalmidya/MiCA-Microbial-Co-occurrence-Analysis

Citation: 

Midya V, Lane JM, Gennings C, Torres-Olascoaga LA, Wright RO, Arora M, Téllez-Rojo MM, Eggers S. Prenatal Pb exposure is associated with reduced abundance of beneficial gut microbial cliques in late childhood: an investigation using Microbial Co-occurrence Analysis (MiCA). Environmental Science & Technology. October 2023. Doi: 10.1021/acs.est.3c04346. 

GitHub:

https://github.com/ShoshannahE/WQS-Microbiome/

Citation: 

Eggers S, Bixby M, Renzetti S, Curtin P, Gennings C. Human Microbiome Mixture Analysis Using Weighted Quantile Sum Regression. Int J Environ Res Public Health. 2022 Dec 21;20(1). doi: 10.3390/ijerph20010094. PubMed PMID: 36612415; PubMed Central PMCID: PMC9819204.


GitHub:

https://github.com/vishalmidya/WQS_SiRF

Citation: 

Midya V, Alcala CS, Rechtman E, Gregory JK, Kannan K, Hertz-Picciotto I, Teitelbaum SL, Gennings C, Rosa MJ, and Valvi D. Machine Learning Assisted Discovery of Interactions between Pesticides, Phthalates, Phenols, and Trace Elements in Child Neurodevelopment. Environmental Science & Technology. August 2023. Doi: 10.1021/acs.est.3c00848