Publications

For an up-to-date list of publication, see my Google scholar profile.

Publications

Yun Liu, Krishna Gadepalli, Mohammad Norouzi, George E Dahl, Timo Kohlberger, Aleksey Boyko, Subhashini Venugopalan, Aleksei Timofeev, Philip Q Nelson, Greg S Corrado, Jason D Hipp, Lily Peng, Martin C Stumpe. Detecting Cancer Metastases on Gigapixel Pathology Images. arXiv preprint arXiv:1703.02442

Varun Gulshan, Lily Peng, Marc Coram, Martin C Stumpe, Derek Wu, Arunachalam Narayanaswamy, Subhashini Venugopalan, Kasumi Widner, Tom Madams, Jorge Cuadros, Ramasamy Kim, Rajiv Raman, Philip C Nelson, Jessica L Mega, Dale R Webster. Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. JAMA, 316(22), 2402-2410 (2016)

Yair Movshovitz-Attias, Qian Yu, Martin C Stumpe, Vinay Shet, Sacha Arnoud, Liron Yatziv. Ontological supervision for fine grained classification of street view storefronts. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 1693-1702 (2015)

Qian Yu, Christian Szegedy, Martin C Stumpe, Liron Yatziv, Vinay Shet, Julian Ibarz, Sacha Arnoud. Large Scale Business Discovery from Street Level Imagery. arXiv preprint arXiv:1512.05430 (2015)

Martin C. Stumpe, Jeffrey C. Smith, Joseph H. Catanzarite, Jeffrey E. Van Cleve, Jon M. Jenkins, Joseph D. Twicken, Forrest R. Girouard. Multiscale Systematic Error Correction via Wavelet-Based Bandsplitting in Kepler Data. Publications of the Astronomical Society of the Pacific, 126 (935), 100-114 (2014)

Jeffrey C. Smith, Martin C. Stumpe, Jeffrey E. Van Cleve, Jon M. Jenkins, Thomas S. Barclay, Michael N. Fanelli, Forrest R. Girouard, Jeffery J. Kolodziejczak, Sean D. McCauliff, Robert L. Morris, Joseph D. Twicken. Kepler Presearch Data Conditioning II - A Bayesian Approach to Systematic Error Correction. Publications of the Astronomical Society of the Pacific, 124 (119), 1000-1014 (2012)

Martin C. Stumpe, Jeffrey C. Smith, Jeffrey E. Van Cleve, Joseph D. Twicken, Thomas S. Barclay, Michael N. Fanelli, Forrest R. Girouard, Jon M. Jenkins, Jeffery J. Kolodziejczak, Sean D. McCauliff, Robert L. Morris. Kepler Presearch Data Conditioning I - Architecture and Algorithms for Error Correction in Kepler Light Curves. Publications of the Astronomical Society of the Pacific, 124 (119), 985-999 (2012)

Martin C. Stumpe, Nikolay Blinov, David Wishart, Andriy Kovalenko, and Vijay S. Pande. Calculation of Local Water Densities in Biological Systems - A Comparison of Molecular Dynamics Simulations and the 3D-RISM Molecular Theory of Solvation. J. Phys. Chem. B, 115(2), 319-328 (2011) (Cover article)

Maik Goette, Martin C. Stumpe, Ralf Ficner, and Helmut Grubmüller. Molecular Determinants of Snurportin 1 Ligand Affinity and Structural Response upon Binding. Biophys. J., 97(2), 581-589 (2009)

Martin C. Stumpe and Helmut Grubmüller. Urea Impedes the Hydrophobic Collapse of Partially Unfolded Proteins. Biophys. J., 96(9), 3744-3752 (2009)

Martin C. Stumpe and Helmut Grubmüller. Polar or Apolar - The Role of Polarity for Urea-Induced Protein Denaturation. PLoS Comp. Biol., 4(11), e1000221 (2008)

Martin C. Stumpe and Helmut Grubmüller. Interaction of Urea with Amino Acids - Implications for Urea-Induced Protein Denaturation. J. Am. Chem. Soc., 129(51), 16126-16131 (2007)

Martin C. Stumpe and Helmut Grubmüller. Aqueous Urea Solutions: Structure, Energetics, and Urea Aggregation. J. Phys. Chem. B, 111(22), 6220-6228 (2007) (Cover article )

G. Berger, M. Stumpe, M. Höhne, and C. Denz. Reliability of associative recall based on data manipulations in phase encoded volume holographic storage systems. J. Opt. A: Pure Appl. Opt., 7:567-575 (2005)

Publications (AnTracks collaboration papers)

Nigel R Franks, Alan Worley, Katherine AJ Grant, Alice R Gorman, Victoria Vizard, Harriet Plackett, Carolina Doran, Margaret L Gamble, Martin C Stumpe, Ana B Sendova-Franks. Social behaviour and collective motion in plant-animal worms. Proc. R. Soc. B, 283(1825), 20152946 (2016)

Carolina Doran, Martin C Stumpe, Ana Sendova-Franks, Nigel R Franks. Exploration adjustment by ant colonies. Royal Society open science. 3(1), 150533 (2016)

Stefanie M Countryman, Martin C Stumpe, Sam P Crow, Frederick R Adler, Michael J Greene, Merav Vonshak, Deborah M Gordon. Collective search by ants in microgravity. Frontiers in Ecology and Evolution, 3(25) (2015)

Jolle W Jolles, Adeline Fleetwood-Wilson, Shinnosuke Nakayama, Martin C Stumpe, Rufus A Johnstone, Andrea Manica. The role of social attraction and its link with boldness in the collective movements of three-spined sticklebacks. Animal behaviour, 99, 147-153 (2015)

Adam L Cronin, Martin C Stumpe. Ants work harder during consensus decision-making in small groups. Journal of The Royal Society Interface, 11(98), 20140641 (2014)

Jolle W Jolles, Adeline Fleetwood-Wilson, Shinnosuke Nakayama, Martin C Stumpe, Rufus A Johnstone, Andrea Manica. The role of previous social experience on risk-taking and leadership in three-spined sticklebacks. Behav Ecol (2014) 25 (6): 1395-1401

S Nakayama, MC Stumpe, A Manica, RA Johnstone. Experience overrides personality differences in the tendency to follow but not in the tendency to lead. Proceedings of the Royal Society B: Biological Sciences, 280(1769) 20131724 (2013)

Pinter-Wollman, Noa; Bala, Ashwin; Merrell, Andrew; Queirolo, Jovel; Stumpe, Martin C; Holmes, Susan; Gordon, Deborah M. Harvester ants use interactions to regulate forager activation and availability. Proceedings of the Animal Behaviour, 86(1), 197-207 (2013)

Publications (Kepler long authorlist papers)

Peter Tenenbaum, Jessie L. Christiansen, Jon M. Jenkins, Jason F. Rowe, Shawn Seader, Douglas A. Caldwell, Bruce D. Clarke, Jie Li, Elisa V. Quintana, Jeffrey C. Smith, Martin C. Stumpe, Susan E. Thompson, Joseph D. Twicken, Jeffrey Van Cleve, William J. Borucki, Miles T. Cote, Michael R. Haas, Dwight T. Sanderfer, Forrest R. Girouard, Todd C. Klaus, Christopher K. Middour, Bill Wohler, Natalie M. Batalha, Thomas Barclay, and James E. Nickerson. Detection of Potential Transit Signals in the First Three Quarters of Kepler Mission Data. Astrophysical Journal Supplemental Series, 199, 24 (2012)

Thomas N. Gautier III, David Charbonneau, Jason F. Rowe, Geoffrey W. Marcy, Howard Isaacson, Guillermo Torres, Francois Fressin, Leslie A. Rogers, Jean-Michel Désert, Lars A. Buchhave, David W. Latham, Samuel N. Quinn, David R. Ciardi, Daniel C. Fabrycky, Eric B. Ford, Ronald L. Gilliland, Lucianne M. Walkowicz, Stephen T. Bryson, William D. Cochran, Michael Endl, Debra A. Fischer, Steve B. Howel, Elliott P. Horch, Thomas Barclay, Natalie Batalha, William J. Borucki, Jessie L. Christiansen, John C. Geary, Christopher E. Henze, Matthew J. Holman, Khadeejah Ibrahim, Jon M. Jenkins, Karen Kinemuchi, David G. Koch, Jack J. Lissauer, Dwight T. Sanderfer, Dimitar D. Sasselov, Sara Seager, Kathryn Silverio, Jeffrey C. Smith, Martin Still, Martin C. Stumpe, Peter Tenenbaum, Jeffrey Van Cleve. Kepler-20: A Sun-like Star with Three Sub-Neptune Exoplanets and Two Earth-Size Candidates. Astrophysical Journal, 749, 15 (2012)

B. Mosser, M. J. Goupil, K. Belkacem, E. Michel, D. Stello, J. P. Marques, Y. Elsworth, C. Barban, P. G. Beck, T. R. Bedding, J. De Ridder, R. A. Garcya, S. Hekker, T. Kallinger, R. Samadi, M. C. Stumpe, T. Barclay, and C. J. Burke. Red giant core structure and evolution constrained by gravity-dominated mixed modes observed with Kepler. Astronomy & Astrophysics, 540, A143 (2012)

T. Appourchaux, W. J. Chaplin, R. A. Garcya, M. Gruberbauer, G. A. Verner, H. M. Antia, O. Benomar, T. L. Campante, G. R. Davies, S. Deheuvels, R. Handberg, S. Hekker, R. Howe, C. Regulo, D. Salabert, T. R. Bedding, T. R. White, J. Ballot, S. Mathur, V. Silva Aguirre, Y. P. Elsworth, S. Basu, R. Gilliland, J. Christensen-Dalsgaard, H. Kjeldsen, K. Uddin, M. C. Stumpe, and T. Barclay. Oscillation mode frequencies of 61 main-sequence and subgiant stars observed by Kepler. Astronomy & Astrophysics, 543 (2012)

L. A. Balona, M. Breger, G. Catanzaro, M. S. Cunha, G. Handler, Z. Kolaczkoswki, D. W. Kurtz, S. Murphy, E. Niemczura, M. Paparo, B. Smalley, R. Szabo, K. Uytterhoeven, J. L. Christiansen, K. Uddin, M. C. Stumpe. Unusual high-frequency oscillations in the Kepler Scuti star KIC 4840675. Monthly Notices of the Royal Astronomical Society, doi: 10.1111/j.1365-2955.2012.2195.x (2012)

Natalie M. Batalha, Jason F. Rowe, Stephen T. Bryson, Thomas Barclay, Christopher J. Burke, Douglas A. Caldwell, Jessie L. Christiansen, Fergal Mullally, Susan E. Thompson, Timothy M. Brown, Andrea K. Dupree, Daniel C. Fabrycky, Eric B. Ford, Jonathan J. Fortney, Ronald L. Gilliland, Howard Isaacson, David W. Latham, Geoffrey W. Marcy, Samuel Quinn, Darin Ragozzine, Avi Shporer, William J. Borucki, David R. Ciardi, Thomas N. Gautier III, Michael R. Haas, Jon M. Jenkins, David G. Koch, Jack J. Lissauer, William Rapin, Gibor S. Basri, Alan P. Boss, Lars A. Buchhave, David Charbonneau, Joergen Christensen-Dalsgaard, Bruce D. Clarke, William D. Cochran, Brice-Olivier Demory, Edna Devore, Gilbert A. Esquerdo, Mark Everett, Francois Fressin, John C. Geary, Forrest R. Girouard, Alan Gould, Jennifer R. Hall, Matthew J. Holman, Andrew W. Howard, Steve B. Howell, Khadeejah A. Ibrahim, K. Kinemuchi, Hans Kjeldsen, Todd C. Klaus, Jie Li, Philip W. Lucas, Robert L. Morris, Andrej Prsa, Elisa Quintana, Dwight T. Sanderfer, Dimitar Sasselov, Shawn E. Seader, Jeffrey C. Smith, Jason H. Steffen, Martin Still, Martin C. Stumpe, Jill C. Tarter, Peter Tenenbaum, Guillermo Torres, Joseph D. Twicken, Kamal Uddin, Jeffrey Van Cleve, Lucianne Walkowicz, William F. Welsh. Planetary Candidates Observed by Kepler III: Analysis of the First 16 Months of Data. Astrophysical Journal Supplemental Series, 204, 24 (2013)

Jessie L. Christiansen, Jon M. Jenkins, Thomas S. Barclay, Christopher J. Burke, Douglas A. Caldwell, Bruce D. Clarke, Jie Li, Shawn Seader, Jeffrey C. Smith, Martin C. Stumpe, Peter Tenenbaum, Susan E. Thompson, Joseph D. Twicken, Jeffrey Van Cleve. The Derivation, Properties and Value of Kepler's Combined Differential Photometric Precision. Publications of the Astronomical Society of the Pacific, 124 (922), 1279-1287 (2012)

D. Huber, M. J. Ireland, T. R. Bedding, I. M. Brandao, V. Maestro, T. R. White, H. Bruntt, L. Casagrande, J. Molenda-Zakowicz, V. Silva Aguirre, T. Barclay, C. Burke, W. J. Chaplin, J. Christensen-Dalsgaard, M. S. Cunha, J. De Ridder, C. D. Farrington, A. Frasca, R. A. Garcia, R. L. Gilliland, P. J. Goldfinger, S. Hekker, S. D. Kawaler, H. Kjeldsen, H. A. McAlister, T. S. Metcalfe, A. Miglio, M.J.P.F.G. Monteiro, M. H. Pinsonneault, G. H. Schaefer, D. Stello, M. C. Stumpe, J. Sturmann, L. Sturmann, T. A. Ten-Brummelaar, N. Turner, K. Uytterhoeven. Fundamental Properties of Stars Using Asteroseismology From Kepler & Corot and Interferometry from the CHARA Array. Astrophysical Journal, 760, 32 (2013)

Book Chapters & Theses

Del Lucent, Martin C. Stumpe, and Vijay Pande. Chaperonins: The machines which fold proteins. Chapter 5 in Molecular Machines, ISBN 978-9814343442, World Scientific, edited by Benoit Roux (2011).

Martin Stumpe. De natura denaturantium - On the molecular basis of urea-induced protein denaturation. Doktorarbeit (PhD Thesis). Max Planck Institute for Biophysical Chemistry & Georg-August-Universität Göttingen (2007)

Martin Stumpe. Inhaltsadressiertes Auslesen in einem volumenholographischen Speichersystem mit Phasencodierung (Content-based retrieval in a volume-holographic storage system with phase-encoding). Diplomarbeit (Diploma Thesis). Westfälische Wilhelms-Universität Münster (2003)

Invited Talks (selected)

  • 4th Digital Pathology Conference (Global Engage), June 2018, New York, "Advancing Cancer Diagnostics with Artificial Intelligence"
  • AACR (American Association for Cancer Research), Apr 2018 (Plenary), Chicago - "Advancing Cancer Diagnostics with Artificial Intelligence" [video]
  • TriCon Digital Pathology, Feb 2018, San Francisco - "Advancing Cancer Diagnostics with Deep Learning"
  • SPIE Medical Imaging, Feb 2018 (Keynote), Houston - "Advancing Cancer Diagnostics with Deep Learning" [video]
  • JAMIT (Japanese Society of Medical Imaging Technology), Jun 2017 (Keynote), Gifu, Japan - "Deep Learning for Medical Imaging"
  • CVPR (Computer Vision and Pattern Recognition), Jun 2017, Honolulu - "Medical Imaging at Google"
  • MIT Technology Review EmTech, Mar 2017, San Francisco - "AI in Medical Diagnostics" [video]
  • Big Techday 8, June 2015, Munich, Germany - "From Big Data to Big Knowledge" [video]