Publications

Large Language Models with Retrieval-Augmented Generation for Zero-Shot Disease Phenotyping

Will E Thompson, David M Vidmar, Jessica K De Freitas, Gabriel Altay, Kabir Manghnani, Andrew C Nelsen, Kellie Morland, John M Pfeifer, Brandon K Fornwalt, RuiJun Chen, Martin C Stumpe, Riccardo Miotto

NeurIPS 2023, Deep Generative Models for Health (2023)

also: https://arxiv.org/abs/2312.06457

LIFE: A Deep Learning Framework for Laboratory Data Imputation in Electronic Health Records

Samuel P. Heilbroner; Curtis Carter; David M. Vidmar; Erik T. Mueller; Martin C. Stumpe; Riccardo Miotto.

https://www.medrxiv.org/content/10.1101/2023.10.31.23297843 (2023)

Development and Validation of a Deep Learning-Based Microsatellite Instability Predictor from Prostate Cancer Whole-Slide Images

Qiyuan Hu, Abbas A. Rizvi, Geoffery Schau, Kshitij Ingale, Yoni Muller, Rachel Baits, Sebastian Pretzer, Aïcha BenTaieb, Abigail Gordhamer, Roberto Nussenzveig, Adam Cole, Matthew O. Leavitt, Rohan P. Joshi, Nike Beaubier, Martin C. Stumpe, Kunal Nagpal.

npj Precision Oncology volume 8, Article number: 88 (2024)

also https://arxiv.org/abs/2310.08743 (2023)

Prediction of MET Overexpression in Non-Small Cell Lung Adenocarcinomas from Hematoxylin and Eosin Images

Kshitij Ingale, Sun Hae Hong, Josh S.K. Bell, Abbas Rizvi, Amy Welch, Lingdao Sha, Irvin Ho, Kunal Nagpal, Aicha BenTaieb, Rohan P Joshi, Martin C Stumpe.

American Journal of Pathology https://doi.org/10.1016/j.ajpath.2024.02.015 (2024)

also https://arxiv.org/abs/2310.07682 (2023)

Supporting the Application of Computational Pathology in Oncology.

Nick Anderson, J. Carl Barrett, Anne-Laure Bauchet, Vipul Baxi, Nike Beaubier, Daniel N. Cohen, Suzana Couto, Tathagata Dasgupta, Megan Doyle, Dorothy French, Brandon D. Gallas, Emre Gulturk, Mark Gustavson, Sarah Hersey, Kimary Kulig, Alexander Lazar, Jochen K. Lennerz, Mike Montalto, Thomas Mrowiec, Satabhisa Mukhopadhyay, E. Tom Richardson, Roberto Salgado, Alain Silk, Nino Sireci, Martin Stumpe, Jian Wang.

Friends of Cancer Research - White Paper (2023)

Assessing the utility of molecular diagnostic classification for cancers of unknown primary.

Elle C. Moore, Gerard C. Blobe, Nicholas C. DeVito, Brent A. Hanks, Michael R. Harrison, Christopher J. Hoimes, Jingquan Jia, Michael A. Morse, Parvathy Jayaprakasan, Andrew MacKelfresh, Hillary Mulder, Adam J. Hockenberry, Alia Zander, Martin C. Stumpe, Jackson Michuda, Kyle A. Beauchamp, Eric Perakslis, Timothy Taxter, Daniel J. George.

Cancer Medicine https://onlinelibrary.wiley.com/doi/10.1002/cam4.6532 (2023)

Validation of a Transcriptome‑Based Assay for Classifying Cancers of Unknown Primary Origin.

Jackson Michuda, Alessandra Breschi, Joshuah Kapilivsky, Kabir Manghnani, Calvin McCarter, Adam J Hockenberry, Brittany Mineo, Catherine Igartua, Joel T Dudley, Martin C Stumpe, Nike Beaubier, Maryam Shirazi, Ryan Jones, Elizabeth Morency, Kim Blackwell, Justin Guinney, Kyle A Beauchamp, Timothy Taxter.

Molecular Diagnosis & Therapy https://doi.org/10.1007/s40291-023-00650-5 (2023)

also: https://www.medrxiv.org/content/10.1101/2022.05.06.22274683v1 (2022)

Artificial intelligence-augmented histopathologic review using image analysis to optimize DNA yield from formalin-fixed paraffin-embedded slides.

Bolesław L. Osinski, Aïcha BenTaieb, Irvin Ho, Ryan D. Jones, Rohan P. Joshi, Andrew Westley, Michael Carlson, Caleb Willis, Luke Schleicher, Brett M. Mahon, Martin C. Stumpe.

Modern Pathology; https://doi.org/10.1038/s41379-022-01161-0 (2022)

also: https://arxiv.org/abs/2203.13948 (2022)

Imaging-based histological features are predictive of MET alterations in Non-Small Cell Lung Cancer. Rohan P. Joshi, Bo Osinski, Niha Beig, Lingdao Sha, Kshitij Ingale, Martin C. Stumpe.

https://arxiv.org/abs/2203.10062 (2022)

A pan-cancer organoid platform for precision medicine. Brian M. Larsen, Madhavi Kannan, Lee F. Langer, Benjamin D. Leibowitz, Aicha Bentaieb, Andrea Cancino, Igor Dolgalev, Bridgette E. Drummond, Jonathan R. Dry, Chi-Sing Ho, Gaurav Khullar, Benjamin A. Krantz, Brandon Mapes, Kelly E. McKinnon, Jessica Metti, Jason F. Perera, Tim A. Rand, Veronica Sanchez-Freire, Jenna M. Shaxted, Michelle M. Stein, Michael A. Streit, Yi-Hung Carol Tan, Yilin Zhang, Ende Zhao, Jagadish Venkataraman, Martin C. Stumpe, Jeffrey A. Borgia, Ashiq Masood, Daniel V.T. Catenacci, Jeremy V. Mathews, Demirkan B. Gursel, Jian-Jun Wei, Theodore H. Welling, Diane M. Simeone, Kevin P. White, Aly A. Khan, Catherine Igartua, Ameen A. Salahudeen.

Cell Reports 36, 109429, July 27, 2021

Deep Orthogonal Fusion: Multimodal Prognostic Biomarker Discovery Integrating Radiology, Pathology, Genomic, and Clinical Data. Nathaniel Braman, Jacob W. H. Gordon, Emery T. Goossens, Caleb Willis, Martin C. Stumpe, Jagadish Venkataraman.

MICCAI 2021. Lecture Notes in Computer Science, vol 12905. Springer (2021)

also: arxiv.org/abs/2107.00648 (2021)

Predicting Prostate Cancer-Specific Mortality with A.I.-based Gleason Grading. Ellery Wulczyn, Kunal Nagpal, Matthew Symonds, Melissa Moran, Markus Plass, Robert Reihs, Farah Nader, Fraser Tan, Yuannan Cai, Trissia Brown, Isabelle Flament-Auvigne, Mahul B. Amin, Martin C. Stumpe, Heimo Muller, Peter Regitnig, Andreas Holzinger, Greg S. Corrado, Lily H. Peng, Po-Hsuan Cameron Chen, David F. Steiner, Kurt Zatloukal, Yun Liu, Craig H. Mermel.

Nature Communications Medicine volume 1, Article number: 10 (2021)

also: arxiv.org/abs/2012.05197

Interpretable survival prediction for colorectal cancer using deep learning. Ellery Wulczyn, David F. Steiner, Melissa Moran, Markus Plass, Robert Reihs, Fraser Tan, Isabelle Flament-Auvigne, Trissia Brown, Peter Regitnig, Po-Hsuan Cameron Chen, Narayan Hegde, Apaar Sadhwani, Robert MacDonald, Benny Ayalew, Greg S. Corrado, Lily H. Peng, Daniel Tse, Heimo Müller, Zhaoyang Xu, Yun Liu, Martin C. Stumpe, Kurt Zatloukal and Craig H. Mermel.

npj Digital Medicine volume 4, Article number: 71 (2021)

Privacy preserving validation for multiomic prediction models. Talal Ahmed, Mark A Carty, Stephane Wenric, Jonathan R Dry, Ameen A Salahudeen, Aly A Khan, Eric Lefkofsky, Martin C Stumpe, Raphael Pelossof.

Briefings in Bioinformatics, 2022;, bbac110, https://doi.org/10.1093/bib/bbac110 (2022)

also: bioRxiv 2021.04.01.437893 (2021)

Evaluation of the Use of Combined Artificial Intelligence and Pathologist Assessment to Review and Grade Prostate Biopsies. David F. Steiner, Kunal Nagpal, Rory Sayres, Davis J. Foote, Benjamin D.Wedin, Adam Pearce, Carrie J. Cai, Samantha R. Winter, Matthew Symonds, Liron Yatziv, Andrei Kapishnikov, Trissia Brown, Isabelle Flament-Auvigne, Fraser Tan, Martin C. Stumpe, Pan-Pan Jiang, Yun Liu, Po-Hsuan Cameron Chen, Greg S. Corrado, Michael Terry, Craig H. Mermel.

JAMA Network Open. 2020;3(11):e2023267. doi:10.1001/jamanetworkopen.2020.23267

Real-world Evidence of Diagnostic Testing and Treatment Patterns in U.S. Breast Cancer Patients with Implications for Treatment Biomarkers from RNA sequencing Data. Louis E. Fernandes, Caroline G. Epstein, Alexandria M. Bobe, Joshua S.K. Bell, Martin C. Stumpe, Michael E. Salazar, Ameen A. Salahudeen, Ruth A. Pe Benito, Calvin McCarter, Benjamin D. Leibowitz, Matthew Kase, Catherine Igartua, Robert Huether, Ashraf Hafez, Nike Beaubier, Michael D. Axelson, Mark D. Pegram, Sarah L. Sammons, Joyce A. O'Shaughnessy, and Gary A. Palmer.

Clin Breast Cancer. 2020 Dec 18;S1526-8209(20)30296-2

also: medrxiv (2020)

Development and Validation of a Deep Learning Algorithm for Gleason Grading of Prostate Cancer From Biopsy Specimens. Kunal Nagpal, Davis Foote, Fraser Tan, Yun Liu, Po-Hsuan Cameron Chen, David F. Steiner, Naren Manoj, Niels Olson, Jenny L. Smith, Arash Mohtashamian, Brandon Peterson, Mahul B. Amin, Andrew J. Evans, Joan W. Sweet, Carol Cheung, Theodorus van der Kwast, Ankur R. Sangoi, Ming Zhou, Robert Allan, Peter A. Humphrey, Jason D. Hipp, Krishna Gadepalli, Greg S. Corrado, Lily H. Peng, Martin C. Stumpe, Craig H. Mermel.

JAMA Oncology 6(9):1372-1380. doi:10.1001/jamaoncol.2020.2485 (2020)

Deep learning-based survival prediction for multiple cancer types using histopathology images. Ellery Wulczyn, David F. Steiner, Zhaoyang Xu, Apaar Sadhwani, Hongwu Wang, Isabelle Flament, Craig H. Mermel, Po-Hsuan Cameron Chen, Yun Liu, Martin C. Stumpe.

PLoS ONE 15(6) e0233678 (2020)

also: arXiv preprint: 1912.07354 (2019)

Prediction of mortality from 12-lead electrocardiogram voltage data using a deep neural network. Sushravya Raghunath, Alvaro E. Ulloa Cerna, Linyuan Jing, David P. vanMaanen, Joshua Stough, Dustin N. Hartzel, Joseph B. Leader, H. Lester Kirchner, Martin C. Stumpe, Ashraf Hafez, Arun Nemani, Tanner Carbonati, Kipp W. Johnson, Katelyn Young, Christopher W. Good, John M. Pfeifer, Aalpen A. Patel, Brian P. Delisle, Amro Alsaid, Dominik Beer, Christopher M. Haggerty & Brandon K. Fornwalt.

Nature Medicine volume 26, pages 886–891(2020)

Whole-Slide Image Focus Quality: Automatic Assessment and Impact on AI Cancer Detection. Timo Kohlberger, Yun Liu, Melissa Moran, Po-Hsuan (Cameron) Chen, Trissia Brown, Jason D. Hipp, Craig H. Mermel, Martin C. Stumpe.

J Pathol Inform, 10:39 (2019)

also: arXiv preprint: 1901.04619 (2019)

An Augmented Reality Microscope with Real-time Artificial Intelligence Integration. Po-Hsuan (Cameron) Chen, Krishna Gadepalli, Robert MacDonald, Yun Liu, Shiro Kadowaki, Kunal Nagpal, Timo Kohlberger, Jeffrey Dean, Greg S. Corrado, Jason D. Hipp, Martin C. Stumpe.

Nature Medicine, volume 25, pages 1453–1457 (2019)

also: arXiv preprint: 1812.00825 (2018)

Artificial Intelligence–Based Breast Cancer Nodal Metastasis Detection - Insights Into the Black Box for Pathologists. Yun Liu, Timo Kohlberger, Mohammad Norouzi, George E. Dahl, Jenny L. Smith, Arash Mohtashamian, Niels Olson, Lily H. Peng, Jason D. Hipp, Martin C. Stumpe.

Arch Pathol Lab Med.: July 2019, Vol. 143, No. 7, pp. 859-868

Similar Image Search for Histopathology: SMILY. Narayan Hegde, Jason D. Hipp, Yun Liu, Michael E. Buck, Emily Reif, Daniel Smilkov, Michael Terry, Carrie J. Cai, Mahul B. Amin, Craig H. Mermel, Phil Q. Nelson, Lily H. Peng, Greg S. Corrado, Martin C. Stumpe.

Nature Digital Medicine, volume 2, Article number: 56 (2019)

also: arXiv preprint: 1901.11112 (2019)

Human-Centered Tools for Coping with Imperfect Algorithms during Medical Decision-Making. Carrie J. Cai, Emily Reif, Narayan Hegde, Jason Hipp, Been Kim, Daniel Smilkov, Martin Wattenberg, Fernanda Viegas, Greg S. Corrado, Martin C. Stumpe, Michael Terry.

Proceedings of the 2019 CHI Conference on Human Factors in Computing Systems 2019, DOI: 10.1145/3290605.3300234

also: arXiv preprint: 1902.02960 (2019)

Development and Validation of a Deep Learning Algorithm for Improving Gleason Scoring of Prostate Cancer. Kunal Nagpal, Davis Foote, Yun Liu, Po-Hsuan (Cameron) Chen, Ellery Wulczyn, Fraser Tan, Niels Olson, Jenny L. Smith, Arash Mohtashamian, James H. Wren, Greg S. Corrado, Robert MacDonald, Lily H. Peng, Mahul B. Amin, Andrew J. Evans, Ankur R. Sangoi, Craig H. Mermel, Jason D. Hipp, Martin C. Stumpe.

Nature Digital Medicine, volume 2, Article number: 48 (2019)

also: arXiv preprint: 1811.06497 (2018)

Computer‑Aided Laser Dissection: A Microdissection Workflow Leveraging Image Analysis Tools. Jason D. Hipp, Donald J. Johann, Yun Chen, Anant Madabhushi, James Monaco, Jerome Cheng, Jaime Rodriguez‑Canales, Martin C. Stumpe, Greg Riedlinger, Avi Z. Rosenberg, Jeffrey C. Hanson, Lakshmi P. Kunju, Michael R. Emmert‑Buck, Ulysses J. Balis, Michael A. Tangrea.

J Pathol Inform 2018;9:45

Impact of Deep Learning Assistance on the Histopathologic Review of Lymph Nodes for Metastatic Breast Cancer. David F Steiner, Robert MacDonald, Yun Liu, Peter Truszkowski, Jason D Hipp, Christopher Gammage, Florence Thng, Lily Peng, Martin C Stumpe.

The American Journal of Surgical Pathology, Volume 42, Issue 12, 1636–1646, 2018

Detecting Cancer Metastases on Gigapixel Pathology Images. Yun Liu, Krishna Gadepalli, Mohammad Norouzi, George E Dahl, Timo Kohlberger, Aleksey Boyko, Subhashini Venugopalan, Aleksei Timofeev, Philip Q Nelson, Greg S Corrado, Jason D Hipp, Lily Peng, Martin C Stumpe.

arXiv preprint: 1703.02442 (2017)

Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. Varun Gulshan, Lily Peng, Marc Coram, Martin C Stumpe, Derek Wu, Arunachalam Narayanaswamy, Subhashini Venugopalan, Kasumi Widner, Tom Madams, Jorge Cuadros, Ramasamy Kim, Rajiv Raman, Philip C Nelson, Jessica L Mega, Dale R Webster.

JAMA, 316(22), 2402-2410 (2016)

Ontological supervision for fine grained classification of street view storefronts. Yair Movshovitz-Attias, Qian Yu, Martin C Stumpe, Vinay Shet, Sacha Arnoud, Liron Yatziv. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 1693-1702 (2015)

Large Scale Business Discovery from Street Level Imagery. Qian Yu, Christian Szegedy, Martin C Stumpe, Liron Yatziv, Vinay Shet, Julian Ibarz, Sacha Arnoud. arXiv preprint: 1512.05430 (2015)

Multiscale Systematic Error Correction via Wavelet-Based Bandsplitting in Kepler Data. Martin C. Stumpe, Jeffrey C. Smith, Joseph H. Catanzarite, Jeffrey E. Van Cleve, Jon M. Jenkins, Joseph D. Twicken, Forrest R. Girouard. Publications of the Astronomical Society of the Pacific, 126 (935), 100-114 (2014)

Kepler Presearch Data Conditioning II - A Bayesian Approach to Systematic Error Correction. Jeffrey C. Smith, Martin C. Stumpe, Jeffrey E. Van Cleve, Jon M. Jenkins, Thomas S. Barclay, Michael N. Fanelli, Forrest R. Girouard, Jeffery J. Kolodziejczak, Sean D. McCauliff, Robert L. Morris, Joseph D. Twicken. Publications of the Astronomical Society of the Pacific, 124 (119), 1000-1014 (2012)

Kepler Presearch Data Conditioning I - Architecture and Algorithms for Error Correction in Kepler Light Curves. Martin C. Stumpe, Jeffrey C. Smith, Jeffrey E. Van Cleve, Joseph D. Twicken, Thomas S. Barclay, Michael N. Fanelli, Forrest R. Girouard, Jon M. Jenkins, Jeffery J. Kolodziejczak, Sean D. McCauliff, Robert L. Morris. Publications of the Astronomical Society of the Pacific, 124 (119), 985-999 (2012)

Calculation of Local Water Densities in Biological Systems - A Comparison of Molecular Dynamics Simulations and the 3D-RISM Molecular Theory of Solvation. Martin C. Stumpe, Nikolay Blinov, David Wishart, Andriy Kovalenko, and Vijay S. Pande. J. Phys. Chem. B, 115(2), 319-328 (2011) (Cover article)

Molecular Determinants of Snurportin 1 Ligand Affinity and Structural Response upon Binding. Maik Goette, Martin C. Stumpe, Ralf Ficner, and Helmut Grubmüller. Biophys. J., 97(2), 581-589 (2009)

Urea Impedes the Hydrophobic Collapse of Partially Unfolded Proteins. Martin C. Stumpe and Helmut Grubmüller. Biophys. J., 96(9), 3744-3752 (2009)

Polar or Apolar - The Role of Polarity for Urea-Induced Protein Denaturation. Martin C. Stumpe and Helmut Grubmüller. PLoS Comp. Biol., 4(11), e1000221 (2008)

Interaction of Urea with Amino Acids - Implications for Urea-Induced Protein Denaturation. Martin C. Stumpe and Helmut Grubmüller. J. Am. Chem. Soc., 129(51), 16126-16131 (2007)

Aqueous Urea Solutions: Structure, Energetics, and Urea Aggregation. Martin C. Stumpe and Helmut Grubmüller. J. Phys. Chem. B, 111(22), 6220-6228 (2007) (Cover article)

Reliability of associative recall based on data manipulations in phase encoded volume holographic storage systems. G. Berger, M. Stumpe, M. Höhne, and C. Denz. J. Opt. A: Pure Appl. Opt., 7:567-575 (2005)

Social behaviour and collective motion in plant-animal worms. Nigel R Franks, Alan Worley, Katherine AJ Grant, Alice R Gorman, Victoria Vizard, Harriet Plackett, Carolina Doran, Margaret L Gamble, Martin C Stumpe, Ana B Sendova-Franks. Proc. R. Soc. B, 283(1825), 20152946 (2016)

Exploration adjustment by ant colonies. Carolina Doran, Martin C Stumpe, Ana Sendova-Franks, Nigel R Franks. Royal Society open science. 3(1), 150533 (2016)

Collective search by ants in microgravity. Stefanie M Countryman, Martin C Stumpe, Sam P Crow, Frederick R Adler, Michael J Greene, Merav Vonshak, Deborah M Gordon. Frontiers in Ecology and Evolution, 3(25) (2015)

The role of social attraction and its link with boldness in the collective movements of three-spined sticklebacks. Jolle W Jolles, Adeline Fleetwood-Wilson, Shinnosuke Nakayama, Martin C Stumpe, Rufus A Johnstone, Andrea Manica. Animal behaviour, 99, 147-153 (2015)

Ants work harder during consensus decision-making in small groups. Adam L Cronin, Martin C Stumpe. Journal of The Royal Society Interface, 11(98), 20140641 (2014)

The role of previous social experience on risk-taking and leadership in three-spined sticklebacks. Jolle W Jolles, Adeline Fleetwood-Wilson, Shinnosuke Nakayama, Martin C Stumpe, Rufus A Johnstone, Andrea Manica. Behav Ecol (2014) 25 (6): 1395-1401

Experience overrides personality differences in the tendency to follow but not in the tendency to lead. S Nakayama, MC Stumpe, A Manica, RA Johnstone. Proceedings of the Royal Society B: Biological Sciences, 280(1769) 20131724 (2013)

Harvester ants use interactions to regulate forager activation and availability. Pinter-Wollman, Noa; Bala, Ashwin; Merrell, Andrew; Queirolo, Jovel; Stumpe, Martin C; Holmes, Susan; Gordon, Deborah M. Proceedings of the Animal Behaviour, 86(1), 197-207 (2013)

Detection of Potential Transit Signals in the First Three Quarters of Kepler Mission Data. Peter Tenenbaum, Jessie L. Christiansen, Jon M. Jenkins, Jason F. Rowe, Shawn Seader, Douglas A. Caldwell, Bruce D. Clarke, Jie Li, Elisa V. Quintana, Jeffrey C. Smith, Martin C. Stumpe, Susan E. Thompson, Joseph D. Twicken, Jeffrey Van Cleve, William J. Borucki, Miles T. Cote, Michael R. Haas, Dwight T. Sanderfer, Forrest R. Girouard, Todd C. Klaus, Christopher K. Middour, Bill Wohler, Natalie M. Batalha, Thomas Barclay, and James E. Nickerson. Astrophysical Journal Supplemental Series, 199, 24 (2012)

Kepler-20: A Sun-like Star with Three Sub-Neptune Exoplanets and Two Earth-Size Candidates. Thomas N. Gautier III, David Charbonneau, Jason F. Rowe, Geoffrey W. Marcy, Howard Isaacson, Guillermo Torres, Francois Fressin, Leslie A. Rogers, Jean-Michel Désert, Lars A. Buchhave, David W. Latham, Samuel N. Quinn, David R. Ciardi, Daniel C. Fabrycky, Eric B. Ford, Ronald L. Gilliland, Lucianne M. Walkowicz, Stephen T. Bryson, William D. Cochran, Michael Endl, Debra A. Fischer, Steve B. Howel, Elliott P. Horch, Thomas Barclay, Natalie Batalha, William J. Borucki, Jessie L. Christiansen, John C. Geary, Christopher E. Henze, Matthew J. Holman, Khadeejah Ibrahim, Jon M. Jenkins, Karen Kinemuchi, David G. Koch, Jack J. Lissauer, Dwight T. Sanderfer, Dimitar D. Sasselov, Sara Seager, Kathryn Silverio, Jeffrey C. Smith, Martin Still, Martin C. Stumpe, Peter Tenenbaum, Jeffrey Van Cleve. Astrophysical Journal, 749, 15 (2012)

Probing the core structure and evolution of red giants using gravity-dominated mixed modes observed with Kepler. B. Mosser, M. J. Goupil, K. Belkacem, E. Michel, D. Stello, J. P. Marques, Y. Elsworth, C. Barban, P. G. Beck, T. R. Bedding, J. De Ridder, R. A. Garcya, S. Hekker, T. Kallinger, R. Samadi, M. C. Stumpe, T. Barclay, and C. J. Burke. Astronomy & Astrophysics, 540, A143 (2012)

Oscillation mode frequencies of 61 main-sequence and subgiant stars observed by Kepler. T. Appourchaux, W. J. Chaplin, R. A. Garcya, M. Gruberbauer, G. A. Verner, H. M. Antia, O. Benomar, T. L. Campante, G. R. Davies, S. Deheuvels, R. Handberg, S. Hekker, R. Howe, C. Regulo, D. Salabert, T. R. Bedding, T. R. White, J. Ballot, S. Mathur, V. Silva Aguirre, Y. P. Elsworth, S. Basu, R. Gilliland, J. Christensen-Dalsgaard, H. Kjeldsen, K. Uddin, M. C. Stumpe, and T. Barclay. Astronomy & Astrophysics, 543 (2012)

Unusual high-frequency oscillations in the Kepler Scuti star KIC 4840675. L. A. Balona, M. Breger, G. Catanzaro, M. S. Cunha, G. Handler, Z. Kolaczkoswki, D. W. Kurtz, S. Murphy, E. Niemczura, M. Paparo, B. Smalley, R. Szabo, K. Uytterhoeven, J. L. Christiansen, K. Uddin, M. C. Stumpe. Monthly Notices of the Royal Astronomical Society, doi: 10.1111/j.1365-2955.2012.2195.x (2012)

Planetary Candidates Observed by Kepler III: Analysis of the First 16 Months of Data. Natalie M. Batalha, Jason F. Rowe, Stephen T. Bryson, Thomas Barclay, Christopher J. Burke, Douglas A. Caldwell, Jessie L. Christiansen, Fergal Mullally, Susan E. Thompson, Timothy M. Brown, Andrea K. Dupree, Daniel C. Fabrycky, Eric B. Ford, Jonathan J. Fortney, Ronald L. Gilliland, Howard Isaacson, David W. Latham, Geoffrey W. Marcy, Samuel Quinn, Darin Ragozzine, Avi Shporer, William J. Borucki, David R. Ciardi, Thomas N. Gautier III, Michael R. Haas, Jon M. Jenkins, David G. Koch, Jack J. Lissauer, William Rapin, Gibor S. Basri, Alan P. Boss, Lars A. Buchhave, David Charbonneau, Joergen Christensen-Dalsgaard, Bruce D. Clarke, William D. Cochran, Brice-Olivier Demory, Edna Devore, Gilbert A. Esquerdo, Mark Everett, Francois Fressin, John C. Geary, Forrest R. Girouard, Alan Gould, Jennifer R. Hall, Matthew J. Holman, Andrew W. Howard, Steve B. Howell, Khadeejah A. Ibrahim, K. Kinemuchi, Hans Kjeldsen, Todd C. Klaus, Jie Li, Philip W. Lucas, Robert L. Morris, Andrej Prsa, Elisa Quintana, Dwight T. Sanderfer, Dimitar Sasselov, Shawn E. Seader, Jeffrey C. Smith, Jason H. Steffen, Martin Still, Martin C. Stumpe, Jill C. Tarter, Peter Tenenbaum, Guillermo Torres, Joseph D. Twicken, Kamal Uddin, Jeffrey Van Cleve, Lucianne Walkowicz, William F. Welsh. Astrophysical Journal Supplemental Series, 204, 24 (2013)

The Derivation, Properties and Value of Kepler's Combined Differential Photometric Precision. Jessie L. Christiansen, Jon M. Jenkins, Thomas S. Barclay, Christopher J. Burke, Douglas A. Caldwell, Bruce D. Clarke, Jie Li, Shawn Seader, Jeffrey C. Smith, Martin C. Stumpe, Peter Tenenbaum, Susan E. Thompson, Joseph D. Twicken, Jeffrey Van Cleve. Publications of the Astronomical Society of the Pacific, 124 (922), 1279-1287 (2012)

Fundamental Properties of Stars Using Asteroseismology From Kepler & Corot and Interferometry from the CHARA Array. D. Huber, M. J. Ireland, T. R. Bedding, I. M. Brandao, V. Maestro, T. R. White, H. Bruntt, L. Casagrande, J. Molenda-Zakowicz, V. Silva Aguirre, T. Barclay, C. Burke, W. J. Chaplin, J. Christensen-Dalsgaard, M. S. Cunha, J. De Ridder, C. D. Farrington, A. Frasca, R. A. Garcia, R. L. Gilliland, P. J. Goldfinger, S. Hekker, S. D. Kawaler, H. Kjeldsen, H. A. McAlister, T. S. Metcalfe, A. Miglio, M.J.P.F.G. Monteiro, M. H. Pinsonneault, G. H. Schaefer, D. Stello, M. C. Stumpe, J. Sturmann, L. Sturmann, T. A. Ten-Brummelaar, N. Turner, K. Uytterhoeven. Astrophysical Journal, 760, 32 (2013)

Machine Learning for the Integration of Pathology Images with Molecular Data. Chapter 7 in Pathological Specimens And Genomic Medicine: Emerging Issues. Martin C Stumpe, Arran Schlosberg, Laura Deming, Lily Peng, Graziella Solinas, Jason Hipp. ISBN 978-9814343442, World Scientific (2019). 

Chaperonins: The machines which fold proteins. Chapter 5 in Molecular Machines. Del Lucent, Martin C. Stumpe, and Vijay Pande. ISBN 978-9814343442, World Scientific (2011). 

De natura denaturantium - On the molecular basis of urea-induced protein denaturation. Martin Stumpe. Doktorarbeit (PhD Thesis). Max Planck Institute for Biophysical Chemistry & Georg-August-Universität Göttingen (2007) [pdf]

Inhaltsadressiertes Auslesen in einem volumenholographischen Speichersystem mit Phasencodierung (Content-based retrieval in a volume-holographic storage system with phase-encoding). Martin Stumpe. Diplomarbeit (Diploma Thesis). Westfälische Wilhelms-Universität Münster (2003)