Latest preprints
Almario, J.*, Mahmoudi, M.*, Kroll, S.*, Agler, M., Placzek, A., Mari, A., Kemen, E. 2021. Life on leaves : uncovering temporal dynamics in Arabidopsis’ leaf microbiota.
bioRxiv 2021.07.06.450897; doi: https://doi.org/10.1101/2021.07.06.450897
Publications
Almario, J.*, Fabiańska, I., Saridis, G., Bucher, M*. 2022. Unearthing the plant-microbe quid pro quo in root associations with beneficial fungi. New Phytologist https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.18061
Almario, J.*, Mahmoudi, M.*, Kroll, S.*, Agler, M., Placzek, A., Mari, A., Kemen, E. 2022. The leaf microbiome of Arabidopsis displays reproducible dynamics and patterns throughout the growing season. Mbio https://journals.asm.org/doi/full/10.1128/mbio.02825-21
Mayer, T., Mari, A., Almario, J., Murillo-Roos, M., Abdullah, H.S.M. Dombrowski, N., Hacquard, S., and Kemen, E.M., Agler, M.T. 2021. Obtaining deeper insights into microbiome diversity using a simple method to block host and non-targets in amplicon sequencing. Molecular ecology resources doi.org/10.1111/1755-0998.13408.
Xue, L.* , Almario, J.* , Fabiańska, I., Saridis, G. and Bucher, M. 2019. Dysfunction in the arbuscular mycorrhizal symbiosis has consistent but small effects on the establishment of the fungal microbiota in Lotus japonicus. New Phytologist doi:10.1111/nph.15958.
Fabiańska, I., Gerlach, N., Almario, J.*, Bucher, M*. 2018. Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana. New Phytologistdoi.org/10.1111/nph.15538.
Karasov, T., Almario, J., Friedeman, C., Ding, W., Giolai, M., Heavens, D., Kersten, S., Lundberg, D., Neuman, M., Regalado, J., Neher, R.A., Kemen, E., Weigel, D. 2018. Arabidopsis thaliana and Pseudomonaspathogens exhibit stable associations over evolutionary timescales. Cell Host & Microbe 24:168-179.
Almario, J., Jeena, G., Wunder, J., Langen, G., Zuccaro, A., Coupland, G., Bucher, M. 2017. The root fungal microbiota of non-mycorrhizal Arabis alpina and its contribution to plant P acquisition. PNAS 114:E9403-E9412.
Almario, J., Bruto, M., Vacheron, J., Prigent-Combaret, C., Moënne-Loccoz, Y., Muller, D. 2017. Distribution of 2,4-Diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology 8:1218.
Almario, J., Muller, D., Défago, G., Moënne-Loccoz, Y. 2014. Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco. Environmental Microbiology16:1949-1960.
Almario, J., Gobbin, D., Muller, D., Défago, G., Moënne-Loccoz, Y., Rezonico, F. 2014. Prevalence of type III secretion system in effective biocontrol pseudomonads. Research in Microbiology 165:300-304.
Donn, S., Almario, J., Muller, D., Moënne-Loccoz, Y., Gupta V.V.S.R., Kirkegaard, J.A., Richardson, A.E. 2014. Rhizosphere microbial communities associated with Rhizoctonia damage at the field and disease patch scale. Applied Soil Ecology 78:37-47.
Kyselková, M., Almario, J., Kopecký, J., Ságová-Marečková, M., Haurat, J., Muller, D., Grundmann, G. L. and Moënne-Loccoz, Y. 2014. Evaluation of rhizobacterial indicators of tobacco black root rot suppressiveness in farmers' fields. Environmental Microbiology Reports 6:346-353.
Almario, J., Prigent-Combaret, C., Muller, D., Moënne-Loccoz, Y. 2013. Effect of clay mineralogy on iron bioavailability and rhizosphere expression of 2,4‑diacetylphloroglucinol biosynthetic genes in biocontrol Pseudomonas protegens. Molecular Plant-Microbe Interactions 26:566-574.
Almario, J., Moënne-Loccoz, Y., Muller, D. 2013. Monitoring of the relation between 2,4‑diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils. Soil Biology and Biochemistry 57:144-155.
Almario, J.*, Kyselková, M.*, Kopecký, J., Ságová-Marečková, M., Muller, D., Grundmann, G. L., Moënne-Loccoz, Y. 2013. Assessment of the relationship between geologic origin of soil, rhizobacterial community composition and tobacco black root rot suppressiveness in Savoie region (France). Plant and Soil 371:397-408.