Hydrogen bonding is one of the most fundamental non-covalent interactions in chemistry, playing a key role in molecular recognition, solvation, catalysis, and biological structure. Early in my career, I focused on understanding hydrogen bond cooperativity, resonance-assisted hydrogen bonding, and their interplay with electronic delocalization and aromaticity. Using real-space analyses and energy decomposition methods, I explored how subtle changes in geometry or electronic structure modulate hydrogen bond strength and function. These studies laid the foundation for my broader interest in non-covalent interactions and their role in chemical reactivity and molecular design.
Hydrogen Bonding 101: Cooperative Effects in Cyclic Water Clusters
This was my first published work on hydrogen bonding, focused on the nature of cooperativity in small cyclic water clusters. Using the Interacting Quantum Atoms (IQA) method, we analyzed how individual hydrogen bonds reinforce or influence each other within the ring structures. The study provided clear evidence that hydrogen bonds in these systems behave cooperatively—not just through geometry, but also at the energetic and electronic structure levels.
Beyond its technical contributions, this work was personally significant. It earned me the award for Best Bachelor's Thesis in Chemistry in Mexico in 2013, and laid the groundwork for my ongoing interest in non-covalent interactions and real-space analysis of chemical bonding.
Hydrogen Bonding 102: Cooperativity and Anticooperativity in the Water Hexamer
In this work, we took a closer look at one of the most iconic systems in hydrogen bonding studies: the water hexamer. While it’s often used as a model system, we wanted to go beyond the usual descriptions and quantify how each hydrogen bond is influenced by its neighbors. Using the Interacting Quantum Atoms (IQA) method, we dissected individual interactions and revealed a more nuanced picture, one where both cooperativity and anticooperativity emerge, depending on the geometry and bonding context.
This study helped reinforce the idea that hydrogen bonds in clusters don’t behave independently. They respond to each other in subtle but measurable ways. It also showed how real-space energy decomposition methods can offer detailed insight into interaction patterns that are often generalized or oversimplified.
Hydrogen Bonding 201: The Nature of Resonance Assisted Hydrogen Bonds
In this paper, we tackled the concept of resonance assisted hydrogen bonding, a term often used to describe unusually strong hydrogen bonds influenced by electronic delocalization. But we wanted to move past qualitative ideas and see what the numbers actually say.
Using a combination of Interacting Quantum Atoms (IQA) and Quantum Theory of Atoms in Molecules (QTAIM), we analyzed how resonance affects the strength and character of hydrogen bonds in a series of organic systems. What we found is that the situation is more complex than the standard textbook narrative. While resonance can enhance hydrogen bonding, the effect depends on subtle shifts in charge distribution and energy balance, not just on having a conjugated system nearby.
This work helped clarify what resonance assistance really means from a quantum chemical point of view, and highlighted the value of real space methods for dissecting the underlying physics of bonding.