業績
業績
2026
Structural study of monomeric and dimeric photosystem I-LHCI supercomplexes from a bryophyte.
Tsai PC, La Rocca R, Motose H, Shen JR, Akita F.
Commun Biol. 2026 Feb 5;9(1):146. doi: 10.1038/s42003-026-09631-w.
Cryo-EM structural analyses of chlorophyll b-enriched PSI-LHC and PSII-LHC supercomplexes of the siphonous green Bryopsis corticulans.
Liu X, Li Z, Shen L, Shen L, Wu B, Li X, Yang Y, Gao S, Han G, Kuang T, Liu C, Shen JR, Wang W.
Plant Commun. 2026 Jan 22:101738. doi: 10.1016/j.xplc.2026.101738.
2025
Structural insights into a PSI-ACPI supercomplex from a cryptophyte alga Chroomonas placoidea.
Li X, Mao Z, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G.
Photosynth Res. 2025 Dec 20;164(1):2. doi: 10.1007/s11120-025-01191-0.
Editorial: special issue on photosynthesis-the basics, mechanisms, and applications.
Shen JR, Shikanai T, Li M, Ermakova M, Sakamoto W.
Plant Cell Physiol. 2025 Nov 28;66(11):1521-1524. doi: 10.1093/pcp/pcaf141.
Structural analysis of PSI-ACPI and PSII-ACPII supercomplexes from a cryptophyte alga Rhodomonas sp. NIES-2332.
Zhang W, Yonehara N, Ishii M, Jiang H, La Rocca R, Tsai PC, Li H, Kato K, Akita F, Shen JR.
Front Plant Sci. 2025 Nov 27;16:1716939. doi: 10.3389/fpls.2025.1716939.
Electronic Structure of the S1 State Manganese Cluster in Photosystem II Investigated Using Q‑Band Selective Hole-Burning.
Kosaki S, Nakamura N, Nakajima Y, Shen JR, Mino H.
ACS Phys Chem Au. 2025 Sep 14;5(6):660-671. doi: 10.1021/acsphyschemau.5c00068.
Excitation energy transfer and trapping in Photosystem I of the green alga Bryopsis corticulans.
Akhtar P, Wang W, Singhal S, Sarlós F, Shen JR, Lambrev PH.
Photosynth Res. 2025 Nov 24;163(6):62. doi: 10.1007/s11120-025-01181-2.
Artificial Mn4SrO4-Cluster Mimicking the Structural Changes of the Photosynthetic Oxygen-Evolving Center.
Chen C, Wang Z, Zhang M, Jia K, Pan F, Fan H, Xie SY, Shen JR, Su J, Wang BW, Zhang C.
J Am Chem Soc. 2025 Nov 5;147(44):41012-41022. doi: 10.1021/jacs.5c14817.
Structural insights into the divergent evolution of a photosystem I supercomplex in Euglena gracilis.
Kato K, Nakajima Y, Sakamoto R, Kumazawa M, Ifuku K, Ishikawa T, Shen JR, Takabayashi A, Nagao R.
Sci Adv. 2025 Oct 31;11(44):eaea6241. doi: 10.1126/sciadv.aea6241.
Shen L, Ren F, Wang YC, Li Z, Zheng M, Li X, Fan W, Yang Y, Sang M, Liu C, Han G, Qin S, Fan J, Tian L, Kuang T, Shen JR, Wang W.
Science. 2025 Sep 11;389(6765):eadv2132. doi: 10.1126/science.adv2132.
Time-Resolved Infrared Evidence for Protein Conformational Changes During the Dark-Rearrangement Process of Photosystem II Photoactivation: A Comparative Study of Solution and Crystal Samples.
Kato Y, Ogura K, Nakajima Y, Shen JR, Noguchi T.
Biochemistry. 2025 Sep 2;64(17):3781-3789. doi: 10.1021/acs.biochem.5c00426.
Structural insights into a citrate transporter that mediates aluminum tolerance in barley.
Nguyen Thao T, Mitani-Ueno N, Urano R, Saitoh Y, Wang P, Yamaji N, Shen JR, Shinoda W, Ma JF, Suga M.
Proc Natl Acad Sci U S A. 2025 Aug 12;122(32):e2501933122. doi: 10.1073/pnas.2501933122.
Purification and pigment analysis of diadinoxanthin-binding PSI-LHCI supercomplexes from Euglena gracilis strain Z.
Sakamoto R, Takahashi IY, Kato K, Nakajima Y, Shen JR, Nagao R.
MicroPubl Biol. 2025 Jul 29;2025:10.17912/micropub.biology.001678. doi: 10.17912/micropub.biology.001678.
Collective motions in the primary coordination sphere: a critical functional framework for catalytic activity of the oxygen-evolving complex of photosystem II.
Isobe H, Suzuki T, Suga M, Shen JR, Yamaguchi K.
Chem Sci. 2025 Jun 3;16(26):12024-12042. doi: 10.1039/d5sc02386f.
Correction: Collective motions in the primary coordination sphere: a critical functional framework for catalytic activity of the oxygen-evolving complex of photosystem II.
Isobe H, Suzuki T, Suga M, Shen JR, Yamaguchi K.
Chem Sci. 2025 Jun 12;16(25):11679. doi: 10.1039/d5sc90135a.
Structure of a photosystem I supercomplex from Galdieria sulphuraria close to an ancestral red alga.
Kato K, Kumazawa M, Nakajima Y, Suzuki T, Dohmae N, Shen JR, Ifuku K, Nagao R.
Sci Adv. 2025 May 16;11(20):eadv7488. doi: 10.1126/sciadv.adv7488.
Structure of a photosystem II-FCPII supercomplex from a haptophyte reveals a distinct antenna organization.
La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR.
Nat Commun. 2025 May 5;16(1):4175. doi: 10.1038/s41467-025-59512-9.
Cryo-EM Analysis of a Tri-Heme Cytochrome-Associated RC-LH1 Complex from the Marine Photoheterotrophic Bacterium Dinoroseobacter Shibae.
Wang W, Liu Y, Gu J, An S, Ma C, Gao H, Jiao N, Shen JR, Beatty JT, Koblížek M, Zhang X, Zheng Q, Chen JH.
Adv Sci (Weinh). 2025 May;12(18):e2413456. doi: 10.1002/advs.202413456.
Aggregation-Induced Excitation-Energy Quenching in Fucoxanthin Chlorophyll a/c-Binding Proteins from the Diatom Phaeodactylum tricornutum.
Ueno Y, Li OY, Shen JR, Tomo T, Akimoto S, Nagao R.
J Phys Chem B. 2025 Apr 10;129(14):3553-3558. doi: 10.1021/acs.jpcb.4c06894.
Structural study of the chlorophyll between Lhca8 and PsaJ in an Antarctica green algal photosystem I-LHCI supercomplex revealed by its atomic structure.
Tsai PC, Kato K, Shen JR, Akita F.
Biochim Biophys Acta Bioenerg. 2025 Apr 1;1866(2):149543. doi: 10.1016/j.bbabio.2025.149543.
Structures of PSI-FCPI from Thalassiosira pseudonana grown under high light provide evidence for convergent evolution and light-adaptive strategies in diatom FCPIs.
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W.
J Integr Plant Biol. 2025 Apr;67(4):949-966. doi: 10.1111/jipb.13816.
Biochemical evidence for the diversity of LHCI proteins in PSI-LHCI from the red alga Galdieria sulphuraria NIES-3638.
Nagao R, Ogawa H, Suzuki T, Dohmae N, Kato K, Nakajima Y, Shen JR.
Photosynth Res. 2025 Jan 27;163(1):14. doi: 10.1007/s11120-024-01134-1.
2024
Conformational Flexibility of D1-Glu189: A Crucial Determinant in Substrate Water Selection, Positioning, and Stabilization within the Oxygen-Evolving Complex of Photosystem II.
Isobe H, Suzuki T, Suga M, Shen JR, Yamaguchi K.
ACS Omega. 2024 Dec 5;9(50):50041-50048. doi: 10.1021/acsomega.4c09981.
Structural and spectroscopic insights into fucoxanthin chlorophyll a/c-binding proteins of diatoms in diverse oligomeric states.
Zhou C, Feng Y, Li Z, Shen L, Li X, Wang Y, Han G, Kuang T, Liu C, Shen JR, Wang W.
Plant Commun. 2024 Nov 11;5(11):101041. doi: 10.1016/j.xplc.2024.101041.
Structural basis for molecular assembly of fucoxanthin chlorophyll a/c-binding proteins in a diatom photosystem I supercomplex.
Kato K, Nakajima Y, Xing J, Kumazawa M, Ogawa H, Shen JR, Ifuku K, Nagao R.
Elife. 2024 Oct 31;13:RP99858. doi: 10.7554/eLife.99858.
Correction to: Presence of low-energy chlorophylls d in photosystem I trimer and monomer cores isolated from Acaryochloris sp. NBRC 102871.
Nagao R, Yamamoto H, Ogawa H, Ito H, Yamamoto Y, Suzuki T, Kato K, Nakajima Y, Dohmae N, Shen JR.
Photosynth Res. 2024 Sep;161(3):249. doi: 10.1007/s11120-024-01113-6.
Presence of low-energy chlorophylls d in photosystem I trimer and monomer cores isolated from Acaryochloris sp. NBRC 102871.
Nagao R, Yamamoto H, Ogawa H, Ito H, Yamamoto Y, Suzuki T, Kato K, Nakajima Y, Dohmae N, Shen JR.
Photosynth Res. 2024 Sep;161(3):203-212. doi: 10.1007/s11120-024-01108-3.
Ultrafast Energy Transfer in a Diatom Photosystem II Supercomplex.
Akhtar P, Feng Y, Jana S, Wang W, Shen JR, Tan HS, Lambrev PH.
J Phys Chem Lett. 2024 Jun 6;15(22):5838-5847. doi: 10.1021/acs.jpclett.4c01029.
Structure and distinct supramolecular organization of a PSII-ACPII dimer from a cryptophyte alga Chroomonas placoidea.
Mao Z, Li X, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G.
Nat Commun. 2024 May 28;15(1):4535. doi: 10.1038/s41467-024-48878-x.
Strong interaction of CpcL with photosystem I cores induced in heterocysts of Anabaena sp. PCC 7120.
Suzuki T, Ogawa H, Dohmae N, Shen JR, Ehira S, Nagao R.
MicroPubl Biol. 2024 May 27;2024:10.17912/micropub.biology.001183. doi: 10.17912/micropub.biology.001183.
Effects of lipids on the rate-limiting steps in the dark-to-light transition of Photosystem II core complex of Thermostichus vulcanus.
Magyar M, Akhtar P, Sipka G, Domonkos I, Han W, Li X, Han G, Shen JR, Lambrev PH, Garab G.
Front Plant Sci. 2024 Mar 21;15:1381040. doi: 10.3389/fpls.2024.1381040.
The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs.
Kato K, Hamaguchi T, Kumazawa M, Nakajima Y, Ifuku K, Hirooka S, Hirose Y, Miyagishima SY, Suzuki T, Kawakami K, Dohmae N, Yonekura K, Shen JR, Nagao R.
Proc Natl Acad Sci U S A. 2024 Mar 12;121(11):e2319658121. doi: 10.1073/pnas.2319658121.
Structure of a unique PSII-Pcb tetrameric megacomplex in a chlorophyll d-containing cyanobacterium.
Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G.
Sci Adv. 2024 Feb 23;10(8):eadk7140. doi: 10.1126/sciadv.adk7140.
Structures and organizations of PSI-AcpPCI supercomplexes from red tidal and coral symbiotic photosynthetic dinoflagellates.
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W.
Proc Natl Acad Sci U S A. 2024 Feb 13;121(7):e2315476121. doi: 10.1073/pnas.2315476121.
Oxygen-evolving photosystem II structures during S1-S2-S3 transitions.
Li H, Nakajima Y, Nango E, Owada S, Yamada D, Hashimoto K, Luo F, Tanaka R, Akita F, Kato K, Kang J, Saitoh Y, Kishi S, Yu H, Matsubara N, Fujii H, Sugahara M, Suzuki M, Masuda T, Kimura T, Thao TN, Yonekura S, Yu LJ, Tosha T, Tono K, Joti Y, Hatsui T, Yabashi M, Kubo M, Iwata S, Isobe H, Yamaguchi K, Suga M, Shen JR.
Nature. 2024 Feb;626(7999):670-677. doi: 10.1038/s41586-023-06987-5
Quantifying the Energy Spillover between Photosystems II and I in Cyanobacterial Thylakoid Membranes and Cells.
Akhtar P, Balog-Vig F, Han W, Li X, Han G, Shen JR, Lambrev PH.
Plant Cell Physiol. 2024 Jan 19;65(1):95-106. doi: 10.1093/pcp/pcad127.
2023
Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana.
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W.
Nat Commun. 2023 Dec 9;14(1):8164. doi: 10.1038/s41467-023-44055-8.
Tight association of CpcL with photosystem I in Anabaena sp. PCC 7120 grown under iron-deficient conditions.
Shimizu S, Ogawa H, Tsuboshita N, Suzuki T, Kato K, Nakajima Y, Dohmae N, Shen JR, Nagao R.
Biochim Biophys Acta Bioenerg. 2023 Nov 1;1864(4):148993. doi: 10.1016/j.bbabio.2023.148993.
Structure of a diatom photosystem II supercomplex containing a member of Lhcx family and dimeric FCPII.
Feng Y, Li Z, Li X, Shen L, Liu X, Zhou C, Zhang J, Sang M, Han G, Yang W, Kuang T, Wang W, Shen JR.
Sci Adv. 2023 Oct 27;9(43):eadi8446. doi: 10.1126/sciadv.adi8446.
Structural and functional properties of different types of siphonous LHCII trimers from an intertidal green alga Bryopsis corticulans.
Li Z, Zhou C, Zhao S, Zhang J, Liu X, Sang M, Qin X, Yang Y, Han G, Kuang T, Shen JR, Wang W.
Structure. 2023 Oct 5;31(10):1247-1258.e3. doi: 10.1016/j.str.2023.08.001.
Isolation and characterization of trimeric and monomeric PSI cores from Acaryochloris marina MBIC11017.
Nagao R, Ogawa H, Tsuboshita N, Kato K, Toyofuku R, Tomo T, Shen JR.
Photosynth Res. 2023 Sep;157(2-3):55-63. doi: 10.1007/s11120-023-01025-x.
Structural insights into the action mechanisms of artificial electron acceptors in photosystem II.
Kamada S, Nakajima Y, Shen JR.
J Biol Chem. 2023 Jul;299(7):104839. doi: 10.1016/j.jbc.2023.104839.
Biochemical and spectroscopic characterization of PSI-LHCI from the red alga Cyanidium caldarium.
Nagao R, Ueno Y, Furutani M, Kato K, Shen JR, Akimoto S.
Photosynth Res. 2023 Jun;156(3):315-323. doi: 10.1007/s11120-023-00999-y.
Structural insights into a unique PSI-LHCI-LHCII-Lhcb9 supercomplex from moss Physcomitrium patens.
Zhang S, Tang K, Yan Q, Li X, Shen L, Wang W, He YK, Kuang T, Han G, Shen JR, Zhang X.
Nat Plants. 2023 May;9(5):832-846. doi: 10.1038/s41477-023-01401-4.
Development of serial X-ray fluorescence holography for radiation-sensitive protein crystals.
Ang AKR, Umena Y, Sato-Tomita A, Shibayama N, Happo N, Marumi R, Yamamoto Y, Kimura K, Kawamura N, Takano Y, Matsushita T, Sasaki YC, Shen JR, Hayashi K.
J Synchrotron Radiat. 2023 Mar 1;30(Pt 2):368-378. doi: 10.1107/S1600577522011833.
Structure of a monomeric photosystem I core associated with iron-stress-induced-A proteins from Anabaena sp. PCC 7120.
Nagao R, Kato K, Hamaguchi T, Ueno Y, Tsuboshita N, Shimizu S, Furutani M, Ehira S, Nakajima Y, Kawakami K, Suzuki T, Dohmae N, Akimoto S, Yonekura K, Shen JR.
Nat Commun. 2023 Feb 17;14(1):920. doi: 10.1038/s41467-023-36504-1.
2022
Photoinduced chlorophyll charge transfer state identified in the light-harvesting complex II from a marine green alga Bryopsis corticulans.
Li DH, Wang W, Zhou C, Zhang Y, Zhao S, Zhou YM, Gao RY, Yao HD, Fu LM, Wang P, Shen JR, Kuang T, Zhang JP.
iScience. 2022 Dec 7;26(1):105761. doi: 10.1016/j.isci.2022.105761.
Cryo-electron microscopy structure of the intact photosynthetic light-harvesting antenna-reaction center complex from a green sulfur bacterium.
Chen JH, Wang W, Wang C, Kuang T, Shen JR, Zhang X.
J Integr Plant Biol. 2023 Jan;65(1):223-234. doi: 10.1111/jipb.13367.
Characterization of the Rate-Limiting Steps in the Dark-To-Light Transitions of Closed Photosystem II: Temperature Dependence and Invariance of Waiting Times during Multiple Light Reactions.
Magyar M, Sipka G, Han W, Li X, Han G, Shen JR, Lambrev PH, Garab G.
Int J Mol Sci. 2022 Dec 21;24(1):94. doi: 10.3390/ijms24010094.
Natural and artificial photosynthesis: fundamentals, progress, and challenges.
Najafpour MM, Shen JR, Allakhverdiev SI.
Photosynth Res. 2022 Dec;154(3):229-231. doi: 10.1007/s11120-022-00982-z.
Crystal structures of photosystem II from a cyanobacterium expressing psbA2 in comparison to psbA3 reveal differences in the D1 subunit.
Nakajima Y, Ugai-Amo N, Tone N, Nakagawa A, Iwai M, Ikeuchi M, Sugiura M, Suga M, Shen JR.
J Biol Chem. 2022 Dec;298(12):102668. doi: 10.1016/j.jbc.2022.102668.
Exciton quenching by oxidized chlorophyll Z across the two adjacent monomers in a photosystem II core dimer.
Mohamed A, Nishi S, Kawakami K, Shen JR, Itoh S, Fukumura H, Shibata Y.
Photosynth Res. 2022 Dec;154(3):277-289. doi: 10.1007/s11120-022-00948-1.
A Possible Mechanism for Aggregation-Induced Chlorophyll Fluorescence Quenching in Light-Harvesting Complex II from the Marine Green Alga Bryopsis corticulans.
Yao HD, Li DH, Gao RY, Zhou C, Wang W, Wang P, Shen JR, Kuang T, Zhang JP.
J Phys Chem B. 2022 Nov 24;126(46):9580-9590. doi: 10.1021/acs.jpcb.2c05823.
Excitation relaxation dynamics of carotenoids constituting the diadinoxanthin cycle.
Kagatani K, Nagao R, Shen JR, Yamano Y, Takaichi S, Akimoto S.
Photosynth Res. 2022 Oct;154(1):13-19. doi: 10.1007/s11120-022-00944-5.
Roles of the Flexible Primary Coordination Sphere of the Mn4CaOx Cluster: What Are the Immediate Decay Products of the S3 State?
Isobe H, Shoji M, Suzuki T, Shen JR, Yamaguchi K.
J Phys Chem B. 2022 Sep 29;126(38):7212-7228. doi: 10.1021/acs.jpcb.2c02596.
Simulating the low-temperature, metastable electrochromism of Photosystem I: Applications to Thermosynechococcus vulcanus and Chroococcidiopsis thermalis.
Langley J, Purchase R, Viola S, Fantuzzi A, Davis GA, Shen JR, Rutherford AW, Krausz E, Cox N.
J Chem Phys. 2022 Sep 28;157(12):125103. doi: 10.1063/5.0100431.
Excited-state intermediates in a designer protein encoding a phototrigger caught by an X-ray free-electron laser.
Liu X, Liu P, Li H, Xu Z, Jia L, Xia Y, Yu M, Tang W, Zhu X, Chen C, Zhang Y, Nango E, Tanaka R, Luo F, Kato K, Nakajima Y, Kishi S, Yu H, Matsubara N, Owada S, Tono K, Iwata S, Yu LJ, Shen JR, Wang J.
Nat Chem. 2022 Sep;14(9):1054-1060. doi: 10.1038/s41557-022-00992-3.
Effects of mutations of D1-R323, D1-N322, D1-D319, D1-H304 on the functioning of photosystem II in Thermosynechococcus vulcanus.
Zhu Q, Yang Y, Xiao Y, Han W, Li X, Wang W, Kuang T, Shen JR, Han G.
Photosynth Res. 2022 May;152(2):193-206. doi: 10.1007/s11120-022-00920-z.
Structural elucidation of vascular plant photosystem I and its functional implications.
Li X, Yang G, Yuan X, Wu F, Wang W, Shen JR, Kuang T, Qin X.
Funct Plant Biol. 2022 May;49(6):432-443. doi: 10.1071/FP21077.
Ultrafast excitation quenching by the oxidized photosystem II reaction center.
Akhtar P, Sipka G, Han W, Li X, Han G, Shen JR, Garab G, Tan HS, Lambrev PH.
J Chem Phys. 2022 Apr 14;156(14):145101. doi: 10.1063/5.0086046.
Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus.
Kato K, Hamaguchi T, Nagao R, Kawakami K, Ueno Y, Suzuki T, Uchida H, Murakami A, Nakajima Y, Yokono M, Akimoto S, Dohmae N, Yonekura K, Shen JR.
Elife. 2022 Apr 11;11:e73990. doi: 10.7554/eLife.73990.
Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex.
Nagao R, Kato K, Kumazawa M, Ifuku K, Yokono M, Suzuki T, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR.
Nat Commun. 2022 Apr 1;13(1):1764. doi: 10.1038/s41467-022-29294-5.
Structure of a tetrameric photosystem I from a glaucophyte alga Cyanophora paradoxa.
Kato K, Nagao R, Ueno Y, Yokono M, Suzuki T, Jiang TY, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR.
Nat Commun. 2022 Mar 30;13(1):1679. doi: 10.1038/s41467-022-29303-7.
Structure, Function, and Variations of the Photosystem I-Antenna Supercomplex from Different Photosynthetic Organisms.
Shen JR.
Subcell Biochem. 2022;99:351-377. doi: 10.1007/978-3-031-00793-4_11.
Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare.
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X.
Nature. 2022 Jan;601(7894):649-654. doi: 10.1038/s41586-021-04277-6.
Excitation-energy transfer in heterocysts isolated from the cyanobacterium Anabaena sp. PCC 7120 as studied by time-resolved fluorescence spectroscopy.
Nagao R, Yokono M, Ueno Y, Nakajima Y, Suzuki T, Kato KH, Tsuboshita N, Dohmae N, Shen JR, Ehira S, Akimoto S.
Biochim Biophys Acta Bioenerg. 2022 Jan 1;1863(1):148509. doi: 10.1016/j.bbabio.2021.148509.
Molecular phylogeny of fucoxanthin-chlorophyll a/c proteins from Chaetoceros gracilis and Lhcq/Lhcf diversity.
Kumazawa M, Nishide H, Nagao R, Inoue-Kashino N, Shen JR, Nakano T, Uchiyama I, Kashino Y, Ifuku K.
Physiol Plant. 2022 Jan;174(1):e13598. doi: 10.1111/ppl.13598.
2021
Structural basis for high selectivity of a rice silicon channel Lsi1.
Saitoh Y, Mitani-Ueno N, Saito K, Matsuki K, Huang S, Yang L, Yamaji N, Ishikita H, Shen JR, Ma JF, Suga M.
Nat Commun. 2021 Oct 29;12(1):6236. doi: 10.1038/s41467-021-26535-x.
Cryo-EM structure of monomeric photosystem II at 2.78 Å resolution reveals factors important for the formation of dimer.
Yu H, Hamaguchi T, Nakajima Y, Kato K, Kawakami K, Akita F, Yonekura K, Shen JR.
Biochim Biophys Acta Bioenerg. 2021 Oct 1;1862(10):148471. doi: 10.1016/j.bbabio.2021.148471.
A unique photosystem I reaction center from a chlorophyll d-containing cyanobacterium Acaryochloris marina.
Xu C, Zhu Q, Chen JH, Shen L, Yi X, Huang Z, Wang W, Chen M, Kuang T, Shen JR, Zhang X, Han G.
J Integr Plant Biol. 2021 Oct;63(10):1740-1752. doi: 10.1111/jipb.13113.
Structural implications for a phycobilisome complex from the thermophilic cyanobacterium Thermosynechococcus vulcanus.
Kawakami K, Nagao R, Tahara YO, Hamaguchi T, Suzuki T, Dohmae N, Kosumi D, Shen JR, Miyata M, Yonekura K, Kamiya N.
Biochim Biophys Acta Bioenerg. 2021 Sep 1;1862(9):148458. doi: 10.1016/j.bbabio.2021.148458.
High-light modification of excitation-energy-relaxation processes in the green flagellate Euglena gracilis.
Nagao R, Yokono M, Kato KH, Ueno Y, Shen JR, Akimoto S.
Photosynth Res. 2021 Sep;149(3):303-311. doi: 10.1007/s11120-021-00849-9.
Structural insights into cyanobacterial photosystem II intermediates associated with Psb28 and Tsl0063.
Xiao Y, Huang G, You X, Zhu Q, Wang W, Kuang T, Han G, Sui SF, Shen JR.
Nat Plants. 2021 Aug;7(8):1132-1142. doi: 10.1038/s41477-021-00961-7.
Structure of plant photosystem I-light harvesting complex I supercomplex at 2.4 Å resolution.
Wang J, Yu LJ, Wang W, Yan Q, Kuang T, Qin X, Shen JR.
J Integr Plant Biol. 2021 Jul;63(7):1367-1381. doi: 10.1111/jipb.13095.
Light-adapted charge-separated state of photosystem II: structural and functional dynamics of the closed reaction center.
Sipka GB, Magyar M, Mezzetti A, Akhtar P, Zhu Q, Xiao Y, Han G, Santabarbara S, Shen JR, Lambrev PH, Garab G.
Plant Cell. 2021 May 31;33(4):1286-1302. doi: 10.1093/plcell/koab008.
Capturing structural changes of the S1 to S2 transition of photosystem II using time-resolved serial femtosecond crystallography.
Li H, Nakajima Y, Nomura T, Sugahara M, Yonekura S, Chan SK, Nakane T, Yamane T, Umena Y, Suzuki M, Masuda T, Motomura T, Naitow H, Matsuura Y, Kimura T, Tono K, Owada S, Joti Y, Tanaka R, Nango E, Akita F, Kubo M, Iwata S, Shen JR, Suga M.
IUCrJ. 2021 Apr 7;8(Pt 3):431-443. doi: 10.1107/S2052252521002177.
High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams.
Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen JR.
Commun Biol. 2021 Mar 22;4(1):382. doi: 10.1038/s42003-021-01919-3.
Structure of photosystem I-LHCI-LHCII from the green alga Chlamydomonas reinhardtii in State 2.
Huang Z, Shen L, Wang W, Mao Z, Yi X, Kuang T, Shen JR, Zhang X, Han G.
Nat Commun. 2021 Feb 17;12(1):1100. doi: 10.1038/s41467-021-21362-6.
Antenna arrangement and energy-transfer pathways of PSI-LHCI from the moss Physcomitrella patens.
Yan Q, Zhao L, Wang W, Pi X, Han G, Wang J, Cheng L, He YK, Kuang T, Qin X, Sui SF, Shen JR.
Cell Discov. 2021 Feb 16;7(1):10. doi: 10.1038/s41421-021-00242-9.
An Exciton Dynamics Model of Bryopsis corticulans Light-Harvesting Complex II.
Nguyen HL, Do TN, Akhtar P, Jansen TLC, Knoester J, Wang W, Shen JR, Lambrev PH, Tan HS.
J Phys Chem B. 2021 Feb 4;125(4):1134-1143. doi: 10.1021/acs.jpcb.0c10634.
Structural insights into a dimeric Psb27-photosystem II complex from a cyanobacterium Thermosynechococcus vulcanus.
Huang G, Xiao Y, Pi X, Zhao L, Zhu Q, Wang W, Kuang T, Han G, Sui SF, Shen JR.
Proc Natl Acad Sci U S A. 2021 Feb 2;118(5):e2018053118. doi: 10.1073/pnas.2018053118.
Enhancement of excitation-energy quenching in fucoxanthin chlorophyll a/c-binding proteins isolated from a diatom Phaeodactylum tricornutum upon excess-light illumination.
Nagao R, Yokono M, Ueno Y, Suzuki T, Kumazawa M, Kato KH, Tsuboshita N, Dohmae N, Ifuku K, Shen JR, Akimoto S.
Biochim Biophys Acta Bioenerg. 2021 Feb 1;1862(2):148350. doi: 10.1016/j.bbabio.2020.148350.
Molecular organizations and function of iron-stress-induced-A protein family in Anabaena sp. PCC 7120.
Nagao R, Yokono M, Ueno Y, Suzuki T, Kato K, Kato KH, Tsuboshita N, Jiang TY, Dohmae N, Shen JR, Ehira S, Akimoto S.
Biochim Biophys Acta Bioenerg. 2021 Jan 1;1862(1):148327. doi: 10.1016/j.bbabio.2020.148327.
Basic pH-induced modification of excitation-energy dynamics in fucoxanthin chlorophyll a/c-binding proteins isolated from a pinguiophyte, Glossomastix chrysoplasta.
Nagao R, Yokono M, Ueno Y, Kato KH, Tsuboshita N, Shen JR, Akimoto S.
Biochim Biophys Acta Bioenerg. 2021 Jan 1;1862(1):148306. doi: 10.1016/j.bbabio.2020.148306.
2020
Regulation of photosystem I-light-harvesting complex I from a red alga Cyanidioschyzon merolae in response to light intensities.
Chang L, Tian L, Ma F, Mao Z, Liu X, Han G, Wang W, Yang Y, Kuang T, Pan J, Shen JR.
Photosynth Res. 2020 Dec;146(1-3):287-297. doi: 10.1007/s11120-020-00778-z.
Role of PsbV-Tyr137 in photosystem II studied by site-directed mutagenesis in the thermophilic cyanobacterium Thermosynechococcus vulcanus.
Xiao Y, Zhu Q, Yang Y, Wang W, Kuang T, Shen JR, Han G.
Photosynth Res. 2020 Dec;146(1-3):41-54. doi: 10.1007/s11120-020-00753-8.
Effects of CO2 and temperature on photosynthetic performance in the diatom Chaetoceros gracilis.
Nagao R, Ueno Y, Akimoto S, Shen JR.
Photosynth Res. 2020 Dec;146(1-3):189-195. doi: 10.1007/s11120-020-00729-8.
Changes in excitation relaxation of diatoms in response to fluctuating light, probed by fluorescence spectroscopies.
Tanabe M, Ueno Y, Yokono M, Shen JR, Nagao R, Akimoto S.
Photosynth Res. 2020 Dec;146(1-3):143-150. doi: 10.1007/s11120-020-00720-3.
Function of PsbO-Asp158 in photosystem II: effects of mutation of this residue on the binding of PsbO and function of PSII in Thermosynechococcus vulcanus.
Zhu Q, Yang Y, Xiao Y, Wang W, Kuang T, Shen JR, Han G.
Photosynth Res. 2020 Dec;146(1-3):29-40. doi: 10.1007/s11120-020-00715-0.
Adaptation of light-harvesting and energy-transfer processes of a diatom Chaetoceros gracilis to different light qualities.
Akimoto S, Ueno Y, Yokono M, Shen JR, Nagao R.
Photosynth Res. 2020 Dec;146(1-3):87-93. doi: 10.1007/s11120-020-00713-2.
Adaptation of light-harvesting and energy-transfer processes of a diatom Phaeodactylum tricornutum to different light qualities.
Oka K, Ueno Y, Yokono M, Shen JR, Nagao R, Akimoto S.
Photosynth Res. 2020 Dec;146(1-3):227-234. doi: 10.1007/s11120-020-00714-1.
Architecture of the photosynthetic complex from a green sulfur bacterium.
Chen JH, Wu H, Xu C, Liu XC, Huang Z, Chang S, Wang W, Han G, Kuang T, Shen JR, Zhang X.
Science. 2020 Nov 20;370(6519):eabb6350. doi: 10.1126/science.abb6350.
Reply to "Comment on 'Acidic pH-Induced Modification of Energy Transfer in Diatom Fucoxanthin Chlorophyll a/c-Binding Proteins'".
Nagao R, Yokono M, Ueno Y, Shen JR, Akimoto S.
J Phys Chem B. 2020 Nov 19;124(46):10588-10589. doi: 10.1021/acs.jpcb.0c09575.
Formation of the High-Spin S2 State Related to the Extrinsic Proteins in the Oxygen Evolving Complex of Photosystem II.
Taguchi S, Shen L, Han G, Umena Y, Shen JR, Noguchi T, Mino H.
J Phys Chem Lett. 2020 Oct 15;11(20):8908-8913. doi: 10.1021/acs.jpclett.0c02411.
Structural basis for energy transfer in a huge diatom PSI-FCPI supercomplex.
Xu C, Pi X, Huang Y, Han G, Chen X, Qin X, Huang G, Zhao S, Yang Y, Kuang T, Wang W, Sui SF, Shen JR.
Nat Commun. 2020 Oct 8;11(1):5081. doi: 10.1038/s41467-020-18867-x.
Structural variations of photosystem I-antenna supercomplex in response to adaptations to different light environments.
Suga M, Shen JR.
Curr Opin Struct Biol. 2020 Aug;63:10-17. doi: 10.1016/j.sbi.2020.02.005.
Spectral tuning of light-harvesting complex II in the siphonous alga Bryopsis corticulans and its effect on energy transfer dynamics.
Akhtar P, Nowakowski PJ, Wang W, Do TN, Zhao S, Siligardi G, Garab G, Shen JR, Tan HS, Lambrev PH.
Biochim Biophys Acta Bioenerg. 2020 Jul 1;1861(7):148191. doi: 10.1016/j.bbabio.2020.148191.
Acidic pH-Induced Modification of Energy Transfer in Diatom Fucoxanthin Chlorophyll a/c-Binding Proteins.
Nagao R, Yokono M, Ueno Y, Shen JR, Akimoto S.
J Phys Chem B. 2020 Jun 18;124(24):4919-4923. doi: 10.1021/acs.jpcb.0c04231.
Excitation dynamics and relaxation in the major antenna of a marine green alga Bryopsis corticulans.
Li DH, Wang W, Zhou C, Zhang Y, Wang P, Shen JR, Kuang T, Zhang JP.
Biochim Biophys Acta Bioenerg. 2020 Jun 1;1861(5-6):148186. doi: 10.1016/j.bbabio.2020.148186.
Structural features of the diatom photosystem II-light-harvesting antenna complex.
Wang W, Zhao S, Pi X, Kuang T, Sui SF, Shen JR.
FEBS J. 2020 Jun;287(11):2191-2200. doi: 10.1111/febs.15183.
Structural basis for assembly and function of a diatom photosystem I-light-harvesting supercomplex.
Nagao R, Kato K, Ifuku K, Suzuki T, Kumazawa M, Uchiyama I, Kashino Y, Dohmae N, Akimoto S, Shen JR, Miyazaki N, Akita F.
Nat Commun. 2020 May 18;11(1):2481. doi: 10.1038/s41467-020-16324-3.
Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins.
Akita F, Nagao R, Kato K, Nakajima Y, Yokono M, Ueno Y, Suzuki T, Dohmae N, Shen JR, Akimoto S, Miyazaki N.
Commun Biol. 2020 May 11;3(1):232. doi: 10.1038/s42003-020-0949-6.
pH-Induced Regulation of Excitation Energy Transfer in the Cyanobacterial Photosystem I Tetramer.
Nagao R, Yokono M, Ueno Y, Jiang TY, Shen JR, Akimoto S.
J Phys Chem B. 2020 Mar 12;124(10):1949-1954. doi: 10.1021/acs.jpcb.0c01136.
Excitation-Energy Transfer and Quenching in Diatom PSI-FCPI upon P700 Cation Formation.
Nagao R, Yokono M, Ueno Y, Shen JR, Akimoto S.
J Phys Chem B. 2020 Feb 27;124(8):1481-1486. doi: 10.1021/acs.jpcb.0c00715.
Time-resolved studies of metalloproteins using X-ray free electron laser radiation at SACLA.
Suga M, Shimada A, Akita F, Shen JR, Tosha T, Sugimoto H.
Biochim Biophys Acta Gen Subj. 2020 Feb;1864(2):129466. doi: 10.1016/j.bbagen.2019.129466.
Structural basis for the adaptation and function of chlorophyll f in photosystem I.
Kato K, Shinoda T, Nagao R, Akimoto S, Suzuki T, Dohmae N, Chen M, Allakhverdiev SI, Shen JR, Akita F, Miyazaki N, Tomo T.
Nat Commun. 2020 Jan 13;11(1):238. doi: 10.1038/s41467-019-13898-5.
FTIR Microspectroscopic Analysis of the Water Oxidation Reaction in a Single Photosystem II Microcrystal.
Kato Y, Haniu S, Nakajima Y, Akita F, Shen JR, Noguchi T.
J Phys Chem B. 2020 Jan 9;124(1):121-127. doi: 10.1021/acs.jpcb.9b10154.
2019
An alternative plant-like cyanobacterial ferredoxin with unprecedented structural and functional properties.
Motomura T, Zuccarello L, Sétif P, Boussac A, Umena Y, Lemaire D, Tripathy JN, Sugiura M, Hienerwadel R, Shen JR, Berthomieu C.
Biochim Biophys Acta Bioenerg. 2019 Nov 1;1860(11):148084. doi: 10.1016/j.bbabio.2019.148084.
Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy.
Kato K, Nagao R, Jiang TY, Ueno Y, Yokono M, Chan SK, Watanabe M, Ikeuchi M, Shen JR, Akimoto S, Miyazaki N, Akita F.
Nat Commun. 2019 Oct 30;10(1):4929. doi: 10.1038/s41467-019-12942-8.
An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Suga M, Akita F, Yamashita K, Nakajima Y, Ueno G, Li H, Yamane T, Hirata K, Umena Y, Yonekura S, Yu LJ, Murakami H, Nomura T, Kimura T, Kubo M, Baba S, Kumasaka T, Tono K, Yabashi M, Isobe H, Yamaguchi K, Yamamoto M, Ago H, Shen JR.
Science. 2019 Oct 18;366(6463):334-338. doi: 10.1126/science.aax6998.
Structure of a C2S2M2N2-type PSII-LHCII supercomplex from the green alga Chlamydomonas reinhardtii.
Shen L, Huang Z, Chang S, Wang W, Wang J, Kuang T, Han G, Shen JR, Zhang X.
Proc Natl Acad Sci U S A. 2019 Oct 15;116(42):21246-21255. doi: 10.1073/pnas.1912462116.
Spectral Properties and Excitation Relaxation of Novel Fucoxanthin Chlorophyll a/c-Binding Protein Complexes.
Ueno Y, Nagao R, Shen JR, Akimoto S.
J Phys Chem Lett. 2019 Sep 5;10(17):5148-5152. doi: 10.1021/acs.jpclett.9b02093.
Effects of excess light energy on excitation-energy dynamics in a pennate diatom Phaeodactylum tricornutum.
Nagao R, Ueno Y, Yokono M, Shen JR, Akimoto S.
Photosynth Res. 2019 Sep;141(3):355-365. doi: 10.1007/s11120-019-00639-4.
A manganese(ii) phthalocyanine under water-oxidation reaction: new findings.
Mousazade Y, Najafpour MM, Bagheri R, Jagličić Z, Singh JP, Chae KH, Song Z, Rodionova MV, Voloshin RA, Shen JR, Ramakrishna S, Allakhverdiev SI.
Dalton Trans. 2019 Aug 28;48(32):12147-12158. doi: 10.1039/c9dt01790a.
The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
Pi X, Zhao S, Wang W, Liu D, Xu C, Han G, Kuang T, Sui SF, Shen JR.
Science. 2019 Aug 2;365(6452):eaax4406. doi: 10.1126/science.aax4406.
Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nagao R, Kato K, Suzuki T, Ifuku K, Uchiyama I, Kashino Y, Dohmae N, Akimoto S, Shen JR, Miyazaki N, Akita F.
Nat Plants. 2019 Aug;5(8):890-901. doi: 10.1038/s41477-019-0477-x.
pH-Sensing Machinery of Excitation Energy Transfer in Diatom PSI-FCPI Complexes.
Nagao R, Yokono M, Ueno Y, Shen JR, Akimoto S.
J Phys Chem Lett. 2019 Jul 5;10(13):3531-3535. doi: 10.1021/acs.jpclett.9b01314.
Proton-Coupled Electron Transfer of Plastoquinone Redox Reactions in Photosystem II: A Pump-Probe Ultraviolet Resonance Raman Study.
Chen J, Chen J, Liu Y, Zheng Y, Zhu Q, Han G, Shen JR.
J Phys Chem Lett. 2019 Jun 20;10(12):3240-3247. doi: 10.1021/acs.jpclett.9b00959.
Redox transients of P680 associated with the incremental chlorophyll-a fluorescence yield rises elicited by a series of saturating flashes in diuron-treated photosystem II core complex of Thermosynechococcus vulcanus.
Sipka G, Müller P, Brettel K, Magyar M, Kovács L, Zhu Q, Xiao Y, Han G, Lambrev PH, Shen JR, Garab G.
Physiol Plant. 2019 May;166(1):22-32. doi: 10.1111/ppl.12945.
Biochemical characterization of photosystem I complexes having different subunit compositions of fucoxanthin chlorophyll a/c-binding proteins in the diatom Chaetoceros gracilis.
Nagao R, Ueno Y, Akita F, Suzuki T, Dohmae N, Akimoto S, Shen JR.
Photosynth Res. 2019 May;140(2):141-149. doi: 10.1007/s11120-018-0576-y.
Spin, Valence, and Structural Isomerism in the S3 State of the Oxygen-Evolving Complex of Photosystem II as a Manifestation of Multimetallic Cooperativity.
Isobe H, Shoji M, Suzuki T, Shen JR, Yamaguchi K.
J Chem Theory Comput. 2019 Apr 9;15(4):2375-2391. doi: 10.1021/acs.jctc.8b01055.
Ultrafast Excitation Energy Dynamics in a Diatom Photosystem I-Antenna Complex: A Femtosecond Fluorescence Upconversion Study.
Nagao R, Kagatani K, Ueno Y, Shen JR, Akimoto S.
J Phys Chem B. 2019 Mar 28;123(12):2673-2678. doi: 10.1021/acs.jpcb.8b12086.
Structure of a green algal photosystem I in complex with a large number of light-harvesting complex I subunits.
Qin X, Pi X, Wang W, Han G, Zhu L, Liu M, Cheng L, Shen JR, Kuang T, Sui SF.
Nat Plants. 2019 Mar;5(3):263-272. doi: 10.1038/s41477-019-0379-y.
Site-directed mutagenesis of two amino acid residues in cytochrome b559 α subunit that interact with a phosphatidylglycerol molecule (PG772) induces quinone-dependent inhibition of photosystem II activity.
Endo K, Kobayashi K, Wang HT, Chu HA, Shen JR, Wada H.
Photosynth Res. 2019 Mar;139(1-3):267-279. doi: 10.1007/s11120-018-0555-3.
Properties and structure of a low-potential, penta-heme cytochrome c552 from a thermophilic purple sulfur photosynthetic bacterium Thermochromatium tepidum.
Chen JH, Yu LJ, Boussac A, Wang-Otomo ZY, Kuang T, Shen JR.
Photosynth Res. 2019 Mar;139(1-3):281-293. doi: 10.1007/s11120-018-0507-y.
Structural basis for blue-green light harvesting and energy dissipation in diatoms.
Wang W, Yu LJ, Xu C, Tomizaki T, Zhao S, Umena Y, Chen X, Qin X, Xin Y, Suga M, Han G, Kuang T, Shen JR.
Science. 2019 Feb 8;363(6427):eaav0365. doi: 10.1126/science.aav0365.
Low-Energy Chlorophylls in Fucoxanthin Chlorophyll a/ c-Binding Protein Conduct Excitation Energy Transfer to Photosystem I in Diatoms.
Nagao R, Yokono M, Ueno Y, Shen JR, Akimoto S.
J Phys Chem B. 2019 Jan 10;123(1):66-70. doi: 10.1021/acs.jpcb.8b09253.
2018
Novel features of LH1-RC from Thermochromatium tepidum revealed from its atomic resolution structure.
Yu LJ, Suga M, Wang-Otomo ZY, Shen JR.
FEBS J. 2018 Dec;285(23):4359-4366. doi: 10.1111/febs.14679.
Thylakoid membrane lipid sulfoquinovosyl-diacylglycerol (SQDG) is required for full functioning of photosystem II in Thermosynechococcus elongatus.
Nakajima Y, Umena Y, Nagao R, Endo K, Kobayashi K, Akita F, Suga M, Wada H, Noguchi T, Shen JR.
J Biol Chem. 2018 Sep 21;293(38):14786-14797. doi: 10.1074/jbc.RA118.004304.
Alterations of pigment composition and their interactions in response to different light conditions in the diatom Chaetoceros gracilis probed by time-resolved fluorescence spectroscopy.
Nagao R, Ueno Y, Yokono M, Shen JR, Akimoto S.
Biochim Biophys Acta Bioenerg. 2018 Jul;1859(7):524-530. doi: 10.1016/j.bbabio.2018.04.003.
A siphonous morphology affects light-harvesting modulation in the intertidal green macroalga Bryopsis corticulans (Ulvophyceae).
Giovagnetti V, Han G, Ware MA, Ungerer P, Qin X, Wang WD, Kuang T, Shen JR, Ruban AV.
Planta. 2018 Jun;247(6):1293-1306. doi: 10.1007/s00425-018-2854-5.
Fourier Transform Infrared Analysis of the S-State Cycle of Water Oxidation in the Microcrystals of Photosystem II.
Kato Y, Akita F, Nakajima Y, Suga M, Umena Y, Shen JR, Noguchi T.
J Phys Chem Lett. 2018 May 3;9(9):2121-2126. doi: 10.1021/acs.jpclett.8b00638.
Unique organization of photosystem I-light-harvesting supercomplex revealed by cryo-EM from a red alga.
Pi X, Tian L, Dai HE, Qin X, Cheng L, Kuang T, Sui SF, Shen JR.
Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4423-4428. doi: 10.1073/pnas.1722482115.
Structure of photosynthetic LH1-RC supercomplex at 1.9 Å resolution.
Yu LJ, Suga M, Wang-Otomo ZY, Shen JR.
Nature. 2018 Apr;556(7700):209-213. doi: 10.1038/s41586-018-0002-9.
Vyacheslav (Slava) Klimov (1945-2017): A scientist par excellence, a great human being, a friend, and a Renaissance man.
Allakhverdiev SI, Zharmukhamedov SK, Rodionova MV, Shuvalov VA, Dismukes C, Shen JR, Barber J, Samuelsson G, Govindjee.
Photosynth Res. 2018 Apr;136(1):1-16. doi: 10.1007/s11120-017-0440-5.
Rate-limiting steps in the dark-to-light transition of Photosystem II - revealed by chlorophyll-a fluorescence induction.
Magyar M, Sipka G, Kovács L, Ughy B, Zhu Q, Han G, Špunda V, Lambrev PH, Shen JR, Garab G.
Sci Rep. 2018 Feb 9;8(1):2755. doi: 10.1038/s41598-018-21195-2.
Structured near-infrared Magnetic Circular Dichroism spectra of the Mn4CaO5 cluster of PSII in T. vulcanus are dominated by Mn(IV) d-d 'spin-flip' transitions.
Morton J, Chrysina M, Craig VSJ, Akita F, Nakajima Y, Lubitz W, Cox N, Shen JR, Krausz E.
Biochim Biophys Acta Bioenerg. 2018 Feb;1859(2):88-98. doi: 10.1016/j.bbabio.2017.10.004.
Purification of fully active and crystallizable photosystem II from thermophilic cyanobacteria.
Kawakami K, Shen JR.
Methods Enzymol. 2018;613:1-16. doi: 10.1016/bs.mie.2018.10.002.
2017
Probing structure-function relationships in early events in photosynthesis using a chimeric photocomplex.
Nagashima KVP, Sasaki M, Hashimoto K, Takaichi S, Nagashima S, Yu LJ, Abe Y, Gotou K, Kawakami T, Takenouchi M, Shibuya Y, Yamaguchi A, Ohno T, Shen JR, Inoue K, Madigan MT, Kimura Y, Wang-Otomo ZY.
Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):10906-10911. doi: 10.1073/pnas.1703584114.
Functional role of Lys residues of Psb31 in electrostatic interactions with diatom photosystem II.
Nagao R, Suzuki T, Dohmae N, Shen JR, Tomo T.
FEBS Lett. 2017 Oct;591(20):3259-3264. doi: 10.1002/1873-3468.12830.
Isolation and characterization of PSI-LHCI super-complex and their sub-complexes from a red alga Cyanidioschyzon merolae.
Tian L, Liu Z, Wang F, Shen L, Chen J, Chang L, Zhao S, Han G, Wang W, Kuang T, Qin X, Shen JR.
Photosynth Res. 2017 Sep;133(1-3):201-214. doi: 10.1007/s11120-017-0384-9.
Ultrafast energy transfer within the photosystem II core complex.
Pan J, Gelzinis A, Chorošajev V, Vengris M, Senlik SS, Shen JR, Valkunas L, Abramavicius D, Ogilvie JP.
Phys Chem Chem Phys. 2017 Jun 14;19(23):15356-15367. doi: 10.1039/c7cp01673e.
Crystal structure and redox properties of a novel cyanobacterial heme protein with a His/Cys heme axial ligation and a Per-Arnt-Sim (PAS)-like domain.
Motomura T, Suga M, Hienerwadel R, Nakagawa A, Lai TL, Nitschke W, Kuma T, Sugiura M, Boussac A, Shen JR.
J Biol Chem. 2017 Jun 9;292(23):9599-9612. doi: 10.1074/jbc.M116.746263.
Biological approaches to artificial photosynthesis, fundamental processes and theoretical approaches: general discussion.
Artero V, Hammarström L, Fan F, Whang DR, Martinez J, Harriman A, Noguchi T, Karlsson J, Summers P, Itoh S, Cogdell R, Kibler A, Ehrmaier J, Tamiaki H, Fujita E, Shima S, Yoshino S, Inoue H, Wasielewski M, Corry T, Gust D, Cassiola F, Ishida H, Takagi K, Kang SO, Li C, Sun L, Park H, Hashimoto H, Amao Y, Son EJ, Kamiya N, Shen JR, Yamaguchi K.
Faraday Discuss. 2017 Jun 2;198:147-168. doi: 10.1039/c7fd90016c.
Molecular catalysts for artificial photosynthesis: general discussion.
Wang M, Artero V, Hammarström L, Martinez J, Karlsson J, Gust D, Summers P, Machan C, Brueggeller P, Windle CD, Kageshima Y, Cogdell R, Tolod KR, Kibler A, Apaydin DH, Fujita E, Ehrmaier J, Shima S, Gibson E, Karadas F, Harriman A, Inoue H, Kudo A, Takayama T, Wasielewski M, Cassiola F, Yagi M, Ishida H, Franco F, Kang SO, Nocera D, Li C, Di Fonzo F, Park H, Sun L, Setoyama T, Kang YS, Ishitani O, Shen JR, Son HJ, Masaoka S.
Faraday Discuss. 2017 Jun 2;198:353-395. doi: 10.1039/c7fd90017a.
Large-scale QM/MM calculations of the CaMn4O5 cluster in the S3 state of the oxygen evolving complex of photosystem II. Comparison between water-inserted and no water-inserted structures.
Shoji M, Isobe H, Nakajima T, Shigeta Y, Suga M, Akita F, Shen JR, Yamaguchi K.
Faraday Discuss. 2017 Jun 2;198:83-106. doi: 10.1039/c6fd00230g.
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Suga M, Akita F, Sugahara M, Kubo M, Nakajima Y, Nakane T, Yamashita K, Umena Y, Nakabayashi M, Yamane T, Nakano T, Suzuki M, Masuda T, Inoue S, Kimura T, Nomura T, Yonekura S, Yu LJ, Sakamoto T, Motomura T, Chen JH, Kato Y, Noguchi T, Tono K, Joti Y, Kameshima T, Hatsui T, Nango E, Tanaka R, Naitow H, Matsuura Y, Yamashita A, Yamamoto M, Nureki O, Yabashi M, Ishikawa T, Iwata S, Shen JR.
Nature. 2017 Mar 2;543(7643):131-135. doi: 10.1038/nature21400.
2016
Probing the Lysine Proximal Microenvironments within Membrane Protein Complexes by Active Dimethyl Labeling and Mass Spectrometry.
Zhou Y, Wu Y, Yao M, Liu Z, Chen J, Chen J, Tian L, Han G, Shen JR, Wang F.
Anal Chem. 2016 Dec 20;88(24):12060-12065. doi: 10.1021/acs.analchem.6b02502.
Oxygen-Evolving Porous Glass Plates Containing the Photosynthetic Photosystem II Pigment-Protein Complex.
Noji T, Kawakami K, Shen JR, Dewa T, Nango M, Kamiya N, Itoh S, Jin T.
Langmuir. 2016 Aug 9;32(31):7796-805. doi: 10.1021/acs.langmuir.6b02106.
Spatially Separated Photosystem II and a Silicon Photoelectrochemical Cell for Overall Water Splitting: A Natural-Artificial Photosynthetic Hybrid.
Wang W, Wang H, Zhu Q, Qin W, Han G, Shen JR, Zong X, Li C.
Angew Chem Int Ed Engl. 2016 Aug 1;55(32):9229-33. doi: 10.1002/anie.201604091.
Structure and energy transfer pathways of the plant photosystem I-LHCI supercomplex.
Suga M, Qin X, Kuang T, Shen JR.
Curr Opin Struct Biol. 2016 Aug;39:46-53. doi: 10.1016/j.sbi.2016.04.004.
Geometric and electronic structures of the synthetic Mn₄CaO₄ model compound mimicking the photosynthetic oxygen-evolving complex.
Shoji M, Isobe H, Shen JR, Yamaguchi K.
Phys Chem Chem Phys. 2016 Apr 28;18(16):11330-40. doi: 10.1039/c5cp07226c.
Novel Features of Eukaryotic Photosystem II Revealed by Its Crystal Structure Analysis from a Red Alga.
Ago H, Adachi H, Umena Y, Tashiro T, Kawakami K, Kamiya N, Tian L, Han G, Kuang T, Liu Z, Wang F, Zou H, Enami I, Miyano M, Shen JR.
J Biol Chem. 2016 Mar 11;291(11):5676-5687. doi: 10.1074/jbc.M115.711689.
Manganese Compounds as Water-Oxidizing Catalysts: From the Natural Water-Oxidizing Complex to Nanosized Manganese Oxide Structures.
Najafpour MM, Renger G, Hołyńska M, Moghaddam AN, Aro EM, Carpentier R, Nishihara H, Eaton-Rye JJ, Shen JR, Allakhverdiev SI.
Chem Rev. 2016 Mar 9;116(5):2886-936. doi: 10.1021/acs.chemrev.5b00340.
Crystallography: Resolution beyond the diffraction limit.
Shen JR.
Nature. 2016 Feb 11;530(7589):168-9. doi: 10.1038/530168a.
Chemical Equilibrium Models for the S3 State of the Oxygen-Evolving Complex of Photosystem II.
Isobe H, Shoji M, Shen JR, Yamaguchi K.
Inorg Chem. 2016 Jan 19;55(2):502-11. doi: 10.1021/acs.inorgchem.5b02471.
2015
Direct electron transfer from photosystem II to hematite in a hybrid photoelectrochemical cell.
Wang W, Wang Z, Zhu Q, Han G, Ding C, Chen J, Shen JR, Li C.
Chem Commun (Camb). 2015 Dec 11;51(95):16952-5. doi: 10.1039/c5cc06900a.
Special issue on Regulation of the Photosynthetic Systems in honor of Tingyun Kuang.
Lu C, Shen JR, Zhang L.
Photosynth Res. 2015 Dec;126(2-3):185-8. doi: 10.1007/s11120-015-0191-0.
Site-directed mutagenesis of amino acid residues of D1 protein interacting with phosphatidylglycerol affects the function of plastoquinone QB in photosystem II.
Endo K, Mizusawa N, Shen JR, Yamada M, Tomo T, Komatsu H, Kobayashi M, Kobayashi K, Wada H.
Photosynth Res. 2015 Dec;126(2-3):385-97. doi: 10.1007/s11120-015-0150-9.
Erratum to: The effect of lanthanum(III) and cerium(III) ions between layers of manganese oxide on water oxidation.
Najafpour MM, Isaloo MA, Hołyńska M, Shen JR, Allakhverdiev SI.
Photosynth Res. 2015 Dec;126(2-3):499. doi: 10.1007/s11120-015-0116-y.
The effect of lanthanum(III) and cerium(III) ions between layers of manganese oxide on water oxidation.
Najafpour MM, Isaloo MA, Hołyńska M, Shen JR, Allakhverdiev SI.
Photosynth Res. 2015 Dec;126(2-3):489-98. doi: 10.1007/s11120-015-0098-9.
Proton Matrix ENDOR Studies on Ca2+-depleted and Sr2+-substituted Manganese Cluster in Photosystem II.
Nagashima H, Nakajima Y, Shen JR, Mino H.
J Biol Chem. 2015 Nov 20;290(47):28166-28174. doi: 10.1074/jbc.M115.675496.
Strong Coupling between the Hydrogen Bonding Environment and Redox Chemistry during the S2 to S3 Transition in the Oxygen-Evolving Complex of Photosystem II.
Isobe H, Shoji M, Shen JR, Yamaguchi K.
J Phys Chem B. 2015 Oct 29;119(43):13922-33. doi: 10.1021/acs.jpcb.5b05740.
The biological water-oxidizing complex at the nano-bio interface.
Najafpour MM, Ghobadi MZ, Larkum AW, Shen JR, Allakhverdiev SI.
Trends Plant Sci. 2015 Sep;20(9):559-68. doi: 10.1016/j.tplants.2015.06.005.
Photosynthesis. Structural basis for energy transfer pathways in the plant PSI-LHCI supercomplex.
Qin X, Suga M, Kuang T, Shen JR.
Science. 2015 May 29;348(6238):989-95. doi: 10.1126/science.aab0214.
Zhang C, Chen C, Dong H, Shen JR, Dau H, Zhao J.
Science. 2015 May 8;348(6235):690-3. doi: 10.1126/science.aaa6550.
Biochemical and structural study of Arabidopsis hexokinase 1.
Feng J, Zhao S, Chen X, Wang W, Dong W, Chen J, Shen JR, Liu L, Kuang T.
Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):367-75. doi: 10.1107/S1399004714026091.
Comparison of nano-sized Mn oxides with the Mn cluster of photosystem II as catalysts for water oxidation.
Najafpour MM, Ghobadi MZ, Haghighi B, Tomo T, Shen JR, Allakhverdiev SI.
Biochim Biophys Acta. 2015 Feb;1847(2):294-306. doi: 10.1016/j.bbabio.2014.11.006.
Optical identification of the long-wavelength (700-1700 nm) electronic excitations of the native reaction centre, Mn4CaO5 cluster and cytochromes of photosystem II in plants and cyanobacteria.
Morton J, Akita F, Nakajima Y, Shen JR, Krausz E.
Biochim Biophys Acta. 2015 Feb;1847(2):153-161. doi: 10.1016/j.bbabio.2014.11.003.
The Structure of Photosystem II and the Mechanism of Water Oxidation in Photosynthesis.
Shen JR.
Annu Rev Plant Biol. 2015;66:23-48. doi: 10.1146/annurev-arplant-050312-120129.
Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses.
Suga M, Akita F, Hirata K, Ueno G, Murakami H, Nakajima Y, Shimizu T, Yamashita K, Yamamoto M, Ago H, Shen JR.
Nature. 2015 Jan 1;517(7532):99-103. doi: 10.1038/nature13991.
Isolation and characterization of a PSI-LHCI super-complex and its sub-complexes from a siphonaceous marine green alga, Bryopsis Corticulans.
Qin X, Wang W, Chang L, Chen J, Wang P, Zhang J, He Y, Kuang T, Shen JR.
Photosynth Res. 2015 Jan;123(1):61-76. doi: 10.1007/s11120-014-0039-z.
2014
The structure and activation of substrate water molecules in Sr(2+)-substituted photosystem II.
Chatterjee R, Milikisiyants S, Coates CS, Koua FH, Shen JR, Lakshmi KV.
Phys Chem Chem Phys. 2014 Oct 14;16(38):20834-43. doi: 10.1039/c4cp03082f.
Photosynthesis research for sustainability: keys to produce clean energy.
Allakhverdiev SI, Shen JR.
Biochim Biophys Acta. 2014 Sep;1837(9):1377-83. doi: 10.1016/j.bbabio.2014.07.002.
Water exchange in manganese-based water-oxidizing catalysts in photosynthetic systems: from the water-oxidizing complex in photosystem II to nano-sized manganese oxides.
Najafpour MM, Isaloo MA, Eaton-Rye JJ, Tomo T, Nishihara H, Satoh K, Carpentier R, Shen JR, Allakhverdiev SI.
Biochim Biophys Acta. 2014 Sep;1837(9):1395-410. doi: 10.1016/j.bbabio.2014.03.008.
A nano-sized manganese oxide in a protein matrix as a natural water-oxidizing site.
Najafpour MM, Ghobadi MZ, Haghighi B, Tomo T, Carpentier R, Shen JR, Allakhverdiev SI.
Plant Physiol Biochem. 2014 Aug;81:3-15. doi: 10.1016/j.plaphy.2014.01.020.
Editorial: unraveling the molecular dynamics of thylakoids under light stress.
Yamamoto Y, Shen JR, Takahashi Y.
Plant Cell Physiol. 2014 Jul;55(7):1203-5. doi: 10.1093/pcp/pcu085.
Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Hirata K, Shinzawa-Itoh K, Yano N, Takemura S, Kato K, Hatanaka M, Muramoto K, Kawahara T, Tsukihara T, Yamashita E, Tono K, Ueno G, Hikima T, Murakami H, Inubushi Y, Yabashi M, Ishikawa T, Yamamoto M, Ogura T, Sugimoto H, Shen JR, Yoshikawa S, Ago H.
Nat Methods. 2014 Jul;11(7):734-6. doi: 10.1038/nmeth.2962.
Photosynthesis: from natural to artificial.
Messinger J, Lubitz W, Shen JR.
Phys Chem Chem Phys. 2014 Jun 28;16(24):11810-1. doi: 10.1039/c4cp90053g.
Hydration of the oxygen-evolving complex of photosystem II probed in the dark-stable S1 state using proton NMR dispersion profiles.
Han G, Huang Y, Koua FH, Shen JR, Westlund PO, Messinger J.
Phys Chem Chem Phys. 2014 Jun 28;16(24):11924-35. doi: 10.1039/c3cp55232b.
Water oxidation chemistry of a synthetic dinuclear ruthenium complex containing redox-active quinone ligands.
Isobe H, Tanaka K, Shen JR, Yamaguchi K.
Inorg Chem. 2014 Apr 21;53(8):3973-84. doi: 10.1021/ic402340d.
Determination of the PS I content of PS II core preparations using selective emission: a new emission of PS II at 780nm.
Morton J, Hall J, Smith P, Akita F, Koua FH, Shen JR, Krausz E.
Biochim Biophys Acta. 2014 Jan;1837(1):167-77. doi: 10.1016/j.bbabio.2013.09.008.
2013
Evidence for an unprecedented histidine hydroxyl modification on D2-His336 in Photosystem II of Thermosynechoccocus vulcanus and Thermosynechoccocus elongatus.
Sugiura M, Koyama K, Umena Y, Kawakami K, Shen JR, Kamiya N, Boussac A.
Biochemistry. 2013 Dec 31;52(52):9426-31. doi: 10.1021/bi401213m.
Gold or silver deposited on layered manganese oxide: a functional model for the water-oxidizing complex in photosystem II.
Najafpour MM, Rahimi F, Sedigh DJ, Carpentier R, Eaton-Rye JJ, Shen JR, Allakhverdiev SI.
Photosynth Res. 2013 Nov;117(1-3):423-9. doi: 10.1007/s11120-013-9899-x.
Spectral and functional studies on siphonaxanthin-type light-harvesting complex of photosystem II from Bryopsis corticulans.
Wang W, Qin X, Sang M, Chen D, Wang K, Lin R, Lu C, Shen JR, Kuang T.
Photosynth Res. 2013 Nov;117(1-3):267-79. doi: 10.1007/s11120-013-9808-3.
Crystal structure at 1.5Å resolution of the PsbV2 cytochrome from the cyanobacterium Thermosynechococcus elongatus.
Suga M, Lai TL, Sugiura M, Shen JR, Boussac A.
FEBS Lett. 2013 Oct 1;587(19):3267-72. doi: 10.1016/j.febslet.2013.08.023.
Special issues on Photosynthesis Education honoring Govindjee.
Allakhverdiev SI, Shen JR, Edwards GE.
Photosynth Res. 2013 Oct;116(2-3):107-10. doi: 10.1007/s11120-013-9913-3.
Crystal structure of Psb31, a novel extrinsic protein of photosystem II from a marine centric diatom and implications for its binding and function.
Nagao R, Suga M, Niikura A, Okumura A, Koua FH, Suzuki T, Tomo T, Enami I, Shen JR.
Biochemistry. 2013 Sep 24;52(38):6646-52. doi: 10.1021/bi400770d.
Application of peptide gemini surfactants as novel solubilization surfactants for photosystems I and II of cyanobacteria.
Koeda S, Umezaki K, Noji T, Ikeda A, Kawakami K, Kondo M, Yamamoto Y, Shen JR, Taga K, Dewa T, Ito S, Nango M, Tanaka T, Mizuno T.
Langmuir. 2013 Sep 17;29(37):11667-80. doi: 10.1021/la402167v.
Photosystem II does not possess a simple excitation energy funnel: time-resolved fluorescence spectroscopy meets theory.
Shibata Y, Nishi S, Kawakami K, Shen JR, Renger T.
J Am Chem Soc. 2013 May 8;135(18):6903-14. doi: 10.1021/ja312586p.
Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation.
Koua FH, Umena Y, Kawakami K, Shen JR.
Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3889-94. doi: 10.1073/pnas.1219922110.
Electronic structure of S(2) state of the oxygen-evolving complex of photosystem II studied by PELDOR.
Asada M, Nagashima H, Koua FH, Shen JR, Kawamori A, Mino H.
Biochim Biophys Acta. 2013 Mar;1827(3):438-45. doi: 10.1016/j.bbabio.2012.12.011.
2012
Photosystem II and the unique role of bicarbonate: a historical perspective.
Shevela D, Eaton-Rye JJ, Shen JR, Govindjee.
Biochim Biophys Acta. 2012 Aug;1817(8):1134-51. doi: 10.1016/j.bbabio.2012.04.003.
Cationic state distribution over the chlorophyll d-containing P(D1)/P(D2) pair in photosystem II.
Saito K, Shen JR, Ishikita H.
Biochim Biophys Acta. 2012 Aug;1817(8):1191-5. doi: 10.1016/j.bbabio.2011.12.003.
Influence of the axial ligand on the cationic properties of the chlorophyll pair in photosystem II from Thermosynechococcus vulcanus.
Saito K, Shen JR, Ishikita H.
Biophys J. 2012 Jun 6;102(11):2634-40. doi: 10.1016/j.bpj.2012.04.016.
Deformation of chlorin rings in the Photosystem II crystal structure.
Saito K, Umena Y, Kawakami K, Shen JR, Kamiya N, Ishikita H.
Biochemistry. 2012 May 29;51(21):4290-9. doi: 10.1021/bi300428s.
2011
Short hydrogen bond between redox-active tyrosine Y(Z) and D1-His190 in the photosystem II crystal structure.
Saito K, Shen JR, Ishida T, Ishikita H.
Biochemistry. 2011 Nov 15;50(45):9836-44. doi: 10.1021/bi201366j.
Distribution of the cationic state over the chlorophyll pair of the photosystem II reaction center.
Saito K, Ishida T, Sugiura M, Kawakami K, Umena Y, Kamiya N, Shen JR, Ishikita H.
J Am Chem Soc. 2011 Sep 14;133(36):14379-88. doi: 10.1021/ja203947k.
Structural-functional role of chloride in photosystem II.
Rivalta I, Amin M, Luber S, Vassiliev S, Pokhrel R, Umena Y, Kawakami K, Shen JR, Kamiya N, Bruce D, Brudvig GW, Gunner MR, Batista VS.
Biochemistry. 2011 Jul 26;50(29):6312-5. doi: 10.1021/bi200685w.
S1-state model of the O2-evolving complex of photosystem II.
Luber S, Rivalta I, Umena Y, Kawakami K, Shen JR, Kamiya N, Brudvig GW, Batista VS.
Biochemistry. 2011 Jul 26;50(29):6308-11. doi: 10.1021/bi200681q.
Structure of the catalytic, inorganic core of oxygen-evolving photosystem II at 1.9 Å resolution.
Kawakami K, Umena Y, Kamiya N, Shen JR.
J Photochem Photobiol B. 2011 Jul-Aug;104(1-2):9-18. doi: 10.1016/j.jphotobiol.2011.03.017.
Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.
Umena Y, Kawakami K, Shen JR, Kamiya N.
Nature. 2011 May 5;473(7345):55-60. doi: 10.1038/nature09913.
Proton-coupled electron-transfer processes in photosystem II probed by highly resolved g-anisotropy of redox-active tyrosine YZ.
Matsuoka H, Shen JR, Kawamori A, Nishiyama K, Ohba Y, Yamauchi S.
J Am Chem Soc. 2011 Mar 30;133(12):4655-60. doi: 10.1021/ja2000566.
Roles of PsbI and PsbM in photosystem II dimer formation and stability studied by deletion mutagenesis and X-ray crystallography.
Kawakami K, Umena Y, Iwai M, Kawabata Y, Ikeuchi M, Kamiya N, Shen JR.
Biochim Biophys Acta. 2011 Mar;1807(3):319-25. doi: 10.1016/j.bbabio.2010.12.013.
Photosynthetic oxygen evolution in mesoporous silica material: adsorption of photosystem II reaction center complex into 23 nm nanopores in SBA.
Noji T, Kamidaki C, Kawakami K, Shen JR, Kajino T, Fukushima Y, Sekitoh T, Itoh S.
Langmuir. 2011 Jan 18;27(2):705-13. doi: 10.1021/la1032916.
Purification and crystallization of oxygen-evolving photosystem II core complex from thermophilic cyanobacteria.
Shen JR, Kawakami K, Koike H.
Methods Mol Biol. 2011;684:41-51. doi: 10.1007/978-1-60761-925-3_5.
Isolation of photosystem II-enriched membranes and the oxygen-evolving complex subunit proteins from higher plants.
Yamamoto Y, Leng J, Shen JR.
Methods Mol Biol. 2011;684:1-10. doi: 10.1007/978-1-60761-925-3_1.
2010
Binding and functional properties of five extrinsic proteins in oxygen-evolving photosystem II from a marine centric diatom, Chaetoceros gracilis.
Nagao R, Moriguchi A, Tomo T, Niikura A, Nakajima S, Suzuki T, Okumura A, Iwai M, Shen JR, Ikeuchi M, Enami I.
J Biol Chem. 2010 Sep 17;285(38):29191-9. doi: 10.1074/jbc.M110.146092.
Topological analysis of the extrinsic PsbO, PsbP and PsbQ proteins in a green algal PSII complex by cross-linking with a water-soluble carbodiimide.
Nagao R, Suzuki T, Okumura A, Niikura A, Iwai M, Dohmae N, Tomo T, Shen JR, Ikeuchi M, Enami I.
Plant Cell Physiol. 2010 May;51(5):718-27. doi: 10.1093/pcp/pcq042.
Structural and functional studies on Ycf12 (Psb30) and PsbZ-deletion mutants from a thermophilic cyanobacterium.
Takasaka K, Iwai M, Umena Y, Kawakami K, Ohmori Y, Ikeuchi M, Takahashi Y, Kamiya N, Shen JR.
Biochim Biophys Acta. 2010 Feb;1797(2):278-84. doi: 10.1016/j.bbabio.2009.11.001.
2009
Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography.
Kawakami K, Umena Y, Kamiya N, Shen JR.
Proc Natl Acad Sci U S A. 2009 May 26;106(21):8567-72. doi: 10.1073/pnas.0812797106.
Towards structural elucidation of eukaryotic photosystem II: Purification, crystallization and preliminary X-ray diffraction analysis of photosystem II from a red alga.
Adachi H, Umena Y, Enami I, Henmi T, Kamiya N, Shen JR.
Biochim Biophys Acta. 2009 Feb;1787(2):121-8. doi: 10.1016/j.bbabio.2008.11.004.
2008
Structures and functions of the extrinsic proteins of photosystem II from different species.
Enami I, Okumura A, Nagao R, Suzuki T, Iwai M, Shen JR.
Photosynth Res. 2008 Oct-Dec;98(1-3):349-63. doi: 10.1007/s11120-008-9343-9.
A brief introduction of Kimiyuki Satoh.
Enami I, Shen JR.
Photosynth Res. 2008 Oct-Dec;98(1-3):7-11. doi: 10.1007/s11120-008-9338-6.
Effects of phospholipase and lipase treatments on photosystem II core dimer from a thermophilic cyanobacterium.
Leng J, Sakurai I, Wada H, Shen JR.
Photosynth Res. 2008 Oct-Dec;98(1-3):469-78. doi: 10.1007/s11120-008-9335-9.
Acceptor side effects on the electron transfer at cryogenic temperatures in intact photosystem II.
Bao H, Zhang C, Kawakami K, Ren Y, Shen JR, Zhao J.
Biochim Biophys Acta. 2008 Sep;1777(9):1109-15. doi: 10.1016/j.bbabio.2008.04.044.
X-ray crystallographic and biochemical characterizations of a mutant photosystem II complex from Thermosynechococcus vulcanus with the psbTc gene inactivated by an insertion mutation.
Henmi T, Iwai M, Ikeuchi M, Kawakami K, Shen JR, Kamiya N.
J Synchrotron Radiat. 2008 May;15(Pt 3):304-7. doi: 10.1107/S0909049508002458.
2007
Aromatic structure of tyrosine-92 in the extrinsic PsbU protein of red algal photosystem II is important for its functioning.
Okumura A, Sano M, Suzuki T, Tanaka H, Nagao R, Nakazato K, Iwai M, Adachi H, Shen JR, Enami I.
FEBS Lett. 2007 Nov 13;581(27):5255-8. doi: 10.1016/j.febslet.2007.10.015.
Location of PsbY in oxygen-evolving photosystem II revealed by mutagenesis and X-ray crystallography.
Kawakami K, Iwai M, Ikeuchi M, Kamiya N, Shen JR.
FEBS Lett. 2007 Oct 16;581(25):4983-7. doi: 10.1016/j.febslet.2007.09.036.
Self-assembling peptide inspired by a barnacle underwater adhesive protein.
Nakano M, Shen JR, Kamino K.
Biomacromolecules. 2007 Jun;8(6):1830-5. doi: 10.1021/bm0612236.
2006
Lipids in oxygen-evolving photosystem II complexes of cyanobacteria and higher plants.
Sakurai I, Shen JR, Leng J, Ohashi S, Kobayashi M, Wada H.
J Biochem. 2006 Aug;140(2):201-9. doi: 10.1093/jb/mvj141.
g-Anisotropy of the S2-state manganese cluster in single crystals of cyanobacterial photosystem II studied by W-band electron paramagnetic resonance spectroscopy.
Matsuoka H, Furukawa K, Kato T, Mino H, Shen JR, Kawamori A.
J Phys Chem B. 2006 Jul 6;110(26):13242-7. doi: 10.1021/jp055008f.
2005
Quality control of Photosystem II: an FtsH protease plays an essential role in the turnover of the reaction center D1 protein in Synechocystis PCC 6803 under heat stress as well as light stress conditions.
Kamata T, Hiramoto H, Morita N, Shen JR, Mann NH, Yamamoto Y.
Photochem Photobiol Sci. 2005 Dec;4(12):983-90. doi: 10.1039/b506068k.
Distribution of the extrinsic proteins as a potential marker for the evolution of photosynthetic oxygen-evolving photosystem II.
Enami I, Suzuki T, Tada O, Nakada Y, Nakamura K, Tohri A, Ohta H, Inoue I, Shen JR.
FEBS J. 2005 Oct;272(19):5020-30. doi: 10.1111/j.1742-4658.2005.04912.x.
[Structure and function of photosystem II complex].
Kamiya N, Jian-Ren S.
Tanpakushitsu Kakusan Koso. 2005 Aug;50(10 Suppl):1174-9.
Key cofactors of photosystem II cores from four organisms identified by 1.7-K absorption, CD and MCD.
Arsköld SP, Smith PJ, Shen JR, Pace RJ, Krausz E.
Photosynth Res. 2005 Jun;84(1-3):309-16. doi: 10.1007/s11120-005-2135-6.
Pressure equilibrium and jump study on unfolding of 23-kDa protein from spinach photosystem II.
Tan CY, Xu CH, Wong J, Shen JR, Sakuma S, Yamamoto Y, Lange R, Balny C, Ruan KC.
Biophys J. 2005 Feb;88(2):1264-75. doi: 10.1529/biophysj.104.050435.
2004
An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes.
Hino T, Kanamori E, Shen JR, Kouyama T.
Acta Crystallogr D Biol Crystallogr. 2004 May;60(Pt 5):803-9. doi: 10.1107/S0907444904003233.
pH-induced conformational changes in the soluble manganese-stabilizing protein of photosystem II.
Weng J, Tan C, Shen JR, Yu Y, Zeng X, Xu C, Ruan K.
Biochemistry. 2004 Apr 27;43(16):4855-61. doi: 10.1021/bi049903l.
The orientations of core antenna chlorophylls in photosystem II are optimized to maximize the quantum yield of photosynthesis.
Vasil'ev S, Shen JR, Kamiya N, Bruce D.
FEBS Lett. 2004 Mar 12;561(1-3):111-6. doi: 10.1016/S0014-5793(04)00133-4.
Isolation of photosystem II-enriched membranes and the oxygen-evolving complex subunit proteins from higher plants.
Yamamoto Y, Sakuma S, Shen JR.
Methods Mol Biol. 2004;274:29-36. doi: 10.1385/1-59259-799-8:029.
2003
Extrinsic proteins of photosystem II: an intermediate member of PsbQ protein family in red algal PS II.
Ohta H, Suzuki T, Ueno M, Okumura A, Yoshihara S, Shen JR, Enami I.
Eur J Biochem. 2003 Oct;270(20):4156-63. doi: 10.1046/j.1432-1033.2003.03810.x.
Comparison of binding and functional properties of two extrinsic components, Cyt c550 and a 12 kDa protein, in cyanobacterial PSII with those in red algal PSII.
Enami I, Iwai M, Akiyama A, Suzuki T, Okumura A, Katoh T, Tada O, Ohta H, Shen JR.
Plant Cell Physiol. 2003 Aug;44(8):820-7. doi: 10.1093/pcp/pcg106.
Dynamic Interaction between the D1 protein, CP43 and OEC33 at the lumenal side of photosystem II in spinach chloroplasts: evidence from light-induced cross-Linking of the proteins in the donor-side photoinhibition.
Henmi T, Yamasaki H, Sakuma S, Tomokawa Y, Tamura N, Shen JR, Yamamoto Y.
Plant Cell Physiol. 2003 Apr;44(4):451-6. doi: 10.1093/pcp/pcg049.
Near-IR irradiation of the S2 state of the water oxidizing complex of photosystem II at liquid helium temperatures produces the metalloradical intermediate attributed to S1Y(Z*).
Koulougliotis D, Shen JR, Ioannidis N, Petrouleas V.
Biochemistry. 2003 Mar 18;42(10):3045-53. doi: 10.1021/bi027051o.
ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC.
Hayashi F, Suzuki H, Iwase R, Uzumaki T, Miyake A, Shen JR, Imada K, Furukawa Y, Yonekura K, Namba K, Ishiura M.
Genes Cells. 2003 Mar;8(3):287-96. doi: 10.1046/j.1365-2443.2003.00633.x.
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
Kamiya N, Shen JR.
Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):98-103. doi: 10.1073/pnas.0135651100.
2002
Comparison of the structure of the extrinsic 33 kDa protein from different organisms.
Tohri A, Suzuki T, Okuyama S, Kamino K, Motoki A, Hirano M, Ohta H, Shen JR, Yamamoto Y, Enami I.
Plant Cell Physiol. 2002 Apr;43(4):429-39. doi: 10.1093/pcp/pcf053.
2001
Functional analysis of psbV and a novel c-type cytochrome gene psbV2 of the thermophilic cyanobacterium Thermosynechococcus elongatus strain BP-1.
Katoh H, Itoh S, Shen JR, Ikeuchi M.
Plant Cell Physiol. 2001 42:599-607
2000年以前
1. Shen J.-R., Satoh K. and Katoh S. (1988) Calcium content of oxygen-evolving Photosystem II preparations from higher plants. Effects of NaCl treatment. Biochim. Biophys. Acta 933, 358-364.
2. Shen J.-R., Satoh K. and Katoh S. (1988) Isolation of an oxygen-evolving Photosystem II preparation containing only one tightly bound calcium atom from a chlorophyll b-deficient mutant of rice. Biochim. Biophys. Acta 936, 386-394.
3. Enami I., Miyaoka T., Mochizuki Y., Shen J.-R., Satoh K. and Katoh S. (1989) Nearest neighbor relationships among constituent proteins of oxygen-evolving Photosystem II membranes: Binding and function of the extrinsic 33 kDa protein. Biochim. Biophys. Acta 973, 35-40.
4. Enami I., Kamino K., Shen J.-R., Satoh K. and Katoh S. (1989) Isolation and characterization of Photosystem II complexes which lack light-harvesting chlorophyll a/b proteins but retain three extrinsic proteins related to oxygen evolution from spinach. Biochim. Biophys. Acta 977, 33-39.
5. Shen J.-R., Terashima I. and Katoh, S. (1990) Cause for dark, chilling-induced inactivation of photosynthetic oxygen-evolving system in cucumber leaves. Plant Physiol. 93, 1354-1357.
6. Shen J.-R. and Katoh S. (1991) Inactivation and calcium-dependent reactivation of oxygen evolution in photosystem II preparations treated at pH 3.0 or with high concentrations of NaCl. Plant Cell Physiol. 32, 439-446.
7. Shen J.-R. and Inoue Y. (1991) Low pH-induced dissociation of three extrinsic proteins from O2-evolving photosystem II. Plant Cell Physiol. 32, 453-457.
8. Shen J.-R., Ikeuchi M. and Inoue Y. (1992) Stoichiometric association of extrinsic cytochrome c-550 and 12 kDa protein with a highly purified oxygen-evolving photosystem II core complex from Synechococcus vulcanus. FEBS Lett. 301, 145-149.
9. Shen J.-R., Ono T.-A. and Inoue Y. (1992) The role of light in formation of modified S2-state upon low pH-treatment of oxygen-evolving Photosystem II. Photosyn. Res. 32, 71-78.
10. Burnap R.L., Shen, J.-R., Jursinic P.A., Inoue Y. and Sherman L. (1992) Oxygen yield and thermoluminescence characteristics of a cyanobacterium lacking the manganese-stabilizing protein of photosystem II. Biochemistry 31, 7404-7410.
11. Shen J.-R. and Inoue Y. (1993) Binding and functional properties of two new extrinsic components, cytochrome c-550 and a 12 kDa protein, in cyanobacterial photosystem II. Biochemistry 32, 1825-1832.
12. Shen J.-R. and Inoue Y. (1993) Cellular localization of cytochrome c-550. Its specific association with cyanobacterial photosystem II. J. Biol. Chem. 268, 20408-20413.
13. Gleiter H.M., Haag E., Shen J.-R., Eaton-Rye J.J., Inoue Y., Vermaas W.F.J. and Renger G. (1994) Functional characterization of mutant strains of the cyanobacterium Synechocystis sp. PCC 6803 lacking short domains within the large, lumen-exposed loop of the chlorophyll protein CP47 in photosystem II. Biochemistry 33, 12063-12071.
14. Burnap R.L., Qian M., Shen J.-R., Inoue Y. and Sherman L. (1994) Role of disulfide linkage and putative intermolecular binding residues in the stability and binding of the extrinsic manganese-stabilizing protein to the photosystem II reacetion center. Biochemistry 33, 13712-13718.
15. Han K.-C., Shen J.-R., Ikeuchi M. and Inoue Y. (1994) Chemical crosslinking studies of extrinsic proteins in cyanobacterial photosystem II. FEBS Lett. 355, 121-124.
16. Shen J.-R., Vermaas W. and Inoue Y. (1995) The role of cytochrome c-550 as studied through reverse genetics and mutant characterization in Synechocystis sp. PCC 6803. J. Biol. Chem. 270, 6901-6907.
17. Gleiter H.M., Haag E., Shen J.-R., Eatoh-Rye J.J., Seeliger A.G., Inoue Y., Vermaas W.F.J. and Renger G. (1995) Involvement of the CP47 protein in stabilization and photoactivation of a functional water-oxidizing complex in the cyanobacterium Synechocystis sp. PCC 6803. Biochemistry 34, 6847-6856.
18. Shen J-.R., Burnap R.L. and Inoue Y. (1995) An independent role of cytochrome c-550 in cyanobacterial photosystem II as revealed by double-deletion mutagenesis of the psbO and psbV genes in Synechocystis sp. PCC 6803. Biochemistry 34, 12661-12668.
19. Enami I., Murayama H., Ohta, H., Kamo, M., Nakazato K. and Shen J.-R. (1995) Isolation and characterizaton of a photosystem II complex from a red alga Cyanidium caldarium: Association of cytochrome c-550 and a 12 kDa protein with the complex. Biochim. Biophys. Acta 1232, 208-216.
20. Miura T., Shen J.-R., Takahashi S., Kamo M., Nakamura E., Ohta H., Kamei A., Inoue Ya., Domae N., Takio K., Nakazato K., Inoue Yo. and Enami I. (1997) Identification of domains on the extrinsic 33-kDa protein possibly involved in electrostatic interaction with photosystem II complex by means of chemical modification. J. Biol. Chem. 272, 3788-3798.
21. Enami I., Tohri A., Kamo M., Ohta H. and Shen J.-R. (1997) Identification of domains on the 43 kDa chlorophyll-carrying protein (CP43) that are shielded from tryptic attack by binding of the extrinsic 33 kDa protein with photosystem II complex. Biochim. Biophys. Acta 1320, 17-26.
22. Shen J.-R., Ikeuchi M. and Inoue Y. (1997) Analysis of the psbU gene encoding the 12 kDa extrinsic protein of photosystem II and studies on its role by deletion mutagenesis inSynechocystis sp. PCC 6803. J. Biol. Chem. 272, 17821-17826.
23. Shen J.-R., Qian M., Inoue Y. and Burnap R.L. (1998) Functional characterization of Synechocystis sp. PCC 6803 ∆psbU and ∆psbV mutants reveals important roles of cytochrome c-550 in cyanobacterial PSII. Biochemistry 37, 1551-1558.
24. Enami I, Kikuchi S., Fukuda T., Ohta H. and Shen J.-R. (1998) Binding and functional properties of four extrinsic proteins of photosystem II from a red alga, cyanidium caldarium as studied by release-reconstitution experiments. Biochemistry 37, 2787-2793.
25. Ohta H., Okumura A., Okuyama S., Akiyama A., Iwai M., Yoshihara S., Shen J.-R., Kamo M. and Enami I. (1999) Cloning, expression of the psbU gene, and functional studies of the recombinant 12-kDa protein of photosystem II from a red alga Cyanidium caldarium. Biochem. Biophys. Res. Comm. 260, 245-250.
26. Al-Khaldi, S., Coker, J., Shen, J.-R., and R. L. Burnap (2000) Characterization of site-directed mutants in manganese-stabilizing protein (MSP) of Synechocystis sp. PCC 6803 unable to grow photoautotrophically in the absence of cytochrome c-550. Plant Mol. Biol. 43, 33-41.
27. Shen J.-R. and Kamiya N. (2000) Crystallization and the crystal properties of the oxygen-evolving photosystem II from Synechococcus vulcanus. Biochemistry, 39, 14739-14744.
28. Enami I., Yoshihara S., Tohri A., Okumura A., Ohta H. and Shen J.-R. (2000) Cross-reconstitution of various extrinsic proteins and photosystem II complexes from cyanobacteria, red algae and higher plants. Plant Cell Physiol. 41, 1354-1364.