Publications

Ibrahim, Y., Dorignac, J., Geniet, F., Chevalier, C., Walter,  J.-C., Walliser N.-O., Parmeggiani, A., and Palmeri, J., 2023. Chain decay and rates disorder in the totally asymmetric simple exclusion process. Preprint arXiv:2310.00329. Article Link 

Franco-Oñate, M.J., Parmeggiani, A., Dorignac, J., Geniet, F., Walter, J.C., Pedaci, F., Nord, A.L., Palmeri, J. and Walliser, N.O., 2023. Signature of (anti) cooperativity in the stochastic fluctuations of small systems: application to the bacterial flagellar motor. Under review in Nat. Comm. Preprint arXiv:2307.00636. Article Link

Chevalier, C., Dorignac, J., Ibrahim, Y., Choquet, A., David, A., Ripoll, J., Rivals, E., Geniet, F., Walliser, N.O., Palmeri, J., Parmeggiani, A., and Walter, J.-C., 2023. Physical modeling of ribosomes along messenger RNA: estimating kinetic parameters from ribosome profiling experiments using a ballistic model. PLoS Computational Biology 19.10: e1011522. Article Link

Perez-Carrasco, R., Franco-Oñate, M.J., Walter, J.C., Dorignac, J., Geniet, F., Palmeri, J., Parmeggiani, A., Walliser, N.O. and Nord, A.L., 2022. Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor. Science Advances, 8(12), p.eabl8112. Article Link

Walter, J.C., Lepage, T., Dorignac, J., Geniet, F., Parmeggiani, A., Palmeri, J., Bouet, J.Y. and Junier, I., 2021. Supercoiled DNA and non-equilibrium formation of protein complexes: A quantitative model of the nucleoprotein ParB S partition complex. PLoS Computational Biology, 17(4), p.e1008869. Article Link

Dauloudet, O., Neri, I., Walter, J.C., Dorignac, J., Geniet, F. and Parmeggiani, A., 2021. Modelling the effect of ribosome mobility on the rate of protein synthesis. The European Physical Journal E, 44, pp.1-15. Article Link

Walter, J.-C., Rech, J., Walliser, N.O., Dorignac, J., Geniet, F., Palmeri, J., Parmeggiani, A. and Bouet, J.Y., 2020. Physical modeling of a sliding clamp mechanism for the spreading of ParB at short genomic distance from bacterial centromere sites. iScience 23. Article Link

David, G., Walter, J.-C., Broedersz, C.P., Dorignac, J., Geniet, F., Parmeggiani, A., Walliser, N.O. and Palmeri, J., 2020. Phase separation of polymer-bound particles induced by loop-mediated one dimensional effective long-range interactions. Physical Review Research, 2(3), p.033377. Article Link

Guilhas, B., Walter, J.C., Rech, J., David, G., Walliser, N.O., Palmeri, J., Mathieu-Demaziere, C., Parmeggiani, A., Bouet, J.Y., Le Gall, A. and Nollmann, M., 2020. ATP-driven separation of liquid phase condensates in bacteria. Molecular Cell, 79(2), pp.293-303. Article Link

Walter, J.C., 2020. Modeling the formation and positioning of intracellular macromolecular assemblies: Application to bacterial DNA segregation (HDR, Doctoral dissertation, Université de Montpellier). Thesis Link

Debaugny, R.E., Sanchez, A., Rech, J., Labourdette, D., Dorignac, J., Geniet, F., Palmeri, J., Parmeggiani, A., Boudsocq, F., Anton Leberre, V., Walter, J.C., and J.Y. Bouet, 2018. A conserved mechanism drives partition complex assembly on bacterial chromosomes and plasmids. Molecular systems biology, 14(11), p.e8516. Article Link

Walter, J.C., Walliser, N.O., David, G., Dorignac, J., Geniet, F., Palmeri, J., Parmeggiani, A., Wingreen, N.S. and Broedersz, C.P., 2018. Looping and clustering model for the organization of protein-DNA complexes on the bacterial genome. New Journal of Physics, 20(3), p.035002. Article Link

Walter, J.C., Dorignac, J., Lorman, V., Rech, J., Bouet, J.Y., Nollmann, M., Palmeri, J., Parmeggiani, A. and Geniet, F., 2017. Surfing on protein waves: proteophoresis as a mechanism for bacterial genome partitioning. Physical review letters, 119(2), p.028101. Article Link

Sakaue, T., Walter, J.C., Carlon, E. and Vanderzande, C., 2017. Non-Markovian dynamics of reaction coordinate in polymer folding. Soft Matter, 13(17), pp.3174-3181. Article Link

Laleman, M., Baiesi, M., Belotserkovskii, B.P., Sakaue, T., Walter, J.C. and Carlon, E., 2016. Torque-induced rotational dynamics in polymers: Torsional blobs and thinning. Macromolecules, 49(1), pp.405-414. Article Link

Sanchez, A., Cattoni, D.I., Walter, J.C., Rech, J., Parmeggiani, A., Nollmann, M. and Bouet, J.Y., 2015. Stochastic self-assembly of ParB proteins builds the bacterial DNA segregation apparatus. Cell systems, 1(2), pp.163-173. Article Link

Walter, J.C. and Barkema, G.T., 2015. An introduction to Monte Carlo methods. Physica A: Statistical Mechanics and its Applications, 418, pp.78-87. Article Link

Walter, J.C., Laleman, M., Baiesi, M. and Carlon, E., 2014. Rotational dynamics of entangled polymers. The European Physical Journal Special Topics, 223, pp.3201-3213. Article Link

Ciandrini, L., Neri, I., Walter, J.C., Dauloudet, O. and Parmeggiani, A., 2014. Motor protein traffic regulation by supply–demand balance of resources. Physical biology, 11(5), p.056006. Article Link

Walter, J.C., Baiesi, M., Carlon, E. and Schiessel, H., 2014. Unwinding dynamics of a helically wrapped polymer. Macromolecules, 47(14), pp.4840-4846. Article Link

Walter, J.C., Baiesi, M., Barkema, G.T. and Carlon, E., 2013. Unwinding relaxation dynamics of polymers. Physical Review Letters, 110(6), p.068301. Article Link

Berche, B., Kenna, R. and Walter, J.C., 2012. Hyperscaling above the upper critical dimension. Nuclear Physics B, 865(1), pp.115-132. Article Link

Hadiwikarta, W.W., Walter, J.C., Hooyberghs, J. and Carlon, E., 2012. Probing hybridization parameters from microarray experiments: nearest-neighbor model and beyond. Nucleic acids research, 40(18), pp.e138-e138. Article Link

Walter, J.C., Ferrantini, A., Carlon, E. and Vanderzande, C., 2012. Fractional Brownian motion and the critical dynamics of zipping polymers. Physical Review E, 85(3), p.031120. Article Link

Walter, J.C. and Chatelain, C., 2012. Relaxation at finite temperature in fully frustrated Ising models. Journal of Statistical Mechanics: Theory and Experiment, 2012(02), p.P02010. Article Link

Walter, J.C., Barkema, G.T. and Carlon, E., 2011. The equilibrium winding angle of a polymer around a bar. Journal of Statistical Mechanics: Theory and Experiment, 2011(10), p.P10020. Article Link

Walter, J.C., Kroll, K.M., Hooyberghs, J. and Carlon, E., 2011. Nonequilibrium effects in DNA microarrays: a multiplatform study. The Journal of Physical Chemistry B, 115(20), pp.6732-6739. Article Link

Walter, J.C. and Chatelain, C., 2009. Numerical investigation of the ageing of the fully frustrated XY model. Journal of Statistical Mechanics: Theory and Experiment, 2009(10), p.P10017.  Article Link

Walter, J.C., 2009. Etude numérique des corrections d'échelle au comportement dominant à l'équilibre et hors de l'équilibre (Doctoral dissertation, Université Henri Poincaré-Nancy I). Thesis Link

Berche, B., Chatelain, C., Dhall, C., Kenna, R., Low, R. and Walter, J.C., 2008. Extended scaling in high dimensions. Journal of Statistical Mechanics: Theory and Experiment, 2008(11), p.P11010. Article Link

Walter, J.C. and Chatelain, C., 2008. Logarithmic corrections in the ageing of the fully frustrated ising model. Journal of Statistical Mechanics: Theory and Experiment, 2008(07), p.P07005. Article Link