Viana, R., Couceiro, D., Newton, W., Coutinho, L., Dias, O., Coelho, C., Teixeira, M.C., “Unveiling new features of the human pathogen Cryptococcus neoformans through the reconstruction and exploitation of a dedicated Genome-Scale Metabolic Model”, Computational and Structural Biotechnology Journal, 27:2336-2346, 2025. 

Zolotareva, M., Cascalheira, F., Caneiras, C., Bárbara, C., Caetano, D.M., Teixeira, M.C., "In the flow of molecular, miniaturized fungal diagnosis", Trends in Biotechnology, 42(12):1628-1643, 2024.

Viana, R., Carreiro, T., Couceiro, D., Dias, O., Rocha, I., Teixeira, M.C., “Metabolic reconstruction of the human pathogen Candida auris: using a cross-species approach for drug target prediction”, FEMS Yeast Research, 23: foad045, 2023 (BEST 2023 FEMS YEAST RESEARCH PAPER AWARD!).

Okamoto, M., Nakano, K., Takahashi-Nakaguchi, A., Sasamoto, K., Yamaguchi, M., Teixeira, M.C., Chibana, H., “In Candida glabrata, ERMES Component GEM1 Controls Mitochondrial Morphology, mtROS, and Drug Efflux Pump Expression, Resulting in Azole Susceptibility”, Journal of Fungi, 9(2), 240, 2023.

Teixeira, M.C.**, Viana, R., Palma, M., Oliveira, J., Galocha, M., Mota, M.N., Couceiro, D., Pereira, M.G., Antunes, M., Costa, I.V., Pais, P., Parada, C., Chaouiya, C., Sá-Correia, I.**, Monteiro, P.T.**, “YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis”, Nucleic Acids Research, 51(D1):D785-D791, 2023. 

Almeida, J.F., Marques, M., Oliveira, V., Egas, C., Mil-Homens, D., Viana, R., Cleary, D.F.R., Huang, Y.M., Fialho, A.M., Teixeira, M.C., Gomes, N.C.M., Costa, R., Keller-Costa, T., 2023, “Marine sponge and octocoral-associated bacteria show versatile secondary metabolite biosynthesis capacities and antimicrobial activities against human pathogens”, Marine Drugs, 21:34. 

Galocha, M., Viana, R., Pais, P., Silva-Dias, A., Cavalheiro, M., Miranda, I.M., Van Ende, M., Souza, C.S., Costa, C., Branco, J., Soares, C.M., Van Dijck, P., Rodrigues, A.G.**, Teixeira, M.C.**, “Genomic evolution towards azole resistance in Candida glabrata clinical isolates unveils the importance of CgHxt4/6/7 in azole accumulation”, Communications Biology, 5: 1118, 2022. 

Pais, P.*, Galocha, M.*, Takahashi-Nakaguchi, A., Chibana, H., Teixeira, M.C., “Multiple genome analysis of Candida glabrata clinical isolates renders new insights into genetic diversity and drug resistance determinants”, Microbial Cell, 9(11): 174-189, 2022. 

Munro, C.A., Teixeira, M.C., “Yeast pathogenesis and drug resistance: the beauty of the BYeast”, FEMS Yeast Research (Editorial), 22:foac029, 2022. 

Silva, S.G., Paula, P., Da Silva, J.P., Mil-Homens, D., Teixeira, M.C., Fialho, A.M., Costa, R., Keller-Costa, T., “Insights into the antimicrobial activities and metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) species from the rare marine biosphere”, Marine Drugs, 20(7): 423, 2022. 

Okamoto, M., Takahashi-Nakaguchi, A., Tejima, K., Sasamoto, K., Yamaguchi, M., Aoyama, T., Nagi, M., Tanabe, K., Miyazaki, Y., Nakayama, H., Sasakawa, C., Kajiwara, S., Brown, A.J.P., Teixeira, M.C., Chibana, H., “Erg25 controls host-cholesterol uptake mediated by Aus1p-associated sterol-rich membrane domains in Candida glabrata”, Frontiers in Cellular and Developmental Biology, 10:820675, 2022.

Viana, R., Couceiro, D., Carreiro, T., Dias, O., Rocha, I., Teixeira, M.C., "A Genome-scale metabolic model for the human pathogen Candida parapsilosis and Early Identification of Putative Novel Antifungal Drug Targets", Genes, 13: 303, 2022.

Pais, P., Galocha, M., California, R., Viana, R., Ola, M., Okamoto, M., Chibana, H., Butler, G., Teixeira, M.C., “Characterization of the Candida glabrata transcription factor CgMar1: role in azole susceptibility”, Journal of Fungi, 8: 61, 2022.

Cavalheiro, M., Pereira, D., Formosa-Dague, C., Leitão, C., Pais, P., Ndlovu, E., Viana, R., Pimenta, A.I., Santos, R., Takahashi-Nakaguchi, A., Michiyo Okamoto , Mihaela Ola , Chibana, H., Fialho, A.M., Butler, G., Dague, E.**, Teixeira, M.C.**, “From the first touch to biofilm establishment by the human pathogen Candida glabrata: a genome-wide to nanoscale view”, Communications Biology, 4: 886, 2021.

Oliveira, J., Antunes, M., Godinho, C.P., Teixeira, M.C., Sá-Correia, I., Monteiro, P.T., “From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon”, BMC Bioinformatics, 22: 399, 2021. 

Godinho, C.P., Palma, M., Oliveira, J., Mota, M.N., Antunes, M, Teixeira, M.C., Monteiro, P.T., Sá-Correia, I., “The N.C.YEASTRACT and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts”, FEMS Yeast Research, 21: foab045, 2021. 

Cavalheiro, M., Romão, D., Santos, R., Mil-Homens, D., Pais, P., Costa, C., Galocha, M., Pereira, D., Takahashi-Nakaguchi, A., Chibana, H., Fialho, A.M., Teixeira, M.C., “Role of CgTpo4 in polyamine and antimicrobial peptide resistance: determining virulence in Candida glabrata”, International Journal of Molecular Sciences, 22: 1376, 2021.

Pais, P.*, Oliveira, J.*, Almeida, V., Yilmaz M., Monteiro P.T.**, Teixeira, M.C.**, “Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: clues on host adaptation and probiotic activity based on promoter sequence variability”, Genomics, 113: 530-539, 2021.

Klemm, S., Baum, M., Qiu, H., Nan, Z., Cavalheiro, M., Teixeira, M.C., Tendero, C., Gapeeva, A., Adelung, R., Dague, E., Castelain, M., Formosa-Dague, C., “Development of Polythiourethane/ZnO-based anti-fouling materials and evaluation of the adhesion of Staphylococcus aureus and Candida glabrata using single-cell force spectroscopy”, Nanomaterials, 11: 271, 2021.

Galocha, M., Costa, I.V., Teixeira, M.C., “Carrier-Mediated Drug Uptake in Fungal Pathogens”, Genes, 11: 1324, 2020. 

Pais, P.*, Vagueiro, S.*, Mil-Homens, D., Pimenta, A.I., Viana, R., Okamoto, M., Chibana, H., Fialho, A.M., Teixeira, M.C., “A new regulator in the crossroads of oxidative stress resistance and virulence in Candida glabrata: the transcription factor CgTog1”, Virulence, 11(1):1522-1538, 2020.

Monteiro, P.T., Pedreira, T., Galocha, M., Teixeira, M.C.**, Chaouiya, C.**, “Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae”, Scientific Reports, 10: 17744, 2020.

Viana, R., Dias, O., Lagoa, D., Galocha, M., Rocha, I.**, Teixeira, M.C.**, “Genome-scale metabolic model of the human pathogen Candida albicans: a platform for drug target prediction”, Journal of Fungi, 6: 171, 2020.

Pais, P., California, R., Galocha, M., Viana, R., Ola, M., Cavalheiro, M., Takahashi-Nakaguchi, A., Chibana, H., Butler, G., Teixeira, M.C., “Candida glabrata transcription factor Rpn4 mediates fluconazole resistance through regulation of ergosterol biosynthesis and plasma membrane permeability”, Antimicrobial Agents and Chemotherapy, 64: e00554-20, 2020. 

Pais, P.*, Almeida, V.*, Yilmaz, M., Teixeira, M.C., “Saccharomyces boulardii: what makes it tick as successful probiotic?”, Journal of Fungi, 6: 78, 2020. 

Santos, R.*, Cavalheiro, M.*, Costa, C., Takahashi-Nakaguchi, A., Okamoto, M., Chibana, H., Teixeira, M.C., “Screening the Drug:H+ Antiporter family for a role in biofilm formation in Candida glabrata”, Frontiers in Cellular and Infection Microbiology, 10: 29, 2020.

Monteiro, P.T., Oliveira, J., Pais, P., Antunes, M., Palma, M., Cavalheiro, M., Galocha, M., Godinho, C.P., Martins, L.C., Bourbon, N., Mota, M.N., Ribeiro, R.A., Viana, R., Sá-Correia, I., Teixeira, M.C., “YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts”, Nucleic Acids Research, 48:D642-D649, 2020.

Galocha, M., Pais, P., Cavalheiro, M., Pereira, D., Viana, R., Teixeira, M.C., “Divergent approaches to virulence in C. albicans and C. glabrata: two sides of the same coin”, International Journal of Molecular Sciences, 20(9). pii: E2345, 2019.

Pais, P., Galocha, M., Miranda, I.M., Rodrigues, A.G., Teixeira, M.C., “Draft genome sequences from three clinical isolates of the pathogenic yeast Candida glabrata”, Microbial Resource Announcements, 8(35). pii: e00278-19, 2019.

Pais, P., Galocha, M., Viana, R., Cavalheiro, M., Pereira, D., Teixeira, M.C., “Microevolution of the pathogenic yeasts Candida albicans and Candida glabrata during antifungal therapy and host infection”, Microbial Cell, 6(3): 142 – 159, 2019.

Cavalheiro, M., Costa, C., Silva-Dias, A., Miranda, I.M., Wang, C., Pais, P., Pinto, S.N., Mil-Homens, D., Sato-Okamoto, M., Takahashi-Nakaguchi, A., Silva, R.M., Mira, N.P., Fialho, A.M., Chibana, H., Rodrigues, A.G., Butler, G., Teixeira, M.C., “Unveiling the mechanisms of in vitro evolution towards fluconazole resistance of a Candida glabrata clinical isolate: a transcriptomics approach”, Antimicrobial Agents and Chemotherapy, 63: e00995-18, 2019. 

Cavalheiro, M., Pais, P., Galocha, M., Teixeira, M.C., “Host-pathogen interactions mediated by MDR transporters in fungi: as pleiotropic as it gets!”, Genes, 9: 332, 2018. 

Cavalheiro, M., Teixeira, M.C., “Candida biofilms: threats, challenges and promising strategies", Frontiers in Medicine, 5: 28, 2018. 

Teixeira, M.C., Monteiro, P.T., Palma, M., Catarina, C., Godinho, C.P., Pais, P., Cavalheiro, M., Antunes, M., Lemos, A., Pedreira, T., Sá-Correia, I., YEASTRACT, an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae. Nucleic Acids Research, 46: D348-D353, 2018. 

Romão, D.*, Cavalheiro, M.*, Mil-Homens, D., Santos, R., Pais, P., Costa, C., Takahashi-Nakaguchi, A., Fialho, A.M., Hiroji Chibana, H.**, Teixeira, M.C.**, “A new determinant of Candida glabrata virulence: the acetate exporter CgDtr1", Frontiers in Cellular and Infection Microbiology, 7: 473, 2017. 

Godinho, C.P., Mira, N.P., Cabrito, T.R., Teixeira, M.C., Alasoo, K., Guerreiro, J. F., Sá-Correia, I., “Yeast response and tolerance to benzoic acid involves the Gcn4- and Stp1- regulated multidrug/multixenobiotic resistance transporter Tpo1”, Applied Microbiology and Biotechnology, 101(12): 5005-5018, 2017. 

Santos, R., Costa, C., Mil-Homens, D., Romão, D., de Carvalho, C.C.R., Pais, P., Mira, N.P., Fialho, A.M., Teixeira, M.C., “The multidrug resistance transporters CgTpo1_1 and CgTpo1_2 play a role in virulence and biofilm formation in the human pathogen Candida glabrata", Cellular Microbiology, 19(5): e12686, 2017. 

Monteiro, P.T., Pais, P., Costa, C., Manna, S., Sá-Correia, I., Teixeira, M.C., "The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts", Nucleic Acids Research, 45: D597-D603, 2017. 

Pais, P., Pires, C., Costa, C., Okamoto, M., Chibana, H., Teixeira, M.C., “Membrane proteomics analysis of the Candida glabrata response to 5-flucytosine: unveiling the role and regulation of the drug efflux transporters CgFlr1 and CgFlr2”, Frontiers in Microbiology, 7:2045, 2016. 

Pais, P., Costa, C., Cavalheiro, M., Romão, D., Teixeira, M.C., "Transcriptional control of drug resistance, virulence and immune system evasion in pathogenic fungi: a cross-species comparison", Frontiers in Cellular and Infection Microbiology, 6:131, 2016. 

Costa, C., Ribeiro, J., Miranda, I.M., Silva-Dias, A.I., Cavalheiro, M., Costa-de-Oliveira, S., Rodrigues, A.G., Teixeira, M.C., "Clotrimazole drug resistance in Candida glabrata clinical isolates correlates with increased expression of the drug:H+ antiporters CgAqr1, CgTpo1_1, CgTpo3 and CgQdr2", Frontiers in Microbiology, 7:256, 2016. 

Pais, P., Costa, C., Pires, C., Shimizu, K., Chibana, H., Teixeira, M.C., “Membrane proteome-wide response to the antifungal drug clotrimazole in Candida glabrata: role of the transcription factor CgPdr1 and the Drug:H+ Antiporters CgTpo1_1 and CgTpo1_2”, Molecular and Cellular Proteomics, 15(1):57-72, 2016. 

Costa, C., Ponte, A., Pais, P., Santos, R., Cavalheiro, M., Takashi, Y., Chibana, H., Teixeira, M.C., "New mechanisms of flucytosine resistance in C. glabrata unveiled by a chemogenomics analysis in S. cerevisiae", PLoS ONE, 10(8):e0135110, 2015. 

Costa, C., Dias, P.J., Sá-Correia, I., Teixeira, M.C., "MFS multidrug transporters in pathogenic fungi: do they have real clinical impact?", Frontiers in Physiology, 5: 197, 2014. 

dos Santos, S.C., Teixeira, M.C., Dias, P.J., Sá-Correia, I., "MFS transporters required for multidrug/multixenobiotic (MD/MX) resistance in the model yeast: understanding their physiological function through post-genomic approaches", Frontiers in Physiology, 5: 180, 2014. 

Costa, C., Nunes, J., Henriques, A., Mira, N.P., Nakayama, H., Chibana, H., Teixeira, M.C., The Candida glabrata drug:H+ antiporter CgTpo3 (ORF CAGL0I10384g): role in azole drug resistance and polyamine homeostasis, Journal of Antimicrobial Chemotherapy, 69:1767-76, 2014. 

Teixeira, M.C., Monteiro, P.T., Guerreiro, J.F., Gonçalves, J.P., Mira, N.P., dos Santos, S.C., Cabrito, T., Palma, M., Costa, C., Francisco, A.P., Madeira, S.C., Oliveira, A.L., Freitas, A.T., Sá-Correia, I., "The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae", Nucleic Acids Research, 42: D161-D166, 2014. 

Mira, N.P., Teixeira, M.C., "Microbial mechanisms of tolerance to weak acid stress", Frontiers in Microbiology (Editorial), 4: 416, 2013. 

Costa, C., Henriques, A.S., Pires, C., Nunes, J., Ohno, M., Chibana, H., Sá-Correia, I., Teixeira, M.C., The dual role of Candida glabrata Drug:H+ Antiporter CgAqr1 (ORF CAGL0J09944g) in antifungal drug and acetic acid resistance, Frontiers in Microbiology, 4: 170, 2013. 

Costa, C., Pires, C., Cabrito, T.R., Renaudin, A., Ohno, M., Chibana, H., Sá-Correia, I., Teixeira, M.C., "Candida glabrata drug:H+ antiporter CgQdr2 (ORF CAGL0G08624g) confers imidazole drug resistance, being activated by the CgPdr1 transcription factor", Antimicrobial Agents and Chemotherapy, 57: 3159-3167, 2013. 

Teixeira, M.C., Godinho, C.P., Cabrito, T.R., Mira, N.P., Sá-Correia, I., Increased expression of the yeast multidrug resistance ABC transporter Pdr18 leads to increased ethanol tolerance and ethanol production in high gravity alcoholic fermentation, Microbial Cell Factories, 11: 98, 2012. 

Gonçalves, J.P., Francisco, A.P., Mira, N.P., Teixeira, M.C., Sá-Correia, I., Oliveira, A.L., Madeira, S.C., TFRank: Network-based prioritization of regulatory associations underlying transcriptional responses. Bioinformatics, 27(22):3149-57, 2011. 

Monteiro P.T., Dias J.P., Ropers D., Oliveira A.L., Sá-Correia I., Teixeira, M.C., Freitas A.T., "Qualitative modeling and formal verification of the FLR1 gene mancozeb response in Saccharomyces cerevisiae", IET Systems Biology, 5, 308-316, 2011. 

Teixeira, M.C., Mira N.P., Sá-Correia I., “A genome-wide perspective on the response and tolerance to food-relevant stresses in Saccharomyces cerevisiae”, Current Opinion in Biotechnology, 22:150-156, 2011. 

Teixeira, M.C., Cabrito T.R., Hanif Z.M., Vargas R.C., Tenreiro S., Sá-Correia I., Yeast response and tolerance to polyamine toxicity involving the drug:H+ antiporter Qdr3 and the transcription factors Yap1 and Gcn4, Microbiology, 157: 945 - 956, 2011. 

Abdulrehman D., Monteiro P.T., Teixeira, M.C., Mira N.P., Lourenço A.B., dos Santos S.C., Cabrito T.R., Francisco A.P., Madeira S.C., Aires R.S., Oliveira A.L., Sá-Correia I., Freitas A.T., "YEASTRACT: Providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface", Nucleic Acids Research, 39: D136-40, 2011. 

Teixeira, M.C.*, Dias P.J., Monteiro P.T., Sala A., Oliveira A.L., Freitas A.T., Sá-Correia I., "Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches", Molecular Biosystems, 6(12), 2471-2481, 2010. (*corresponding author) 

Sá-Correia I., Teixeira, M.C., "Two-dimensional Electrophoresis-based Expression Proteomics: a microbiologist’s perspective", Expert Reviews in Proteomics, 7(6), 943-953, 2010. 

Teixeira, M.C., Raposo L.R., Palma M., Sá-Correia I., "Identification of genes required for maximal tolerance to high-glucose concentrations, as those present in industrial alcoholic fermentation media, through a chemogenomics approach", OMICS: A Journal of Integrative Biology, 14(2), 201-210, 2010. 

Madeira S., Teixeira, M.C., Sá-Correia I., Oliveira A.L., “Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithm”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7: 153-165, 2010. 

Teixeira, M.C., Raposo L.R., Mira N.P., Lourenço A.B., and Sá-Correia I., "Genome-wide identification of genes required for maximal tolerance to ethanol in yeast: important role of FPS1" Applied and Environmental Microbiology, 75: 5761-5772, 2009. 

Teixeira, M.C., Dias P.J., Simões T., Sá-Correia I. “Yeast adaptation to mancozeb involves the up-regulation of FLR1 under the coordinate control of Yap1, Rpn4, Pdr3 and Yrr1” Biochemical Biophysical Research Communications, 367: 249-255, 2008. 

Monteiro P., Mendes N., Teixeira, M.C., d´Orey S., Tenreiro S., Mira N.P., Pais H., Francisco A., Carvalho A., Lourenço A.R., Sá-Correia I., Oliveira A.L., Freitas A.T. "YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae". Nucleic Acids Research. Database Issue, 36: D132-D136, 2008. 

Teixeira, M.C., Monteiro, P., Jain, P., Tenreiro, S., Fernandes, A.R., Mira, N.P., Alenquer, M., Freitas, A.T., Oliveira, A.L., Sá-Correia, I., “The YEASTRACT database: a tool for the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae”, Nucleic Acids Research, Database Issue, 34: D446-D451, 2006. 

Pais, P., Oliveira, J., Viana, R., Costa, I.V., Sá-Correia, I., Monteiro, P.T., Teixeira, M.C., “Prediction of gene and genomic regulation in Candida species, using the PathoYeastract database: a comparative genomics approach” In: Methods in Molecular Biology - Yeast Functional Genomics (Frederic Devaux, Ed), Springer, 2477:419-437, 2022.

Viana, R., Pais, P., Cavalheiro, M., Galocha, M., Teixeira, M.C., “Host-Induced Stress Response in Human Pathogenic Fungi”, In: Encyclopedia of Mycology (Zaragoza O. and Casadevall A., Ed.), Elsevier, vol. 1, pp. 182–196, 2021.

Pais, P., Galocha, M., Teixeira, M.C., “Genome-wide response to drugs and stress in the pathogenic yeast Candida glabrata”, In: Yeasts in Biotechnology and Human Health (Isabel Sá-Correia, Ed.), Springer, chapter 7, pp. 155-193, 2019.

Cavalheiro, M., Teixeira, M.C., “In the cross-road between drug resistance and virulence in fungal pathogens”, In: Stress Response Mechanisms in Fungi – Theoretical and practical aspects (Marek Skoneczny, Ed.), Springer, chapter 7, pp. 223-259, 2018. 

Cavalheiro, M., Costa, C., Pais, P., Teixeira, M.C., “Acquisition of resistance to azole antifungal drugs in Candida species: imidazoles versus triazoles”, In: Advances in Medicine and Biology (Leon V. Berhardt, Ed.), Nova Science Publishers, Inc., NY, USA, vol.8, chapter 9, 2016.

Teixeira, M.C., Monteiro, P.T., Sá-Correia, I., 2016, "Predicting gene and genomic regulation in Saccharomyces cerevisiae, using the YEASTRACT database: a step by step guided analysis", In: Methods in Molecular Biology - Yeast Functional Genomics (Frederic Devaux, Ed), Springer, vol 1361, 391-404, 2016.

Costa C., Pais P., Teixeira, M.C., "Multidrug resistance in pathogenic yeasts: emphasis on the role of ABC and MFS multidrug transporters", In: The Battle Against Microbial Pathogens: Basic Science, Technological Advances and Educational Programs (A. Méndez-Vilas, Ed.), Formatex, Badajoz, Spain, p. 947-954, 2015.

Teixeira, M.C., "Complex regulatory interplay between multidrug resistance and oxidative stress response in yeast: the FLR1 regulatory network as a systems biology case-study", In: Oxidative Stress - Molecular Mechanisms and Biological Effects (Lushchak V.I. & Semchyshyn H., Eds), INTECH, Vienna, Austria, 323-340, 2012.

Mira, N.P., Teixeira, M.C., Sá-Correia, I., "Characterization of complex regulatory networks and identification of promoter regulatory elements in yeast: in silico and wet-lab", In: Methods in Molecular Biology - Transcriptional Regulation: Methods and Protocols (Vancura A., Ed), Springer, vol. 809, 27-48, 2012.