期刊論文 Journal Articles

1. Huang, Y.-P.*, Wang, A., & Barile, D.* (2025). Accurate quantification of small bioactive peptides derived from dairy and plant-based beverages using isotope-coded dimethyl labeling and LC-MS/MS. Food Chemistry, 495, 146484. (5-yr IF: 9.7, 10/140 (7.1%) in Food Science & Technology)

2. Kim, Y.-T., Huang, Y.-P., Ozturk, G., Hahn, J., Taha, A., Wang, A., Barile, D., & Mills, D. (2025). Characterization of Bifidobacterium bifidum growth and metabolism on whey protein phospholipid concentrate. Journal of Dairy Scienc, 108(4), 3366–3381. (5-yr IF: 4.4, 6/62 (9.7%) in Agriculture, Dairy & Animal Science)

3. Huang, Y.-P.*, Masarweh, C., Paviani, B., Mills, D. A., & Barile, D.* (2024). Exploring bioactive compounds in chickpea and bean aquafaba: Insights from glycomics and peptidomics analyses. Food Chemistry, 460, 140635. (5-yr IF: 9.7, 10/140 (7.1%) in Food Science & Technology)

4. Astono, J.#, Huang, Y.-P.#, Sundekilde, U. K., & Barile, D. (2024). Human milk oligosaccharide profiles remain unaffected by maternal pre-pregnancy body mass index in an observational study. Frontiers in Nutrition, 11, 1455251. (5-yr IF: 5.4, 21/86 (24.4%) in Nutrition & Dietetics)

5. Wang, Y., Huang, Y.-P., Rogers, M., Leskinen, H., Soppela, P., Tuomivaara, A., Hyvonen, J., & Barile, D. (2024). A Comparative Analysis of Milk Oligosaccharides via LC-MS: Globally Distributed Cattle Breeds and Native Northern Finncattle. Biology, 13(11), 855. (5-yr IF: 4.0, 22/88 (25.0%) in Biology)

6. Barnum, C. R., Paviani, B., Couture, G., Masarweh, C., Chen, Y., Huang, Y.-P., Markel, K., Mills, D. A., Lebrilla, C. B., Barile, D., Yang, M., & Shih, P. M. (2024). Engineered plants provide a photosynthetic platform for the production of diverse human milk oligosaccharides. Nature Food, 5, 480–490. (5-yr IF: 28.3, 1/140 (0.7%) in Food Science & Technology)

7. Zhang, Z., Siddiqi, H., Huang, Y.-P., McClorry, S., Ji, P., Barile, D., & Slupsky, C. M. (2024). An LC-MS/MS Method for the Simultaneous Quantification of Insulin, Cortisol, Glucagon-like Peptide 1, Ghrelin, and Osteocalcin. Separations, 11(2), 41. (5-yr IF: 2.7, 47/85 (55.3%) in Chemistry, Analytical)

8. Durham, S. D., Huang, Y.-P., Wang, A., Ormond, L., & Barile, D. (2023). Delactosed permeate as a source for extracting oligosaccharides and peptides: compositional variation and processing strategies. International Dairy Journal, 105692. (5-yr IF: 3.6, 61/140 (43.6%) in Food Science & Technology)

9. Portmann, R., Jimenez-Barrios, P., Jardin, J., Abbuhl, L., Barile, D., Danielsen, M., Huang, Y.-P., Dalsgaard, T. K., Miralles, B., Briard-Bion, V., Cattaneo, S., Chambon, C., Cudennec, B., De Noni, I., Deracinois, B., Dupont, D., Duval, A., Flahaut, C., Lopez-Nicolas, R., El, S. N., Pica, V., Sante-Lhoutellier, V., Stuknytė, M., Theron, L., Sayd, T., Recio, I., Egger, L. (2023). A multicentre peptidomics investigation of food digesta: current state of the art in mass spectrometry analysis and data visualisation. Food Research International, 169, 112887. (5-yr IF: 8.5, 12/140 (8.6%) in Food Science & Technology)

10. Huang, Y.-P., Paviani, B., Fukagawa, N. K., Phillips, K., & Barile, D. (2023). Comprehensive oligosaccharide profiling of commercial almond milk, soy milk, and soy flour. Food Chemistry, 409, 135267. (5-yr IF: 9.7, 10/140 (7.1%) in Food Science & Technology)

11. Dias, F. F. G.#, Huang, Y.-P.#, Schauer, J., Barile, D., Van de Water, J., & de Moura Bell, J. M. L. N. (2023). Effects of protease-assisted aqueous extraction on almond protein profile, digestibility, and antigenicity. Current Research in Food Science, 6, 100488. (5-yr IF: 7.7, 16/140 (11.4%) in Food Science & Technology)

12. Machida, K., Huang, Y.-P., Dias, F. F. G, Barile, D., & de Moura Bell, J. M. L. N. (2022). Leveraging Bioprocessing Strategies to Achieve the Simultaneous Extraction of Full-Fat Chickpea Flour Macronutrients and Enhance Protein and Carbohydrate Functionality. Food and Bioprocess Technology, 15, 1760–1777. (5-yr IF: 6.1, 29/140 (20.7%) in Food Science & Technology)

13. Ozturk, G., Liang, N., Bhattacharya, M., Robinson, R. C., Shankar, S., Huang, Y.-P., Paviani, B., Taha, A. Y., & Barile, D. (2022). Glycoproteomic and Lipidomic Characterization of Industrially Produced Whey Protein Phospholipid Concentrate with Emphasis on Antimicrobial Xanthine Oxidase, Oxylipins and Small Milk Fat Globules. Dairy, 3(2), 277–302.

14. Huang, Y.-P., Robinson, R. C., & Barile, D. (2022). Food glycomics: Dealing with unexpected degradation of oligosaccharides during sample preparation and analysis. Journal of Food and Drug Analysis, 30(1), 62–76. (5-yr IF: 5.1, 37/140 (26.4%) in Food Science & Technology)

15. Huang, Y.-P., Dias, F. F. G., de Moura Bell, J. M. L. N., & Barile, D. (2022). A complete workflow for discovering small bioactive peptides in foods by LCMS/MS: A case study on almonds. Food Chemistry, 369, 130834. (5-yr IF: 9.7, 10/140 (7.1%) in Food Science & Technology)

16. Huang, Y.-P., Robinson, R. C., Dias, F. F. G., de Moura Bell, J. M. L. N., & Barile, D. (2022). Solid-Phase Extraction Approaches for Improving Oligosaccharide and Small Peptide Identification with Liquid Chromatography-High-Resolution Mass Spectrometry: A Case Study on Proteolyzed Almond Extract. Foods, 11(3), 340. (5-yr IF: 5.6, 32/140 (22.9%) in Food Science & Technology)

17. Bunyatratchata, A., Huang, Y.-P., Ozturk, G., Cohen, J. L., Bhattacharya, M., de Moura Bell, J. M. L. N., & Barile, D. (2020). Effects of Industrial Thermal Treatments on the Release of Bovine Colostrum Glycoprotein N-Glycans by Endo-β-N-acetylglucosaminidase. Journal of Agricultural and Food Chemistry, 68(51), 15208–15215. (5-yr IF: 6.4, 6/60 (10.0%) in Agriculture, Multidisciplinary)

18. Huang, Y.-P., & Lai, H.-M. (2016). Bioactive compounds and antioxidative activity of colored rice bran. Journal of Food and Drug Analysis, 24(3), 564–574. (5-yr IF: 5.1, 37/140 (26.4%) in Food Science & Technology)

專書論文 Book Chapters

1. Huang, Y.-P., Wang, A., & Barile, D (2024). Exploring Milk Components by Glycoproteomics and Peptidomics. In Proteomics Applied to Foods (pp. 51–72). New York, NY: Springer US.  

2. Lai, H.-M. & Huang, Y.-P. (2014). Effects of ball milling on the properties of colored rice bran. In Gums and stabilisers for the food industry 17 (pp. 155–163). Williams, P., Phillips, G., Eds.; Royal Society of Chemistry: Cambridge. ISBN 978-1-84973-883-5. 

研討會發表 Conference Presentation

1. Huang, Y.-P., Wang, Y., Kim, Y., Ozturk, G., Wang, A., Fukagawa, N. K., Phillips, K. M., Mills, D. A., & Barile, D. Unveiling protein digestion and prebiotic potential of bovine milk and plant-based alternatives via LC-MS/MS-based peptidomics and glycomics (oral presentation). American Society for Mass Spectrometry Annual Meeting. Anaheim, CA, USA, June 2–6, 2024. 

2. Huang, Y.-P.; Dias, F. F. G.; de Moura Bell, J. M. L. N.; Barile, D. Applications of LC-MS to analyze food-derived bioactive peptides: from food processing to simulated gastrointestinal digestion (poster). American Society for Mass Spectrometry Annual Meeting. Houston, TX, USA. June 4–8, 2023. 

3. Huang, Y.-P.; Barile, D. Characterization of small bioactive peptides in food processing streams using dimethyl labeling and quadrupole-time-of-flight mass spectrometry (oral presentation). American Society for Mass Spectrometry Annual Meeting. Philadelphia, PA, USA. October 30–November 4, 2021. 

4. Huang, Y.-P.; Barile, D. Don’t throw away the cooking water: Aquafaba from chickpeas (Cicer arietinum) and common beans (Phaseolus vulgaris) contain potentially bioactive peptides and oligosaccharides (oral presentation and poster). FIRST (IFT Annual Meeting), virtual meeting. July 19–21, 2021. (Awarded 2nd Place for the Graduate Student Oral Competition, Food Chemistry Division). 

5. Huang, Y.-P.; Dias, F. F. G.; de Moura Bell, J. M. L. N.; Barile, D. Comparison of solid-phase extraction strategies for purification of bioactive peptides and oligosaccharides in foods for LC-MS analysis (poster). AOAC International Annual Meeting. Denver, CO, USA. September 8–11, 2019. 

6. Huang, Y.-P.; Lai, H.-M. Improving the stability and functionality of black rice bran by microwave heating and ball-milling treatments (poster). International Conference of Food Factors (ICoFF), Taipei, Taiwan. November 20–23, 2011. 

7. Huang, Y.-P.; Lai, H.-M. Bioactive compounds of bran in colored rice (poster). American Association of Cereal Chemists International (AACCI) Annual Meeting. Savannah, GA, USA. October 24–27, 2010.