原著論文
2020–Present
Takashi Naoi, Maria S Kaponi, Rino Hashimoto, Shoya Kitabayashi, Akiko Kashiwagi, Teruo Sano
DNA aptamers selected against potato spindle tuber viroid bind the viroid and differentially modulate infection.
Plant cell reports 45(9) 2026年9月5日
Takashi Ikegami, Hiroki Kojima, Akiko Kashiwagi
Community First Theory: How Collective Organization Generates Individual Diversity.
Entropy (Basel, Switzerland) 28(5) 2026年5月5日
Ao Takeuchi, Nana Sato, Miwa Yamada, Akiko Kashiwagi, Megumi Nishimukai
Intestinal Absorption and Remodeling of Odd-Numbered Plasmalogens Derived from Selenomonas ruminantium in Rats.
Journal of oleo science 75(5) 589-606 2026年5月
Boying Xu, Yueyue Zhang, Yunfei Liu, Christian Hoischen, Martin Westermann, Akiko Kashiwagi, Tatsuya Kato, Tetsuya Yomo, Jian Xu
Revealing Cell Envelope Heterogeneity in Two Stable Escherichia coli L-Forms.
International journal of molecular sciences 27(7) 2026年3月30日
Maria S Kaponi, Teruo Sano, Takashi Naoi, Akiko Kashiwagi
High-Throughput Sequencing and SELEX-Based Protocol for Selecting Aptamers Against Potato Spindle Tuber Viroid.
International journal of molecular sciences 27(4) 2026年2月14日
Shamoli Akter, Megumi Nishimukai, Miwa Yamada, Akiko Kashiwagi
Enzymatic synthesis of inositol plasmalogens from distinct lipid sources using phospholipase D from Streptomyces antibioticus.
Biotechnology letters 47(5) 98-98 2025年9月8日
Hiroki Kojima, Akiko Kashiwagi, Takashi Ikegami
Revealing gene expression heterogeneity in a clonal population of Tetrahymena thermophila through single-cell RNA sequencing.
Biochemistry and biophysics reports 38 101720-101720 2024年7月
Yunfei Liu, Chen Kang, Yueyue Zhang, Di Tian, Hui Lu, Boying Xu, Yang Xia, Akiko Kashiwagi, Martin Westermann, Christian Hoischen, Jian Xu, Tetsuya Yomo
Comparative genomics hints at dispensability of multiple essential genes in two Escherichia coli L-form strains.
Bioscience reports 43(10) 2023年10月31日
Riko Yamaguchi, Shamoli Akter, Aki Kanehama, Takahiro Iwamoto, Meme Hasegawa, Akeno Ito, Megumi Nishimukai, Miwa Yamada, Akiko Kashiwagi
Improvement of solubility of phospholipase D from Streptomyces antibioticus in recombinant Escherichia coli and its application for the enzymatic synthesis of a non-natural plasmalogen.
Letters in applied microbiology 76(4) 2023年4月3日
Akiko Kashiwagi, Tetsuya Yomo
Construction of a mini-RNA replicon in Escherichia coli.
Synthetic biology (Oxford, England) 8(1) ysad004 2023年
Teruo Sano, Akiko Kashiwagi
Host selection-producing variations in the genome of hop stunt viroid.
Virus research 311 198706-198706 2022年4月2日
Nana Sato, Aki Kanehama, Akiko Kashiwagi, Miwa Yamada, Megumi Nishimukai
Lymphatic Absorption of Microbial Plasmalogens in Rats.
Frontiers in cell and developmental biology 10 836186-836186 2022年
Ying-Hong He, Charith Raj Adkar-Purushothama, Tsutae Ito, Asuka Shirakawa, Hideki Yamamoto, Akiko Kashiwagi, Ayumu Tatewaki, Misato Fujibayashi, Shuichi Sugiyama, Katsuhiko Yaginuma, Tomoya Akahira, Shingen Yamamoto, Seiya Tsushima, Yuko Matsushita and Teruo Sano
Microbial Diversity in the Phyllosphere and Rhizosphere of an Apple Orchard Managed under Prolonged "Natural Farming" Practices.
Microorganisms 9(10) 2021年9月29日
Md Tanvir Hossain, Toma Yokono, Akiko Kashiwagi
The Single-Stranded RNA Bacteriophage Qβ Adapts Rapidly to High Temperatures: An Evolution Experiment.
Viruses 12(6) 2020年6月12日
Chikage Tanaka, Takahiro Nakayama, Takahiro Toba, Akiko Kashiwagi
Complete genomic sequence of Pseudomonas lactis bacteriophage HU1 isolated from raw cow's milk.
Archives of virology 165(1) 215-217 2020年1月
Before 2019
Akiko Kashiwagi, Tamami Kadoya, Naoya Kumasaka, Tomofumi Kumagai, Fumie Sano Tsushima, Tetsuya Yomo
Influence of adaptive mutations, from thermal adaptation experiments, on the infection cycle of RNA bacteriophage Qβ.
Archives of virology 163 ( 10 ) 2655 - 2662 2018年10月
Tanaka C, Yamada K, Takeuchi H, Inokuchi Y, Kashiwagi A, Toba T
A Lytic Bacteriophage for Controlling Pseudomonas lactis in Raw Cow's Milk.
Applied and environmental microbiology 84 ( 18 ) 2018年09月
Akiko Kashiwagi, Hikari Kitamura, Fumie Sano Tsushima
Characterization of a single mutation in TraQ in a strain of Escherichia coli partially resistant to Qβ infection
Frontiers in Microbiology 6 124 2015年02月
Kashiwagi A, Sugawara R, Sano Tsushima F, Kumagai T, Yomo T
Contribution of silent mutations to thermal adaptation of RNA bacteriophage Qβ.
Journal of virology 88 ( 19 ) 11459 - 68 2014年10月
Hosoda K, Habuchi M, Suzuki S, Miyazaki M, Takikawa G, Sakurai T, Kashiwagi A, Sueyoshi M, Matsumoto Y, Kiuchi A, Mori K, Yomo T.
Adaptation of a cyanobacterium to a biochemically rich environment in experimental evolution as an initial step toward a chloroplast-like state
PLoS ONE 9 ( 5 ) e98337 2014年05月
Tomonori Inomata, Hitomi Kimura, Haruki Hayasaka, Akinori Shiozaki, Yasuhiro Fujita, Akiko Kashiwagi
Quantitative comparison of the RNA bacteriophage Qβ life cycle in rich and minimal media
Archives of Virology 2012年07月
Akiko Kashiwagi, Tetsuya Yomo
Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli
PLoS Genetics 7 ( 8 ) 2011年08月
Saburo Tsuru, Nao Yasuda, Yoshie Murakami, Junya Ushioda, Kotaro Mori, Akiko Kashiwagi, Shingo Suzuki, Bei-Wen Ying, Tetsuya Yomo
Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli
Molecular Systems Biology 7 2011年03月
Kazufumi Hosoda, Shingo Suzuki, Yoshinori Yamauchi, Yasunori Shiroguchi, Akiko Kashiwagi, Naoaki Ono, Kotaro Mori, Tetsuya Yomo
Cooperative adaptation to establishment of a synthetic bacterial mutualism
PLoS ONE 6 ( 2 ) 2011年02月
Toshihiko Kishimoto, Leo Iijima, Makoto Tatsumi, Naoaki Ono, Ayana Oyake, Tomomi Hashimoto, Moe Matsuo, Masato Okubo, Shingo Suzuki, Kotaro Mori, Akiko Kashiwagi, Chikara Furusawa, Bei-Wen Ying, Tetsuya Yomo
Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution
PLoS Genetics 6 ( 10 ) 2010年10月
Tsuru S, Ichinose J, Kashiwagi A, Ying BW, Kaneko K, Yomo T
Noisy cell growth rate leads to fluctuating protein concentration in bacteria.
Physical biology 6 ( 3 ) 036015 2009年06月
Kotaro Mori, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo
Evolution of carrying capacity in evolution experiments focusing on a single locus on the Escherichia coli chromosome
BioSystems 95 ( 2 ) 114 - 119 2009年02月
Kashiwagi A, Sakurai T, Tsuru S, Ying BW, Mori K, Yomo T
Construction of Escherichia coli gene expression level perturbation collection.
Metabolic engineering 11 ( 1 ) 56 - 63 2009年01月
Ono N, Suzuki S, Furusawa C, Agata T, Kashiwagi A, Shimizu H, Yomo T
An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays.
Bioinformatics (Oxford, England) 24 ( 10 ) 1278 - 85 2008年05月
Yamada A, Matsuyama S, Todoriki M, Kashiwagi A, Urabe I, Yomo T
Phenotypic plasticity of Escherichia coli at initial stage of symbiosis with Dictyostelium discoideum.
BioSystems 92 ( 1 ) 1 - 9 2008年04月
Naoki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu and Tetsuya Yomo
An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays
Bioinformatics 24 ( 10 ) 1278 - 1285 2008年03月
Yamada T, Furusawa C, Nagahisa K, Kashiwagi A, Yomo T, Shimizu H
Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture.
BioSystems 90 ( 3 ) 614 - 22 2007年11月
Shingo Suzuki, Naoki Ono, Chikara Furusawa, Akiko Kashiwagi and Tetsuya Yomo
Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays
BMC Genomics 8 373 2007年10月
Shingo Suzuki, Chikara Furusawa, Naoki Ono, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo
Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide
BIOPHYSICS 3 47 - 56 2007年09月
Tadashi Yamada, Chikara Furusawa, Keisuke Nagahisa, Akiko Kashiwagi, Tetsuya Yomo, and Hiroshi Shimizu
Analysis of Fluctuation in Protein Abundance without Promoter Regulation based on Escherichia coli Continuous Culture
BioSystems 90 ( 3 ) 614 - 622 2007年02月
Akiko Kashiwagi, Itaru Urabe, Kunihiko Kaneko and Tetsuya Yomo
Adaptive Response of a Gene Network to Environmental Changes by Fitness-induced Attractor Selection
Plos ONE 1 ( 1 ) e49 - e49 2006年12月
Takao Suzuki, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo
Inherent Characteristics of Gene Expression for Buffering Environmental Changes
BIOPHYSICS 2 63 - 70 2006年11月
Suzuki T, Kashiwagi A, Urabe I, Yomo T
Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations.
Biophysics (Nagoya-shi, Japan) 2 63 - 70 2006年
Chikara Furusawa, Takao Suzuki, Akiko Kashiwagi, Tetsuya Yomo and Kunihiko Kaneko
Ubiquity of log-normal distributions in intra-cellular reaction dynamics
BIOPHYSICS 1 25 - 31 2005年04月
Suzuki T, Kashiwagi A, Mori K, Urabe I, Yomo T
History dependent effects on phenotypic expression of a newly emerged gene.
BioSystems 77 ( 1-3 ) 137 - 41 2004年11月
Akiko Kashiwagi, Wataru Noumachi, Masato Katsuno, Mohammad. T. Alam, Itaru Urabe and Tetsuya Yomo
Plasticity of fitness and diversification process during an experimental molecular evolution
Journal of Molecular Evolution 52 ( 6 ) 502 - 509 2001年06月
Akiko Kashiwagi, Tadashi Kanaya, Tetsuya Yomo, and Itaru Urabe
How small can the difference among competitors be for coexistence to Occur
Researches on Population Ecology 40 ( 2 ) 223 - 226 1998年06月
Xu Wei.-Zhong., Akiko Kashiwagi, Tetsuya Yomo, and Itaru Urabe
Fate of a mutant emerging at the initial stage of evolution
Researches on Population Ecology 38 ( 2 ) 231 - 237 1996年06月