Publications
Publications
Huang, Y.-J., Kurniansyah, N., Levey, D. F., Gelernter, J., Huffman, J. E., Cho, K., Wilson, P. W., Gottlieb, D. J., Rice, K. M. & Sofer, T. (2025), ‘A semi-empirical Bayes approach for calibrating weak instrumental bias in sex-specific mendelian randomization studies’, The American Journal of Human Genetics 112, 2213–2231.
Gao, C., Tubbs, J. D., Huang, Y.-J., Han, Y., Guo, M., Li, S., Ma, E., Luo, D., Smoller, J. W., Lee, P. H. & Duan, R. (2025), ‘Unsupervised ensemble learning for efficient integration of pre-trained polygenic risk scores’, medRxiv.
Huang, Y.-J., Kurniansyah, N., Goodman, M. O., Spitzer, B. W., Wang, J., Stilp, A., Laurie, C., de Vries, P. S., Chen, H., Min, Y.-I. et al. (2024), ‘The expected polygenic risk score (ePRS) framework: an equitable metric for quantifying polygenetic risk via modeling of ancestral makeup’, medRxiv.
Huang, Y.-J.*, Lee, Y.-Y.*, Chang, H.-L., Wang, C., Hong, J.-S. & Hsiao, C. K. (2024), ‘Bayesian typhoon precipitation prediction with a mixture of ensemble forecast-based and historical event-based prediction functions’, Journal of Hydrology 635, 131176.
Huang, Y.-J., Lai, Y.-J. & Hsiao, C. K. (2023), ‘A Bayesian approach to differential edges with probabilistic interactions: applications in association and classification’, Bioinformatics Advances 3(1), vbad172.
Huang, Y.-J., Mukherjee, R. & Hsiao, C. K. (2022), ‘Probabilistic edge inference of gene networks with Markov random field-based Bayesian learning’, Frontiers in Genetics 13, 1034946.
Ho, C.-H.*, Huang, Y.-J.*, Lai, Y.-J., Mukherjee, R. & Hsiao, C. K. (2022), ‘The misuse of distributional assumptions in functional class scoring gene-set and pathway analysis’, G3 12(1), jkab365.
Chang, S.-M., Yang, M., Lu, W., Huang, Y.-J., Huang, Y., Hung, H., Miecznikowski, J. C., Lu, T.-P. & Tzeng, J.-Y. (2021), ‘Gene-set integrative analysis of multi-omics data using tensor-based association test’, Bioinformatics 37(16), 2259–2265.
Huang, Y.-J., Lu, T.-P. & Hsiao, C. K. (2020), ‘Application of graphical lasso in estimating network structure in gene set’, Annals of Translational Medicine 8(23), 1556.
Juang, J.-M. J., Huang, Y.-J., Chang, I.-S., Chen, C.-Y. J., Wu, I.-C., Hsu, C.-C., Chen, T.-Y., Tseng, W.-T., Yeh, S.-F. S. & Hsiung, C. A. (2020), ‘Role of electrocardiographic early repolarization pattern in long-term outcomes of a community-based middle-aged and geriatric ambulatory population: a prospective cohort study’, Aging (Albany NY) 12(24), 26140.
*: contributed equally