Research Articles
Singh A., Thutupalli S. Kumar M.*, Ameta S.* (2024) Constrained dynamics of oligonucleotides in phase-separated droplets. Biophys. J., 123, 1-9.
Ameta S.*, Kumar M., Chakraborty N., Matsubara Y., Gandavadi D., Prashanth S., Thutupalli S.* (2023) Multispecies autocatalytic RNA reaction networks in coacervates. Commun. Chem. (Nature), 6, 91.
Matsubara Y., Ameta S., Thutupalli S., Nghe P., Krishna S. (2022) Robustness of compositional heredity to the dynamics of prebiotic compartments (arXiv DOI: 10.48550/arXiv.2211.03155).
Jeancolas C., Matsubara Y.J., Vybornyi M., Lambert C.N., Blokhuis A., Alline T., Griffiths A.D., Ameta S., Sandeep Krishna, Philippe Nghe. (2021) RNA diversification by a self-reproducing ribozyme revealed by deep sequencing and kinetic modelling. Chem. Commun., 57, 7517-7520.
Ameta S.ǂ, Arsène S.ǂ, Foulon S., Saudemont B., Clifton B.E., Griffiths A.D., Nghe P. (2021) Darwinian properties and their trade-offs in autocatalytic RNA networks. Nat. Commun., 12, 1-11.
Arsène S.ǂ, Ameta S.ǂ, Lehman N., Griffiths A.D., Nghe, P. (2018) Coupled catabolism and anabolism in autocatalytic RNA sets. Nucleic Acid Res., 46, 9660–9666.
Ameta S.ǂ, Becker J.ǂ and Jäschke A. (2014) RNA–peptide conjugate synthesis by inverse-electron demand Diels–Alder reaction, Org. Biomol. Chem., 12, 4701–4707.
Ameta S.ǂ, Winz M.-L.ǂ, Previti C. and Jäschke A. (2014) Next-generation sequencing reveals how RNA catalysts evolve from random space. Nucleic Acid Res., 42, 1303-1310.
Note: This article was highlighted in F100OPrime; http://f1000.com/prime/718154868.
Ameta S. and Jäschke A. (2013) An RNA catalyst that reacts with a mechanistic inhibitor of serine proteases. Chem. Sci., 4, 957-964.
Schoch J.ǂ, Ameta S.ǂ and Jäschke A. (2011) Inverse electron-demand Diels-Alder reactions for the selective and efficient labelling of RNA. Chem. Comm., 47, 12536-12537.
Note: This article was highlighted in F100OPrime; http://f1000.com/prime/13370987.
Reviews
Ameta S.*, Mastubara Y., Chakraborty N., Krishna S., Thutupalli S (2021) Self-Reproduction and Darwinian Evolution in Autocatalytic Chemical Reaction Systems. Life (Basel), 11, 308.
Deyell M., Ameta S., Nghe P. (2019) Large scale control and programming of gene expression CRISPR. Semin. Cell Dev. Biol., 96, 124-132.
Book chapters
Ameta S., Blokhuis A., Jeancolas C., Nghe P. (2022) Toward evolution in chemical reaction networks. Page no: 379-423, Book: Prebiotic Chemistry and Life’s Origin, Royal Society of Chemistry (ISBN 978-1-78801-749-7, DOI: 10.1039/9781839164798-00379).
Ameta S.* and Menafra R. (2019). RNA Sequencing Technology for Biomedical Sciences” Book: Cutting Edge Techniques in Biophysics, Biochemistry and Cell Biology: From Principle to Applications. Bentham Science Publisher, ISBN: 978-981-14-2285-0, DOI:10.2174/97898114228671190101.