Ergun Alperay Tarim, PhD - Publications and Patents

Journal Articles

Research Articles

1. Ansah F., Hajialyani M., Ahmadi F., Gu Y., Tarim E. A., Mauk M. G., Awandare G., & Bau H. H. (2024). Self-actuated microfluidic chiplet for two-stage multiplex nucleic acid amplification assay. Lab-on-a-Chip. doi: 10.1039/D4LC00752B

2. Tarim, E. A., & Tekin, H. C. (2024). Colorimetric detection of serum creatinine on a miniaturized platform using hue-saturation-value space analysis. Scientific Reports, 14(1), 19441. doi: 10.1038/s41598-024-69719-3

3. Tarim, E. A., Erimez, B., Degirmenci, M., & Tekin, H. C. (2023). A Wearable Device Integrated with Deep Learning-Based Algorithms for the Analysis of Breath Patterns. Advanced Intelligent Systems. doi: 10.1002/aisy.202300174

4. Tarim, E. A., Oksuz, C., Karakuzu, B., Appak, O., Sayiner, A. A., & Tekin, H. C. (2023). Electromechanical RT-LAMP device for portable SARS-CoV-2 detection. Talanta, 254, 124190. doi: 10.1016/j.talanta.2022.124190

5. Karakuzu, B., Tarim, E. A., Oksuz, C., & Tekin, H. C. (2022). An electromechanical lab-on-a-chip platform for colorimetric detection of serum creatinine. ACS Omega, 7(29), 25837-25843. doi: 10.1021/acsomega.2c03354

6. Tarim, E. A., & Tekin, H. C. (2019). Performance evaluation of WebRTC-based online consultation platform. Turkish Journal of Electrical Engineering and Computer Sciences, 27(6), 4314-4327. doi: 10.3906/elk-1903-44

7. Tarim, E. A., Kandemir, E. K., & Mevsim, V. (2019). The Ordering of Smokers’toothpaste Choice Criteria with Fuzzy Model. Atatürk Üniversitesi Diş Hekimliği Fakültesi Dergisi, 29(3), 394-399. doi: 10.17567/ataunidfd.559817

Review Articles

1. Tarim, E.A., Mauk, M.G., & El-Tholoth, M. (2026). Emerging Microfluidic Plasma Separation Technologies for Point-of-Care Diagnostics: Moving Beyond Conventional Centrifugation. Biosensors, 16(1), 14. doi: 10.3390/bios16010014

2. Karakuzu, B., Anil İnevi, M., Tarim, E. A., Sarigil, O., Guzelgulgen, M., Kecili, S., ... & Tekin, H. C. (2024). Magnetic levitation-based miniaturized technologies for advanced diagnostics. Emergent Materials, 1-26. doi: 10.1007/s42247-024-00762-6

3. Ebrahimi A., Icoz K., Didarian R., Shih C.H., Tarim E. A., Nasseri B., Akpek A., Cecen B., Bal-Ozturk A., Güleç K., Li Y.E., Shih S., Tarım B.S., Tekin H.C, Alarçin E., Tayyebi-Azar M., Ghorbanpoor H., Özel C., Sarıboyacı A.E., Guzel F.D., Bassous N., Shin S.R., Avci H. (2024). Molecular separation by using active and passive microfluidic chip designs: A comprehensive review. Advanced Materials Interfaces. 12(2), 2300492. doi: 10.1002/admi.202300492

4. Tarim, E. A., Anil Inevi, M., Ozkan, I., Kecili, S., Bilgi, E., Baslar, M. S., ... & Tekin, H. C. (2023). Microfluidic-based technologies for diagnosis, prevention, and treatment of COVID-19: recent advances and future directions. Biomedical Microdevices, 25(2), 10. doi: 10.1002/admi.202300492

5. Tarim, E. A., Karakuzu, B., Oksuz, C., Sarigil, O., Kizilkaya, M., Al-Ruweidi, M. K. A., ... & Tekin, H. C. (2021). Microfluidic-based virus detection methods for respiratory diseases. Emergent Materials, 4, 143-168. doi: 10.1007/s42247-021-00169-7

Book Chapters

1. Ebrahimi A., Ghorbanpoor H., Dabagh S., Haris S. A., Tarim E. A., Öztürk A. B., Avci H. (2026). Bioprinting on Organ-on-Chip Technology. The Science and Applications of 3D Bioprinting, Taylor & Francis CRC Press, doi: 10.1201/9781032638164

2. Oksuz C., Tarim E. A., Ozcan HA., Koc S., Tekin H. C. (2025). Sample preparation using microfluidic technologies for non-invasive tests. Comprehensive Sampling and Sample Preparation (Second Edition), Academic Press, doi: 10.1016/B978-0-443-15978-7.00038-2

3. Keles S., Erimez B., Tarim E. A., & Tekin H. C. (2024). The Role of Artificial Intelligence in Healthcare. Birinci Basamak Sağlık Hizmetlerinde e-Sağlık Uygulamaları ve Geleceği. Vol. 1. Türkiye Klinikleri (pp.31-35).

4. Erimez B., Keles S., Tarim E. A., & Tekin H. C. (2024). Applications of Teleconsultation in Healthcare. Birinci Basamak Sağlık Hizmetlerinde e-Sağlık Uygulamaları ve Geleceği. Vol. 1. Türkiye Klinikleri (pp. 25-30).

5. Oksuz, C., Tarim, E. A., Ozcan, H. A., Koc, S., & Tekin, H. C. (2024). Sample preparation using microfluidic technologies for non-invasive tests. doi: 10.1016/B978-0-443-15978-7.00038-2

6. Tarim, E. A., Karakuzu, B., Oksuz, C., & Tekin, H. C. (2022). Telemedicine applications for pandemic diseases, with a focus on COVID-19. In Data Science for COVID-19 (pp. 191-208). Academic Press. doi: 10.1016/B978-0-323-90769-9.00028-1

Conference Papers

1. Keles S., Tarim E. A., Ozcan H. A., & Tekin, H. C. (2024). Rapid Prototyping of Microfluidic Channels Using 3D-Printer for Density Based Analysis of Microparticles in a Magnetic Levitation Platform. In MicroTAS 2024-28th International Conference on Miniaturized Systems for Chemistry and Life Sciences.

2. Tarim, E. A., Doyran O., Efe E., Yalcin-Ozuysal O., & Tekin, H. C. (2023). A Label-Free Strategy to Classify Microembolus and White Blood Cells in Microreservoirs Using Lensless Imaging Powered with Deep Learning-Based Algorithms. In MicroTAS 2023-27th International Conference on Miniaturized Systems for Chemistry and Life Sciences.

3. Karakuzu, B., Tarım, E. A. & Tekin, H. C. (2022). Serum Creatinine Detection in a Microfluidic Chip Using a Smartphone Camera. In MicroTAS 2022-26th International Conference on Miniaturized Systems for Chemistry and Life Sciences.

4. Tarim, E. A., Oksuz, C., Karakuzu, B., & Tekin, H. C. (2021, November). Colorimetric Detection of Creatinine on an Electromechanical Mixing Platform. In 2021 Medical Technologies Congress (TIPTEKNO) (pp. 1-4). IEEE. doi: 10.1109/TIPTEKNO53239.2021.9632857

5. Karakuzu, B., Tarim, E. A., Öksüz, C., & Tekin, H. C. (2020). Electromechanical lab-on-a-chip platform for creatinine analysis using automated ELISA protocols. In MicroTAS 2020-24th International Conference on Miniaturized Systems for Chemistry and Life Sciences.

6. Tarim, E. A.*, Cinel, G. & Tekin, H. C. (2020, November). Wearable respiratory rate sensor technology for diagnosis of sleep apnea. In 2020 Medical Technologies Congress (TIPTEKNO) (pp. 1-4). IEEE. doi: 10.1109/TIPTEKNO50054.2020.9299255

7. Tarim, E. A., Karakuzu, B., Ozcivici, E., & Tekin, H. C. (2019, October). Active mixing strategy with electromechanical platform for lab-on-a-chip applications. In 2019 Innovations in Intelligent Systems and Applications Conference (ASYU) (pp. 1-4). IEEE. doi: 10.1109/ASYU48272.2019.8946328

8. Tarim, E. A., Mevsim, V., & Kandemir, E. K. (2018). The ordering of smokers' criteria in choosing toothpaste with fuzzy dematel model. Tobacco Induced Diseases, 16(3). doi: 10.18332/tid/94773

9. Tarim, E. A., & Kandemir, E. K. (2017, October). Visual program application for supplier selection using fuzzy DEMATEL and fuzzy AHP. In 2017 International Conference on Computer Science and Engineering (UBMK) (pp. 1055-1060). IEEE. doi: 10.1109/UBMK.2017.8093457

Patents

1. (2026) EP4731070 - Method and Device for Detection of Sleep Apnea (link)

2. (2026) WO2026084674 - A Device for Real-Time Detection and Isolation of Circulating Tumor Microemboli (CTMs), and an Operating Method of Said Device (link)

3. (2024) WO2024263131 - Method and Device for Detection of Sleep Apnea (PCT/TR2024/050649) (link)

4. (2024) WO2024102104 - Loop-Mediated Isothermal Amplification Protocol-Based and Automatic Image Processing Device (PCT/TR2023/051240) (link)

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alperaytarim@gmail.com , alperay@seas.upenn.edu