Publications

*Note name change from E. A. Andruszkiewicz to E. Andruszkiewicz Allan.

Peer-Reviewed Publications

2023

E. Andruszkiewicz Allan*, R. P. Kelly*, E. R. D’Agnese, M. N. Garber-Yonts, M. R. Shaffer, Z. J. Gold, A. O. Shelton. 2023. Quantifying Impacts of an Environmental Intervention Using Environmental DNA. Ecological Applications, e2914. Link. *Authors contributed equally to this manuscript.

E. R. D’Agnese, D. Chase, E. Andruszkiewicz Allan. 2023. Isothermal Recombinant Polymerase Amplification and CRISPR (Cas12a) Assay Detection of Renibacterium Salmoninarum as an Example for Wildlife Pathogen Detection in Environmental DNA Samples. Journal of Wildlife Disease, 59(4):545-556. Link.  

K. Lee, R. P. Kelly, E. Demir-Hilton, E. Laschever, E. Andruszkiewicz Allan. 2023. Adoption of Environmental DNA in Public Agency Practice. Environmental DNA, 00:1-14. Link.

E. D. Stein, C. L. Jerde, E. Andruszkiewicz Allan, A. J. Sepulveda, C. L. Abbott, M. R. Baerwald, J. Darling, K. D. Goodwin, R. S. Meyer, M. Timmers, P. M. Thielen. 2023. Critical Considerations for Communicating Environmental DNA Science. Environmental DNA, 00:1-12. Link.

Z. J. Gold, A. O. Shelton, H. R. Casendino, J. Duprey, R. Gallego, A. Van Cise, M. Fisher, A. J. Jensen, E. R. D’Agnese, E. Andruszkiewicz Allan, A. Ramon-Laca, M. Garber-Yonts, M. Labare, K. M. Parsons, R. P. Kelly. 2023. Signal and Noise in Metabarcoding Data. PLOS ONE, 18(5): e0285674. Link. 

R. P. Kelly, D. M. Lodge, K. Lee, S. Theroux, A. Sepulveda, C. Scholin, J. Craine, E. Andruszkiewicz Allan, K. Nichols, K. Parsons, K. Goodwin, Z. Gold, F. Chavez, R. Noble, C. Abbott, M. Baerwald, A. Naaum, P. Thielen, A. Simons, C. Jerde, J. Duda, M. Hunter, J. Hagan, R. Meyer, J. Steele, M. Stoeckle, H. Bik, C. Meyer, E. Stein, K. James, A. Thomas, E. Demir-Hilton, M. Timmers, J. Griffith, M. Weise, S. Weisberg. 2023. Toward a National eDNA Strategy. Environmental DNA, 00:1-10. Link.

A. F. Govindarajan, A. Adams, E. Andruszkiewicz Allan, S. Herrera, A. Lavery, J. Llopiz, L McCartin, D. Yoerger, W. Zhang. 2023. Advances in Environmental DNA Sampling for Observing Ocean Twilight Zone Diversity. Oceanography, 36:1. Link. 

2022

A. F. Govindarajan, L. McCartin, A. Adams, E. Andruszkiewicz Allan, A. Belani, R. Francolini, J. Fujii, D. Gomez-Ibañez, A. Kukulya, F. Marin, K. Tradd, D. R. Yoerger, J. M. McDermott, S. Herrera. 2022. Improved biodiversity detection using a large-volume environmental DNA sampler with in situ filtration and implications for marine eDNA sampling strategies. Deep-Sea Research Part I, 189 (2022) 103871. Link.  

A. O. Shelton, Z. J. Gold, A. J. Jensen, Erin D’Agnese, E. Andruszkiewicz Allan, A. Van Cise, R. Gallego, A. Ramón-Laca, M. Garber-Yonts, K. Parsons, R. P. Kelly. 2022. Toward Quantitative Metabarcoding. Ecology, 104:e3906. Link.

2021

E. Andruszkiewicz Allan, M. H. DiBenedetto, A. C. Lavery, A. F. Govindarajan, W. G. Zhang. 2021. Modeling characterization of the vertical and temporal variability of environmental DNA in the mesopelagic ocean. Scientific Reports, 11:21273. Link. 

A. B. Carlisle, E. Andruszkiewicz Allan, S. Kim, L. Meyer, J. Port, S. Cherrer, J. O'Sullivan. 2021. Integrating multiple chemical tracers to elucidate the diet and habitat of Cookiecutter sharks. Scientific Reports, 11:11809. Link.

2020

E. Andruszkiewicz Allan, W. G. Zhang, A. C. Lavery, A. F. Govindarajan. 2020. Environmental DNA shedding and decay rates from diverse animal forms and thermal regimes. Environmental DNA, 3:141. Link. 

E. A. Andruszkiewicz, K. M. Yamahara, C. J. Closek, A. B. Boehm. 2020. Quantitative PCR assays to detect whales, rockfish, and common murre environmental DNA in marine water samples of the Northeastern Pacific. PLOS ONE, 15(12). Link.

A. Djurhuus, C. J. Closek, R. P. Kelly, K. J. Pitz, R. P. Michisaki, H. A. Starks, K. R. Walz, E. A. Andruszkiewicz, E. Olesin, K. Hubbard, E. Montes, D. Otis, F. E. Muller-Karger, F. P. Chavez, A. B. Boehm, M. Breitbart. 2020. Environmental DNA reveals seasonal shifts and potential interactions in a marine community. Nature Communications, 11:254. Link. 

2019

C. J. Closek, J. A. Santora, H. A. Starks, I. D. Schroeder, E. A. Andruszkiewicz, K. M. Sakuma, S. J. Bograd, E. L. Hazen, J. C. Field, A. B. Boehm. 2019. Marine vertebrate biodiversity and distribution within the central California Current using environmental DNA (eDNA) metabarcoding and ecosystem surveys. Frontiers in Marine Science, 6:732. Link. 

E. A. Andruszkiewicz, J. R. Koseff, O. B. Fringer, N. T. Ouellette, A. B. Lowe, C. A. Edwards, A. B. Boehm. 2019. Modeling environmental DNA transport in the coastal ocean using Lagrangian particle tracking. Frontiers in Marine Science, 6:477. Link.

N. K. Truelove*, E. A. Andruszkiewicz*, B. A. Block. 2019. A rapid eDNA method for detecting white sharks in the open ocean. Methods in Ecology and Evolution, 12: e0185043-e0185048. Link. *Authors contributed equally to this manuscript. 

2017

E. A. Andruszkiewicz, L. M. Sassoubre, A. B. Boehm. 2017. Persistence of marine fish environmental DNA and the influence of sunlight. PLOS ONE, 12(9): e0185043. Link. 

A. J. Shogren, J. L. Tank, E. A. Andruszkiewicz, B. P. Olds, A. R. Mahon, C. L. Jerde, D. Bolster. 2017. Controls on eDNA movement in stream: Transport, Retention, and Resuspension. Scientific Reports, 7(5065).  Link.

E. A. Andruszkiewicz, H. A. Starks, F. P. Chavez, L. M. Sassoubre, B. A. Block, A. B. Boehm. 2017. Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding. PLOS ONE, 12(4): e0176343. Link. 

A. B. Boehm, N. S. Ismail, L. M. Sassoubre, E. A. Andruszkiewicz. 2017. Oceans in peril: Grand challenges in applied water quality research for the 21st century. Environmental Engineering Science, 34(1), 3-15. Link.​

2016

C. L. Jerde, B. P. Olds, A. J. Shogren, E. A. Andruszkiewicz, A. R. Mahon, D. Bolster, J. L. Tank, 2016. Influence of stream bottom substrate on retention and transport of vertebrate environmental DNA. Environmental Science and Technology, 50 (16), 8770-8779. Link.

A. J. Shogren, J. L. Tank, E. A. Andruszkiewicz, B. P. Olds, C. L. Jerde, D. Bolster, 2016. Modelling the transport of environmental DNA through a porous substrate using continuous flow-through column experiments. Journal of the Royal Society Interface, 13 (119), 2016020. Link.