Akhilesh Kumar Gupta and Alexey V. Krasnoslobodtsev, “Nucleic-Acid Based Approaches for Detection of microRNA”, RNA NanoMed, 2025; Published.

Elizabeth Skelly, Christina J. Bayard, Joel Jarusek, Benjamin Clark, Laura P. Rebolledo, Yasmine Radwan, Phong Nguyen, Melanie Andrade-Muñoz, Thomas A. Deaton, Alexander Lushnikov, Sharonda J. LeBlanc, Alexey V. Krasnoslobodtsev, Yaroslava G. Yingling, Kirill A. Afonin, "Design and Characterization of DNA-Driven Condensates: Regulating Topology, Mechanical Properties, and Immunorecognition", ACS Applied Materials and Interfaces, 2025; https://doi.org/10.1021/acsami.5c00428

Akhilesh Kumar Gupta and Alexey V. Krasnoslobodtsev, “Fueling the Future: The Emergence of Self-Powered Enzymatic Biofuel Cell Biosensors”, Biosensors, 2024; 14(7), 316; https://doi.org/10.3390/bios14070316.

BOOK CHAPTER: Alexey Krasnoslobodtsev, Atomic Force Microscopy and its spectroscopic combinations for studying self-assembled nanostructures. Book Chapter in “Supramolecular Nanotechnology: Advanced Design of Self-Assembled Functional Materials”, Wiley & Sons, 2023, Eds: Omar Azzoroni and Martin Conda-Sheridan, Chapter 30. https://onlinelibrary.wiley.com/doi/10.1002/9783527834044.ch30.

BOOK CHAPTER: Alexander Lushnikov, Yelixza I. Avila, Kirill Afonin, and Alexey Krasnoslobodtsev, Characterization of RNA Nanoparticles and Their Dynamic Properties Using Atomic Force Microscopy, Book Chapter in "Methods in Molecular Biology", Springer Nature, 2023, pp. 191-202, Ed.: K. A. Afonin. https://link.springer.com/protocol/10.1007/978-1-0716-3417-2_12. 

BOOK CHAPTER: Akhilesh Kumar Gupta, Joel Petersen, Elizabeth Skelly, Kirill Afonin, and Alexey Krasnoslobodtsev, Small Volume Microrheology to Evaluate Viscoelastic Properties of Nucleic Acid-based Supra Assemblies, Book Chapter in "Methods in Molecular Biology", Springer Nature, 2023, pp. 179-189, Ed.: K. A. Afonin. https://link.springer.com/protocol/10.1007/978-1-0716-3417-2_11. 

Dylan Fredrick, Liam Yourston, and Alexey V. Krasnoslobodtsev, Detection of cancer-associated miRNA using fluorescence switch of AgNC@NA and guanine-rich overhang sequences, Journal of Biological and Chemical Luminescence, 2023, 1. https://doi.org/10.1002/bio.4471. 

Akhilesh Kumar Gupta and Alexey V. Krasnoslobodtsev, DNA-Templated Silver Nanoclusters as Dual-Mode Sensitive Probes for Self-Powered Biosensor Fueled by Glucose; Nanomaterials 2023, 13(8), 1299.   

Shipra Solanki, Akhilesh Kumar Gupta, Udiptya Saha, Alexey V. Krasnoslobodtsev, Rajinder K. Gupta, Bansi D. Malhotra; Triboelectric Nanogenerator-based Smart Biomedical Sensors for Healthcare; Sustainable Energy Technologies and Assessments, 2023; 57, 103233.

Akhilesh Kumar Gupta, Nolan Marshall, Liam Yourston, Lewis Rolband, Damian Beasock, Leyla Danai, Elizabeth Skelly, Kirill A. Afonin, and Alexey V. Krasnoslobodtsev; Optical, structural, and biological properties of silver nanoclusters formed within the loop of C-12 hairpin sequence; Nanoscale Advances, 2023, 5, 3500 - 3511.

Jamison Duckworth and Alexey Krasnoslobodtsev, “Modular Micro Raman Reader Instrument for Fast SERS-Based Detection of Biomarkers”, Micromachines, 2022; 13 (10), 1570.  

Nolan File, Joseph Carmicheal, Alexey V. Krasnoslobodtsev, Nicole C. Japp, Joshua J. Souchek, Sudesna Chakravarty, Michael A. Hollingsworth, Aaron A. Sasson, Gopalakrishnan Natarajan, Prakash G. Kshirsagar, Maneesh Jain, Chihiro Hayashi, Wade M. Junker, Sukhwinder Kaur, and Surinder Batra, “Substituent Effects Impact Surface Charge and Aggregation of Thiophenol-Labeled Gold Nanoparticles for SERS Biosensors”, Biosensors, 2022; 12 (1), 25.

Xuejing Shen, Tao Sun, Lei Yang, Alexey Krasnoslobodtsev, Renat Sabirianov, Michael Sealy, Wai-Ning Mei, Zhanjun Wu, and Li Tan, “Ultra-fast Charging in Aluminum-Ion Batteries: Nanofeatures of the Electric Double Layers on Active Anode”, Nature Communications, 2021, 12, 820.

Lewis Rolband, Liam Yourston, Morgan Chandler, Damian Beasock, Leyla Danai, Seraphim Kozlov, Nolan Marshall, Oleg Shevchenko, Alexey V. Krasnoslobodtsev, Kirill A. Afonin, “DNA-templated Fluorescent Silver Nanoclusters Inhibit Bacterial Growth while being Non-toxic to Mammalian Cells”, Molecules, 2021, 26(13), 4045.

Liam Yourston, Polikron Dhoqina, Nolan Marshall, Rujani Mahmud, Ethen Kuether, Alexey Krasnoslobodtsev, “Hg2+ detection with rationally designed DNA-templated fluorescent silver nanoclusters”, Processes, 2021, 9(10), 1699.

Liam Yourston and Alexey Krasnoslobodtsev, “Micro RNA Sensing with Green Emitting Silver Nanoclusters”, Molecules, 2020; 25(13), 3026.

Liam Yourston, Lewis Rolband, Alexander Lushnikov, Caroline West, Kirill Afonin, Alexey Krasnoslobodtsev, “Tuning properties of silver nanoclusters with RNA nanoring assemblies”, Nanoscale, 2020; 12, 16189-16200.

Congcong Xu, Kaiming Zhang, Hongran Yin, Zhefeng Li, Alexey Krasnoslobodtsev, Zhen Zheng, Zhouxiang Ji, Sijin Guo, Shanshan Li, Wah Chiu, and Peixuan Guo, “3D RNA nanocage for encapsulation and shielding of hydrophobic biomolecules to improve the in vivo biodistribution”, NanoResearch, 2020; 13, 3241–3247. 

Joseph Carmicheal; Chihiro Hayashi; Xi, Huang; Lei Liu; Yao Lu; Alexey Krasnoslobodtsev; Alexander Lushnikov; Prakash Kshirsagar; Asish Patel; Maneesh Jain; Yuri Lyubchenko; Yongfeng Lu; Surinder Batra; Sukhwinder Kaur, “Label-free Characterization of Exosome via Surface Enhanced Raman Spectroscopy for the Early Detection of Pancreatic Cancer”, Nanomedicine: Nanotechnology, Biology and Medicine, 2019; 16, 88-96. 

Liam E. Yourston; Alexander Y. Lushnikov; Oleg A. Shevchenko; Kirill A. Afonin; Alexey V Krasnoslobodtsev, “First Step Towards Larger DNA-Based Assemblies of Fluorescent Silver Nanoclusters: Template Design and Detailed Characterization of Optical Properties”, Nanomaterials, 2019; 9(4), 613.

Cole P. Frisbie, Alexander Y. Lushnikov, Alexey V. Krasnoslobodtsev, Jean-Jack M. Riethoven, Jennifer L. Clarke, Elena I. Stepchenkova and Armen Petrosyan, “Post-ER Stress Biogenesis of Golgi Is Governed by Giantin”, Cells, 2019; 8, 1631.

BOOK CHAPTER: Alexander Lushnikov, Richard Hooy, Jungsan Sohn, and Alexey Krasnoslobodtsev, Characterization of DNA bound cyclic GMP-AMP synthase using atomic force microscopy imaging. Book Chapter in Methods in Enzymology, Academic Press, 2019, Volume 625, p. 2-281.

Sameer Sajja, Morgan Chandler, Dmitry Fedorov, Wojciech K. Kasprzak, Alexander Lushnikov, Mathias Viard, Ankit Shah, Dylan Dang, Jared Dahl, Beamlak Worku, Marina A. Dobrovolskaia, Alexey Krasnoslobodtsev, Bruce A. Shapiro, Kirill A. Afonin, “Dynamic behavior of RNA nanoparticles analyzed by AFM on a mica/air interface”, Langmuir, 2018; 34(49), 15099-15108.

Wang, Ying; Shi, Wen; Kuss, Mitchell; Mirza, Sameer; Qi, Dianjun; Krasnoslobodtsev, Alexey; Zeng, Jiping; Band, Hamid; Band, Vimla; Duan, Bin, "3D Bioprinting of Breast Cancer Models for Drug Resistance Study", ACS Biomaterials Science & Engineering, 2018; 4(12), 4401-4411.

Joseph Smolsky and Alexey Krasnoslobodtsev, “Nanoscopic imaging of oxidized graphene monolayer using Tip-Enhanced Raman Scattering”, NanoResearch, 2018; 11(12), 6346–6359.

Qi, Dianjun; Wu, Shaohua; Lin, Haishuang; Kuss, Mitchell; Lei, Yuguo; Krasnoslobodtsev, Alexey; Ahmed, Shaheen; Zhang, Chi; Kim, Hyung Joon; Jiang, Peng; Duan, Bin; "Establishment of a Human iPSC- and Nanofiber-based Microphysiological Blood-Brain Barrier System", ACS Applied Materials & Interfaces, 2018; 10, 21825−21835.

J. Smolsky, S. Kaur, Ch. Hayashi, S. Batra, and A. Krasnoslobodtsev, “Surface Enhanced Raman Scattering-Based Immunoassay Technologies for Detection of Disease Biomarkers”, Biosensors, 2017; 7, 7.

Alexey V Krasnoslobodtsev, Tanja Deckert-Gaudig, Yuliang Zhang, Volker Deckert, Yuri L Lyubchenko, “Polymorphism of amyloid fibrils formed by a peptide from the yeast prion protein Sup35: AFM and Tip-Enhanced Raman Scattering studies”, Ultramicroscopy, 2016; 165: 26-33.

Zhengjian Lv, Alexey V Krasnoslobodtsev, Yuliang Zhang, Daniel Ysselstein, Jean‐Christophe Rochet, Scott C Blanchard, Yuri L Lyubchenko, “Effect of acidic pH on the stability of α-synuclein dimers”, Biopolymers, 2016; 105(10): 715–724.

Alexey V. Krasnoslobodtsev, María P. Torres, Sukhwinder Kaur, Ivan V. Vlassiouk, Robert J. Lipert, Maneesh Jain, Surinder K. Batra, and Yuri L. Lyubchenko. “Nano-immunoassay with improved performance for detection of cancer biomarkers”, Nanomedicine: Nanotechnology, Biology and Medicine, 2015; 11(1): 167-173.

Krasnoslobodtsev, A.V., Zhang, Yu., Viazovkina, E., Gall, A., Bertagni, Ch., and Lyubchenko, Y.L., “A Novel Flexible Nanoarray Approach for the Assembly and Probing of Molecular Complexes”, Biophys. Journal, 2015; 108(9): 2333-2339.

Lv, Zh., Krasnoslobodtsev, A.V., Zhang, Yu., Ysselstein, D., Rochet, J.C., Blanchard, S. and Lyubchenko, Y.L., “Direct Detection of α-Synuclein Dimerization Dynamics: Single-Molecule Fluorescence Analysis”, Biophys. Journal. 2015; 108(8): 2038–2047.

BOOK CHAPTER: Yuri L. Lyubchenko, Yuliang Zhang, Alexey V. Krasnoslobodtsev and Jean-Christophe Rochet. Nanoimaging for Nanomedicine. Book Chapter in the Handbook of Clinical Nanomedicine: From Bench to Bedside, by Raj Bawa, Ed., Gerald F. Audette, Ed., Israel Rubinstein, Ed., Pan Stanford Publishing. 2015.

Alexey V. Krasnoslobodtsev, Ivan L. Volkov, Josephat M. Asiago, Jagadish Hindupur, Jean-Christophe Rochet, and Yuri L. Lyubchenko. “Alpha-Synuclein Misfolding Assessed with Single Molecule AFM Force Spectroscopy: Effect of Pathogenic Mutations”, Biochemistry, 2013; 52(42): 7377-7386.

Zenghan Tong, Andrey Mikheikin, Alexey Krasnoslobodtsev, Zhengjian Lv, Yuri L. Lyubchenko. “Novel Polymer Linkers for Single Molecule AFM Force Spectroscopy”, Methods, 2013; 60(2): 161–168.

Alexey V. Krasnoslobodtsev, Jie Peng, Josephat M. Asiago, Jagadish Hindupur, Jean-Christophe Rochet and Yuri L. Lyubchenko. “Effect of Spermidine on Misfolding and Interactions of Alpha-Synuclein”, PLoS ONE, 2012; 7(5): e38099.

Alexander Portillo, Alexey V. Krasnoslobodtsev, and Yuri L. Lyubchenko. “Effects of Electrostatics on Aggregation of Prion Protein Sup35 Peptide”, Journal of Physics Condensed Matter, 2012; 24(16): 164205-164215.

Alexey V. Krasnoslobodtsev, Alexander M. Portillo, Tanja Deckert-Gaudig, Volker Deckert and Yuri L. Lyubchenko. “Nanoimaging for Prion Related Diseases”, Prion, 2010; 4(4): 265-274.

Yuri L. Lyubchenko, Bo-Hyun Kim, Alexey V. Krasnoslobodtsev, and Junping Yu. “Nanoimaging for Protein Misfolding Diseases”, Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology, 2010; 2(5): 526-543.

Mikhail A. Karymov, Alexey V. Krasnoslobodtsev, and Yuri L. Lyubchenko. “Stability of Synaptic SfiI – DNA Complex: Single Molecule Fluorescence Analysis”, Biophysical Journal, 2007; 92(9): 3241-3250.

Alexey V. Krasnoslobodtsev, Luda S. Shlyakhtenko, and Yuri L. Lyubchenko. “Probing Interactions within the Synaptic DNA-SfiI Complex by AFM Force Spectroscopy”, J. Mol. Biol., 2007; 365: 1407-1416.

Alexey V. Krasnoslobodtsev and Sergei N. Smirnov. “Surface-Assisted Transient Displacement Charge Technique. I. Photoinduced Charge Transfer in Self-Assembled Monolayers”, J. Phys. Chem. B., 2006; 110 (36): 17931-17940.

Alexey V. Krasnoslobodtsev and Sergei N. Smirnov. “Surface-Assisted Transient Displacement Charge Technique. II. Effect of Gases on Photoinduced Charge Transfer in Self-Assembled Monolayers”, J. Phys. Chem. B., 2006; 110 (36): 17941-17948.

Alexey V. Kransnoslobodtsev, Luda S. Shlyakhtenko, Egor Ukraintsev, Tatyana O. Zaikova, John F. W. Keana, and Yuri L. Lyubchenko. “Nanomedicine and Protein Misfolding Diseases”, Nanomedicine: Nanotechnology, Biology and Medicine, 2005; 1 (4): 300-305.

BOOK CHAPTER: Yuri L. Lyubchenko, Alexey V. Krasnoslobodtsev, and Sorin Luca. “Fibrillogenesis of Huntingtin and Other Glutamine-Containing Proteins.” Book Chapter in Protein Aggregation and Fibrillogenesis in Cerebral and Systemic Amyloid Disease by J. R. Harris, Ed., Springler, 2012, p. 225-51.

Ivan Vlassiouk, Alexey Krasnoslobodtsev, Sergei Smirnov, and Markus Germann. “Direct Detection and Separation of DNA Using Nanoporous Alumina Filters”,  Langmuir,  2004; 20: 9913-9915.

A. V. Krasnoslobodtsev and S. N. Smirnov. “Effect of Water on Silanization of Silica by Trimethoxysilanes”,  Langmuir, 2002; 18: 3181-3184.

A. V. Krasnoslobodtsev and S. N. Smirnov. “Surface Assisted Intermolecular Interactions in Self-Assembled Coumarin Submonolayers”,  Langmuir, 2001; 17: 7593-7599.

A. G. Stepanov, M. V. Luzgin, A. V. Krasnoslobodtsev, V. P. Shmachkova, and N. S. Kotsarenko. “Alkane Carbonylation with Carbon Monoxide on Sulfated Zirconia. NMR Observation of Ketone and Carboxylic Acid Formation from iso-Butane and CO”, Angew. Chem. Int. Ed., 2000; 39: 3658.