Publications
Pre-prints
X Wang, RP Kelly, DJ Warne, C Drovandi. (2024) Preconditioned neural posterior estimation for likelihood-free inference. arXiv.org
RP Kelly, DJ Nott, DT Frazier, DJ Warne, C Drovandi. (2023) Misspecification-robust sequential neural likelihood. arXiv.org
DJ Warne, A Varghese, AP Browning, MM Krell, C Drovandi, W Hu, A Mira, K Mengersen, AL Jenner. (2022) Bayesian uncertainty quantification to identify population level vaccine hesitancy behaviours. medRix.org
JJ Bon, DJ Warne, DJ Nott, C Drovandi. (2022) Bayesian score calibration for approximate models. arXiv.org
DJ Warne, RE Baker, MJ Simpson (2016) Accelerating computational Bayesian inference for stochastic biochemical reaction network models using multilevel Monte Carlo sampling. bioRxiv.org
Published Articles
MD Akinlotan, DJ Warne, KJ Helmstedt, SA Vollert, I Chadès, RF Heneghan, H Xiao, MP Adams. (2024) Beyond expected values: Making environmental decisions using value of information analysis when measurement outcome matters. Ecological Indicators, 160:111828 DOI arXiv.org
K Cure, DR Barneche, M Depczynski, R Fisher, DJ Warne, JM McGree, J Underwood, F Weisenberger, E Evans-Illidge, B Ford, D Oades, A Howard, P McCarthy, D Pyke, Z Edgar, R Maher, T Sampi, K Dougal, Bardi Jawi Traditional Owners . (2024) Incorporating uncertainty in Indigenous sea Country monitoring with Bayesian statistics: towards more informed decision-making. Ambio DOI arXiv.org
X Wang, AL Jenner, R Salomone, DJ Warne, C Drovandi. (2024) Calibration of agent based models for monophasic and biphasic tumour growth using approximate Bayesian computation. Journal of Mathematical Biology 88:28 DOI bioRxiv.org
DJ Warne, OJ Maclaren, EJ Carr, MJ Simpson, C Drovandi. (2024) Generalised likelihood profiles for models with intractable likelihoods. Statistics and Computing 34:50 DOI arXiv.org
TP Prescott, DJ Warne, RE Baker. (2024) Efficient multifidelity likelihood-free Bayesian inference with adaptive computational resource allocation. Journal of Computational Physics 112577 DOI arXiv.org
J Yang, H McClymont, DJ Warne, L Wang, W Hu. (2023) Comparative Analysis of Vaccine Inequity and COVID-19 Transmission Amid the Omicron Variant Among Countries — Six Countries, Asia-Pacific Region, 2022. China CDC Weekly, 5(33):731-736 DOI
T Balasubramaniam, DJ Warne, R Nayak, K Mengersen. (2023) Explainability of the COVID-19 epidemiological model with nonnegative tensor factorization. International Journal of Data Science and Analytics, 15:267-280 DOI
A Gill, DJ Warne, AM Overstall, C McGrory, JM McGree. (2023) Robust simulation design for generalized linear models in conditions of heteroscedasticity or correlation. Proceedings of the 2022 Winter Simulation Conference (WSC). DOI arXiv.org
RJ Murphy, OJ Maclaren, AR Calabrese, PB Thomas, DJ Warne, ED Williams, MJ Simpson. (2022) Computationally efficient framework for diagnosing, understanding, and predicting biphasic population growth. Journal of the Royal Society Interface, 19:20220560 DOI bioRxiv.org
DJ Warne, TP Prescott, RE Baker, MJ Simpson. (2022) Multifidelity multilevel Monte Carlo to accelerate approximate Bayesian parameter inference for partially observed stochastic processes. Journal of Computational Physics, 469:111543 DOI arXiv.org
MJ Simpson, AP Browning, DJ Warne, OJ Maclaren, RE Baker. (2022) Parameter identifiability and model selection for sigmoid population growth models. Journal of Theoretical Biology, 535:110998 DOI bioRxiv.org
DJ Warne, RE Baker, MJ Simpson. (2022) Rapid Bayesian inference for expensive stochastic models. Journal of Computational and Graphical Statistics, 31:512-528 DOI arXiv.org
DJ Warne, KA Crossman, W Jin, K Mengersen, K Osborne, MJ Simpson, AA Thompson, P Wu, J‐C Ortiz. (2022) Identification of two‐phase recovery for interpretation of coral reef monitoring data. Journal of Applied Ecology, 59:153-164 DOI
DJ Warne, SA Sisson, C Drovandi. (2022) Vector operations for accelerating Bayesian computation -- A tutorial guide. Bayesian Analysis, 17(2):593-622 DOI arXiv.org
SA Vollert, R Salomone, G Monsalve-Bravo, MP Adams, DJ Warne (2021) Model selection and sloppiness in ecology. In The International Congress on Modelling and Simulation (MODSIM21), Sydney, Australia. URL
D.J Warne, A Ebert, C Drovandi, W Hu, A Mira, K Mengersen. (2020) Hindsight is 2020 vision: a characterisation of the global response to the COVID-19 pandemic. BMC Public Health 20:1868 DOI medRxiv.org
AP Browning, DJ Warne, K Burrage, RE Baker, MJ Simpson. (2020) Identifiability analysis for stochastic differential equation models in systems biology. Journal of the Royal Society Interface, 17:20200652 DOI bioRxiv.org
DJ Warne, RE Baker , MJ Simpson. (2020) A practical guide to pseudo-marginal methods for computational inference in systems biology. Journal of Theoretical Biology, 496:110255 DOI arXiv.org
DJ Warne, RE Baker, MJ Simpson. (2019) Simulation and inference algorithms for stochastic biochemical reaction networks: from basic concepts to state-of-the-art. Journal of the Royal Society Interface, 16:20180943 DOI arXiv.org
DJ Warne, RE Baker, MJ Simpson. (2019) Using experimental data and information criteria to guide model selection for reaction–diffusion problems in mathematical biology. Bulletin of Mathematical Biology, 81:1760–1804 DOI bioRxiv.org
DJ Warne, RE Baker, MJ Simpson. (2018) Multilevel rejection sampling for approximate Bayesian computation. Computational Statistics & Data Analysis, 124:71–86 DOI arXiv.org
D Agdas, DJ Warne, J Osio-Norgaard, FJ Masters. (2018) Utility of genetic algorithms for solving large-scale construction time-cost trade-off problems. Journal of Computing in Civil Engineering, 32:04017072 DOI
DJ Warne, RE Baker, MJ Simpson. (2017) Optimal quantification of contact inhibition in cell populations. Biophysical Journal, 113: 1920–1924 DOI arXiv.org
AS Hurn, KA Lindsay, DJ Warne. (2016) A heterogeneous computing approach to maximum likelihood parameter estimation for the Heston model of stochastic volatility. The ANZIAM Journal, 57:C364-381 DOI
DJ Warne, RF Hayward. (2015) The dynamics of cellular automata on 2-manifolds is affected by topology. Journal of Cellular Automata, 10:319-339.
HJ Macintosh, DJ Warne, NA Kelson, JE Banks, TW Farrell. (2015) Implementation of parallel tridiagonal solvers for a heterogeneous computing environment. The ANZIAM Journal 56, C446-C462 DOI
DJ Warne, NA Kelson, RF Hayward. (2014) Comparison of high level FPGA hardware design for solving tri-diagonal linear systems. Procedia Computer Science, 29:95–101 DOI
DJ Warne, RF Hayward, NA Kelson, JE Banks, L. Mejias. (2014) Pulse-coupled neural network performance for real-time identification of vegetation during forced landing. The ANZIAM Journal, 55:C1–C16 DOI
DJ Warne, G Larsen, J Young, ME Cox. (2013) Image-based flow visualisation (IBFV) to enhance interpretation of complex flow patterns within a shallow tidal barrier estuary. Environmental Modelling & Software, 47:64-73 DOI
DJ Warne, RF Hayward, NA Kelson, DG Mallet. (2013) An efficient algorithm for the detection of Eden. Complex Systems, 22:377-404 DOI
DJ Warne, J Young, NA Kelson. (2013) Visualisation of complex flows using texture-based techniques. The ANZIAM Journal, 54:C1-C13 DOI
M Al-Roumi, K Biggerstaff, DJ Warne, AL Fielding. (2013) Calibration of treatment time intensity modulated EPID images for anatomical imaging. In Engineering and Physical Sciences in Medicine Conference (EPSM2013). URL
DJ Warne, NA Kelson, RF Hayward. (2012) Solving tri-diagonal linear systems using field programmable gate arrays. In Proceedings of the 4th International Conference on Computational Methods (ICCM2012). URL
T Kairn, D Warne, J Kenny, AL Fielding, JV Trapp, M Dwyer. (2012) Corrigendum to “Accurately simulating the production of radiotherapy portal images using non-zero beam angles” [Radiat. Meas. 46 (2011) 1967-1970]. Radiation Measurements, 47:565 DOI
F Melchels, PS Wiggenhauser, D Warne, M Barry, FR Ong, WS Chong, DW Hutmacher, J-T Schantz. (2011) CAD/CAM-assisted breast reconstruction. Biofabrication 3:034114 DOI
T Kairn, D Warne, J Kenny, M Dwyer. (2011) Accurately simulating the production of radiotherapy portal images using non-zero beam angles. Radiation Measurements, 46:1967-1970 DOI