Resources
Codes to our most recent results are available at our GitHub repository
Moreno, D.F., Jenkins, K., Morlot, S., Charvin, G., Csikász-Nagy, A., and Aldea, M. (2019). Proteostasis collapse, a hallmark of aging, hinders the chaperone-Start network and arrests cells in G1 eLife, 8:e48240. Link
https://www.ebi.ac.uk/biomodels/MODEL1901210001
Moreno, D. F., Parisi, E., Yahya, G., Vaggi, F., Csikász-Nagy, A., & Aldea, M. (2019). Competition in the chaperone-client network subordinates cell-cycle entry to growth and stress. Life Science Alliance, 2(2), e201800277. Link
https://www.ebi.ac.uk/biomodels/MODEL1808310001
Hong CI, Zámborszky J, Csikász-Nagy A. Minimum criteria for DNA damage-induced phase advances in circadian rhythms. PLoS Comput. Biol. 2009 May; 5(5): e1000384
https://www.ebi.ac.uk/biomodels-main/BIOMD0000000216
Conradie R, Bruggeman FJ, Ciliberto A, Csikász-Nagy A, Novák B, Westerhoff HV, Snoep JL. Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex. FEBS J. 2010 Jan; 277(2): 357-367
https://www.ebi.ac.uk/biomodels-main/BIOMD0000000265
Moriya H, Chino A, Kapuy O, Csikász-Nagy A, Novák B. Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico. Mol. Syst. Biol. 2011; 7: 556
https://www.ebi.ac.uk/biomodels-main/BIOMD0000000406
Amara F, Colombo R, Cazzaniga P, Pescini D, Csikász-Nagy A, Falconi MM, Besozzi D, Plevani P. In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae. BMC Syst Biol 2013; 7: 24
https://www.ebi.ac.uk/biomodels-main/BIOMD0000000475
Project dedicated websites
Honeth G, Schiavinotto T, Vaggi F, Marlow R, Kanno T, Shinomiya I, Lombardi S, Buchupalli B, Graham R, Gazinska P, Ramalingam V, Burchell J, Purushotham AD, Pinder SE, Csikasz-Nagy A, Dontu G. (2015) Models of Breast Morphogenesis Based on Localization of Stem Cells in the Developing Mammary Lobule. Stem Cell Reports 4,: 699-711.
https://github.com/FedericoV/FractalMammaryLobule
Vaggi F, Schiavinotto T, Lawson JLD, Chessel A, Dodgson J, Geymonat M, Sato M, Carazo-Salas RE, Csikász-Nagy A (2014) A network approach to mixing delegates at meetings. eLife 3:e02273
https://github.com/FedericoV/conference_pairings
Csikász-Nagy A, Escudero LM, Guillaud M, Sedwards S, Baum B, Cavaliere M. (2013) Cooperation and competition in the dynamics of tissue architecture during homeostasis and tumorigenesis. Seminars in Cancer Biology 23:293-298
https://sites.google.com/site/dynamiccooperativenetworks/planar-tissue
Cavaliere M, Sedwards, S, Tarnita CE, Nowak MA, Csikász-Nagy A (2012) Prosperity is associated with instability in dynamical networks. J Theor Biol 299:126-138
https://sites.google.com/site/dynamiccooperativenetworks/
Csikász-Nagy, A., Győrffy, B., Alt, W., Tyson, J.J. & Novák, B., (2008) Spatial controls for growth zone formation during the fission yeast cell cycle. Yeast, 25: 59–69.
http://www.cellcycle.bme.hu/morphopaper/
Csikasz-Nagy A, Battogtokh D, Chen KC, Novák B & Tyson JJ. (2006) Analysis of a generic model of eukaryotic cell cycle regulation. Biophys J 90, 4361-4379
http://mpf.biol.vt.edu/research/generic_model/main/pp/
Chen KC, Calzone L, Csikasz-Nagy A, Cross FR, Novak B, Tyson JJ. (2004) Integrative Analysis of Cell Cycle Control in Budding Yeast. Mol Biol Cell 15, 3841-3862.
Recorded lectures
Spatial modelling (in Hungarian) https://www.youtube.com/watch?v=FRidEIW39Jg
Fission yeast cell cycle and cell growth http://online.kitp.ucsb.edu/online/bioclocks07/csikasznagy/