General references

Cohen, Kevin & Verspoor, Karin & Fort, Karën & Funk, Christopher & Bada, Michael & Palmer, Martha & Hunter, Lawrence. (2017). The Colorado Richly Annotated Full Text (CRAFT) Corpus: Multi-Model Annotation in the Biomedical Domain. 10.1007/978-94-024-0881-2_53. [link]

Relevant to the Concept Annotation task

Bada, M., Eckert, M., Evans, D., Garcia, K., Shipley, K., Sitnikov, D., Baumgartner Jr., W. A., Cohen, K. B., Verspoor, K., Blake, J. A., and Hunter, L. E. (2012) Concept annotation in the CRAFT corpus. BMC Bioinformatics 12:161. [link]

Bada, M., Eckert, M., Palmer, M., and Hunter, L.E. (2010) An overview of the CRAFT annotation guidelines. Proceedings of the Fourth Linguistic Annotation Workshop, ACL 2010, pp. 207-211. [link]

Funk, C., Baumgartner, W.A., Garcia, B., Roeder, C., Bada, M., Cohen, K.B., Hunter, L.E., and Verspoor, K. (2014) Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinformatics 15:59. [link]

Bada, M., Vasilevsky, N., Baumgartner Jr., W.A., Haendel, M., and Hunter, L.E. (2017) Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. Database. Volume 2017, bax087. [link]

Relevant to the Structural Annotation task

Verspoor, K., Cohen, K.B., Lanfranchi, A., Warner, C., Johnson, H.L., Roeder, C., Choi, J.D., Funk, C., Malenkiy, Y., Eckert, M., Xue, N., Baumgartner Jr., W.A., Bada, M., Palmer, M., Hunter L.E. (2012) A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinformatics 13:207. [link]

Relevant to the Coreference Resolution task

Cohen, K.B., Lanfranchi, A., Choi, M.J., Bada, M., Baumgartner Jr., W.A., Panteleyeva, N., Verspoor, K., Palmer, M., and Hunter, L.E. (2017) Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC Bioinformatics 18:372. [link]