multiHIVE:
Hierarchical Multimodal Deep Generative Model for Single-cell Multiomics Integration
PHALCON:
Phylogeny-aware variant calling from large-scale single-cell panel sequencing datasets
scDREAMER:
Single-cell RNA - Seq integration across batches by removing batch effects
MARGARET:
Trajectory inference of scRNA seq
Renoir:
Spatial ligand-target interactions
Phylovar:
SNV(single-nucleotide variations) detector from scDNA
LinTIMaT:
Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic data
SiCloneFit:
Bayesian method that reconstructs the clonal populations
SiFit:
Method for tumor phylogenies from noisy sc-sequencing data under a finite-sites model
Monovar:
single-nucleotide variant detection in single cells
