The plant innate immune system is composed of two types of immune receptors: the PRRs (Pattern Recognition Receptors) and the NLRs (Nucleotide-binding domain Leucine-rich repeat Receptors). PRRs localize at the plasma membrane and detect extracellular PAMPs (Pathogen-Associated Molecular Patterns), whereas NLRs are intracellular proteins that detect the effector proteins secreted from pathogens. Upon the recognition of pathogen molecules, these immune receptors activate downstream signaling cascades, leading to PRR-mediated immunity and NLR-mediated immunity. Some NLRs work as functional singletons that detect pathogens and activate immune response on their own; however, some NLRs function together, in which one of them is a sensor NLR that detect the pathogen and the other one is a helper NLR that is essential for immune signaling.
植物先天性的免疫系統包含兩種類型的免疫受體:PRR及NLR。PRR位於細胞膜上,偵測胞外來自病原菌的PAMP,而NLR位於細胞內部,偵測由病原菌分泌到細胞內部的效應蛋白。在偵測到來自病原菌的分子之後,這些免疫受體活化下游防禦訊息傳遞,達成由PRR介導的免疫反應或由NLR介導的免疫反應。有些NLR可以單獨作用,不需依賴其他NLR來辨識病原菌及引發防禦反應。有些NLR則需共同作用,這些共同作用的NLR可以進一步地被分為可以辨識病原菌的“偵測型NLR”及引發下游免疫訊號的“輔助型 NLR”。
Recent discoveries showed that NLRs can work as in functional singletons, pairs and networks. In the solanaceous plants, the NRC network that confers resistance to various pathogens is composed of several sensor NLRs that detect different pathogen proteins, and three major helper NLRs (NRC2, NRC3 and NRC4) that are functionally redundant but display distinct specificities toward different sensor NLRs. Furthermore, the NRC family and NRC-dependent sensor NLRs are phylogenetically clustered into a well-supported superclade. These results reveal a complex genetic network beyond the ‘gene-for-gene’ hypothesis, and link immune signaling to the history of NLR gene evolution.
近期的研究發現NLR可以單獨作用、成對作用或是形成複雜的網絡。茄科植物的NRC免疫受體網絡由多個能夠辨識不同病原菌的偵測型NLR及三個主要的輔助型 NLR (NRC2, NRC3, 及NRC4)所組成。這三個NRC在功能上有部分的重疊性但又對不同的偵測型NLR具有專一性。除此之外,NRC家族和依賴NRC的偵測型NLR在演化樹上屬於同一個演化支內的不同分支。這些研究不僅顯示NLR免疫受體可以形成複雜的網絡來達成對於多種不同病原體的抗病性,更將NLR免疫受體的演化進程和涉及的免疫訊息傳遞進行連結。
Our research center on the evolutionary and functional dynamics of the plant immunity. We hope to address the following three questions about the NLR immune receptor network:
How do helper-sensor NLR proteins function together?
How does the NRC network specialize in different plant tissues?
How did the NRC network evolve in different plant lineages?
本實驗室的研究著重於了解植物免疫系統的演化及功能,我們希望能夠回答關於植物免疫受體網絡的以下三個問題:
輔助型 NLR與偵測型NLR如何協同作用?
NRC免疫網絡如何在不同植物組織有專一化的現象?
NRC免疫網絡在不同的植物演化支系內有什麼不同的演化進程?
The complex NRC network encompasses multiple NRC helper NLRs with overlapping functions as well as many sensor NLRs that recognize different pathogen molecules. The detailed mechanisms by which the sensor NLRs and helper NLRs function together are not clear. We will use different NRCs and their matching sensor NLRs to understand the molecular mechanisms by which the specificity between the sensor and helper NLRs is determined and address how the NLRs cooperate to confer disease resistance.
複雜的NRC免疫受體網絡包含了功能上具有重疊性的NRC輔助型NLR跟能夠辨識不同類型病原菌的偵測型NLR。但是,輔助型NLR與偵測型NLR共同作用的分子機制尚不清楚。我們將利用不同的NRC及對應的偵測型NLR來研究兩者之間專一性決定的機制,並了解NLR蛋白如何共同作用來達到抵抗病原菌入侵的效果。
Our conceptual understanding of plant innate immunity is mostly based on studies using aerial parts of the plants. Little is known about how plant innate immunity functions in the root systems that are exposed to a high density of diverse microorganisms. Focusing on the NRC network, we will dissect how plant immunity specialized in different plant organs and tissues, particularly in the root systems, to respond to the invasion of different pathogens.
我們對於植物先天性免疫系統的了解大多來自於利用植物地上部所做的研究。植物的根部會接觸到許多的微生物,但是我們對於植物先天性免疫系統在根部作用的了解甚少。我們將針對NRC免疫網絡在不同植物器官及組織的專一化進行研究,特別是針對植物的根部,以了解植物先天性免疫系統在植物不同部位專一化以對抗病原菌入侵的狀況。
To cope with rapidly evolving pathogens, the NLR gene family is one of the most fast-evolving gene families in plants. The NRC network originated from an ancestral helper-sensor NLR gene cluster that emerged predate the diversification between Caryophyllales and asterids of eudicots. In Solanaceae, this network has expanded to close to half amounts of NLRs in some species. The degree to which that NRC networks are expanded in other plant lineages is not clear. We will use comparative genomics and evolutionary approaches to understand the lineage-specific expansion patterns and the evolutionary history of the NRC network, particularly in the non-model plants outside of Solanaceae.
為了因應快速演化的植物病原體,NLR基因家族是植物演化最快速的基因家族之一。NRC免疫受體網絡由一個輔助型-偵測型NLR基因簇演化擴張而來,此基因簇的出現應早於石竹目和菊類植物的分歧。在一些茄科植物中,將近半數的NLR都屬於NRC免疫受體網絡。但NRC免疫受體網絡在其他植物演化分枝擴張的狀況則不清楚。我們將利用比較基因體學及演化分析的方法來研究NRC免疫受體網絡在不同的菊類植物演化枝有何不同的特化進程,以了解NRC免疫受體網絡對茄科以外非模式植物的免疫系統的貢獻。