Antibodies are a vital component of the immune system required for protection and control of infectious diseases. Beyond the traditional mechanism of neutralisation of pathogens (inhibition of the pathogen from infecting a cell), antibodies can act as beacons - instructing the innate immune system on how to attack and eliminate pathogens.
Our lab aims to apply cutting-edge high throughput experimental technologies, matched with computational analysis, to examine how these functional antibodies work, which will provide important insights to improve antibody-based vaccines and therapies. We currently have projects exploring antibody responses against a range of infectious diseases including HIV, Mycobacterium Tuberculosis, Malaria, Influenza and as well as the pathogenic role of antibodies in Autoimmune Diseases including Sjogrens and ARF.
The Dynamic and Diverse Complexity of Antibody Responses. The functional capacity of the humoral (Antibody) immune response is determined by complex biophysical antibody features including (panel 1) the ability of the antibody to recognise the pathogen, (panel 2) the structure of the antibody's Fc region, which in turn can modulate the antibodies capacity to engage with (panel 3) Fc receptor/immune molecules and (panel 4) availability of the Fc receptors on different effector cells/immune molecules in the surrounding environment.
Collectively, all these factors then dictate the functional antibody immune response induced
Arnold K.B. and Chung A.W. Prospects from Systems Serology Research. Immunology. 2018.
The coronavirus disease 19 (COVID-19) ongoing pandemic, caused by SARS-CoV2 has infected millions of people around the world and has caused over 4 million deaths. The pandemic has also caused significant economic and social disruptions. Our lab is focused on understanding the antibody responses induced by infection and Vaccination, including to emerging SARS-CoV2 variants.
COVID-19 antibody responses in Children versus Elderly
Age-dependent Ab signatures are observed in COVID-19 patients. SARS-CoV-2-specific IgA and IgG features were associated with increasing age, especially to both Spike 2 (S2) and NP, which could be a result of cross-reactivity driven by prior exposure to human Coronavirus antigens.
PLSDA scores (a) and loadings (b) plots for the children (orange) and elderly(dark blue) with an Elastic-Net-selected 18-feature signature (100.00% calibration accuracy, 91.37% cross-validation accuracy). Hierarchical clustering was performed using the 18-feature signature for the children and elderly cohorts (c)
Selva, K.J., et al., Systems serology detects functionally distinct coronavirus antibody features in children and elderly. Nat Commun, 2021. 12(1): p. 2037
HIV remains a significant cause of morbidity and mortality around the world. The human body produces more IgA than any other immunoglobulin, especially in mucosal secretions. However, the importance of IgA in both protection from HIV-1 and control of HIV-1 disease progression is highly controversial. Results from the only protective human HIV vaccine trial associated plasma IgA with reducedvaccine efficacy. In contrast, recent studies suggest that mucosal HIV-specific IgA may be protective. We are exploring the mechanisms behind both the protective and immunomodulatory role of IgA in the control of HIV-1 and other infectious diseases.
Schematic diagram of immunoglobulin A (IgA) subclasses IgA1 and IgA2, glycosylation patterns and their respective heterogenous molecular forms. In blood and tissue compartments (a) monomeric IgA (mIgA) and to a lesser extent (b) dimeric IgA (dIgA) [two IgA monomer Fc portions connected via a joining (J) chain] are present. dIgA is secreted through epithelial cells via the polymeric immunoglobulin receptor (pIgR) into the mucosal lumen with secretory component (SC) to form (c) secretory IgA (sIgA).
Davis, S. K., et al. (2019). "Serum IgA Fc effector functions in infectious disease and cancer." Immunology and cell biology.
Mycobacterium tuberculosis (Mtb) infects approximately one third of the world’s population and is currently one of the major causes of morbidity and death worldwide. The role of antibodies in Mtb is underexplored, although rare studies suggest that antibodies may contribute to Mtb control. Studies by our lab suggest that patients that can control Mtb (latently infected) have improved functional antibody responses compared to symptomatic (active) Mtb patients. Therefore, we are interested in characterising the antibodies from patients with different clinical Mtb disease outcomes in order to further understand the importance of these potentially protective antibodies.
Spectrum of antibodies in latent to active TB. Latent in comparison to active TB antibody responses.
McLean, M. R., et al. (2019). "An Inflammatory Story: Antibodies in Mycobacterium tuberculosis Co-Morbidities." Front Immunol 10: 2846.
Malaria in pregnancy is responsible for 10,000 maternal deaths and 100,000 still births every year. Pregnant women, despite lifetime malaria exposure, are more susceptible to Plasmodium falciparum infections than their non-pregnant counterparts, due to the ability of parasites to sequester in the placenta by expressing VAR2CSA, a pregnancy-associated P. falciparum erythrocyte membrane protein-1 variant surface antigen. Recent clinical studies have shown an association between the presence of naturally-acquired antibodies to VAR2CSA and protection from placental malaria.
We are investigating the antibody response to VAR2CSA, exploring the functional and structural properties of these Abs in order to identify the mechanisms behind protection, which could provide vital information to guide the rational development of future Ab-based vaccines.
Distribution of antibody features in women with non-placental infection (NPI) and placental malaria (PM).
(A–F) Levels of each of the selected antibody features in individual women in the two groups (G) No single antibody feature was present in all individuals with NPI (or was absent in all those with PM). Errors bars are mean (SD), p-values derived from Welch’s t-test. IE: infected erythrocyte
Aitken et al . Developing a multivariate prediction model of antibody features associated with protection of malaria-infected pregnant women from placental malaria. Elife. 2021 June 29.
Autoimmune diseases, including more than 100 known pathologies with various manifestations, concern 5-8% of the population worldwide and are responsible for an important burden in terms of morbidity, mortality and healthcare costs. Some autoimmune diseases are organ-specific (such as type 1 diabetes) whereas others are systemic (i.e. able to affect any system in the body), but they all have in common the dysregulation of the immune system.
Among the systemic autoimmune diseases, Sjogren’s syndrome is the 2nd most common (0.01-0.3% of the adult population) but still faces unmet diagnostic, therapeutic and follow-up needs. Inflammatory infiltration of the salivary and lacrimal glands responsible for dry eyes and mouth is the main feature of Sjogren’s syndrome, but apart from this classical feature, the clinical spectrum is broad (e.g. rheumatologic, neurologic, bronchiolar, pulmonary, haematological or renal manifestations…).
As all systemic autoimmune diseases, Sjogren’s syndrome has a complex pathophysiology, but what is commonly accepted nowadays, is that B cell activation seems to have a pivotal pathological roleas illustrated by the production of many autoantibodies in patients. Hence, we are interested in deeply characterising the autoreactive humoral response from patients with different phenotypes in order to improve our understanding of the pathological mechanisms at work. We think that these new elements should allow the identification of new biomarkers, therapeutic targets and/or subsets of patients, which will be very useful in addressing the main pitfalls in Sjogren’s syndrome management.
Major Collaborators and Co-supervisors of current graduate students:
Stephen Kent - Dept of Microbiology and Immunology, University of Melbourne, Doherty Institute
Stephen Rogerson- Dept of Medicine- University of Melbourne, Doherty Institute
Australian Collaborators
Keith Chappell, Daniel Watterson, Paul Young- University of Queensland
Nigel Curtis - Murdoch Children's Research Center, University of Melbourne
Laura Downie - Dept of Optometry and Vision Sciences, University of Melbourne
Justin Denholm - Victorian TB Program, Melbourne Health, Doherty Institute
Mark Hogarth - Immune Therapies Group, Burnet Institute
Jennifer Juno - Dept of Microbiology and Immunology, University of Melbourne, Doherty Institute
Katherine Kedzierska -Dept of Microbiology and Immunology, University of Melbourne, Doherty Institute
Anthony Kelleher- Kirby Institute, University of New South Wales
Bao Nguyen - Dept of Optometry and Vision Sciences, University of Melbourne
Nichollas Scott - Dept of Microbiology and Immunology, University of Melbourne, Doherty Institute
Kasha Singh - VIDS, Doherty Institute
Wai Hong Tham- WEHI
Adam Wheatley- Dept of Microbiology and Immunology, University of Melbourne, Doherty Institute
Bruce Wines - Immune Therapies Group, Burnet Institute
International Collaborators
Kelly Arnold- Biomedical Engineering, University of Michigan
Blake Ball - University of Manitoba, National Laboratory for HIV Immunology, National HIV and Retrovirology Laboratories, Public Health Agency of Canada
Nikki Moreland- Molecular Medicine and Pathology, University of Auckland
Shelby O'Connor- Dept of Pathology and Laboratory Medicine, University of Wisconsin-Madison
Sophie Valkenburg - Division of Public Health Laboratory Sciences, University of Hong Kong
Marit van Gils - Dept of Medical Microbiology, Amsterdam UMC