Software

A full list of software can be found here.

MRLR

MRLR is a pipeline to identify meiotic recombination events using trio samples of whole genome 10X Genomics sequencing data. The source code and documentation can be downloaded here. Write to Peng Xu if you have any questions.

novoBreak

novoBreak (Chong et al. 2017) is a tool for structural variations (deletions, duplications, inversions, translocations) detection on Illumina sequencing data. This tool has won several rounds of participated ICGC-TCGA DREAM Mutation Calling Challenge SV Sub-challenge. The source code, binary executable package and documentation can be downloaded here. Write to Zechen Chong if you have any questions.

Rainbow

Rainbow (Chong et al. 2012) is a tool for efficient clustering and assembling RAD-seq reads. The source code and documentation can be downloaded here. Write to Zechen Chong or Jue Ruan if you have any questions.