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CRIC - Center for Recognition and Inspection of Cells
Our team is dedicated to research and development of software tools and organized cell image catalogues through automated cell morphometry and recognition using machine learning. Recent work show advancements on cervical cell analysis of images from SUS (Brazilian Universal Health System), and human brain tissue and cells from Memory and Aging Center at UCSF. Together, we have built analytical and data-driven models using image collections and metadata provided by our collaborators.
Experimental and simulation data allied to high-end computational capabilities for real-time feedback.
Saliency methods and deep learning including public datasets for reproducible research.
Cell database contains digital pictures from conventional Pap smears digitized and classified by UFOP-AMBAR.
Deep learning in cell detection and ranking as in Computerized Medical Imaging and Graphics journal (02/2019)
Cell analysis tools for detection, morphometry and classification using biomedical information.
Featurization
Neurons
High-res multimodal analysis for structural and functional investigation of tissues from UCSF Grinberg's lab.
Principal investigators:
Andrea G. C. Bianchi, Ph.D., Prof, Computing Dept, UFOP
Cláudia M. Carneiro, Ph.D., Prof, Pathology Dept , UFOP
Daniela M. Ushizima, Ph.D., Computational Research, Berkeley Lab e UC Berkeley
Fatima N. S. de Medeiros, Ph.D., Prof, Engineering Dept, UFC
Collaborating researchers and/or former students:
Alan Magalhaes Braga, M.Sc., UFC
Alessandra Gomes, Ph.D., Cytology/Pathology, UFOP
Alexander Ehrenberg, Ph.D. candidate, UC Berkeley
Daniel Silva Ferreira, M.Sc., Prof, IFCE
Flávio Henrique Duarte de Araújo, Ph.D., Prof, CS, UFPI
Geraldo Luis Bezerra Ramalho, Ph.D., Prof, IFCE
Jeova Farias Rocha Neto, M.Sc., Brown University
José Gerardo Fonteles Lopes, UFC
Lea Grinberg, MD Ph.D, Prof., Memory and Aging Center, UCSF
Mariana Alegro, PhD, UCSF
Mariana Trevisan Rezende, M.Sc., UFOP
Marcelo Marques Simões de Souza, Ph.D., Prof, UFC
Paulo Henrique Calaes Oliveira, M.Sc., CS, UFOP
Regis Cristiano Pinheiro Marquez, Ph.D., Prof, IFCE
Romuere Rodrigues Veloso e Silva, Ph.D., Prof, CS, UFPI
Silvia Miramontes-Lizarraga, UC Berkeley
Tales Mota Machado, M.Sc., UFOP
Debora Nasser, UFOP
Fagner Bernardo Oliveira, UFOP
Douglas Isidoro Wender , UFOP
Camila Tropia, UFOP
Guilherme Souza Monteiro, UFOP
Natália Sol, UFOP
Support:
Brasil: CAPES, CNPQ, Science without Borders, FAPEMIG, PPSUS,
USA: BIDS, Moore-Sloan Foundation
CRIC'21 - hack real cells @ Ether: TBA.
camCBIR v.0.1 @ Berkeley: Jan 10th, 2020.
pyCBIR v.0.3 @ University of California Berkeley: Nov 7th, 2019.
cell-meeting @ Federal University of Ceara: Dec 19th, 2018.
ImageXD @ University of California Berkeley: May 16th, 2018.
CRIC'17 @ Federal University of Ouro Preto: Nov 6th, 2017.
cell-meeting @ Federal University of Ceara: June 24th, 2017.