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Unique Role of Med8 in Ace2 Recruitment and Target Gene Expression in Schizosaccharomyces pombe
J. Microbiol. Biotechnol. 2025 Oct 15; doi: 10.4014/jmb.2507.07055
Ji-Hyun Kim and Kyoung-Dong Kim
Metal ion homeostasis regulates condensin-dependent chromatin architecture and chromosome segregation in Schizosaccharomyces pombe
Journal of Microbiology 2025 Aug 29; doi.org/10.71150/jm.2505008
Acetic acid produced by Staphylococcus epidermidis remodels chromatin architecture and suppresses gene expression in Malassezia restricta
Acetic acid produced by Staphylococcus epidermidis remodels chromatin architecture and suppresses gene expression in Malassezia restricta
mBio 2025 Sep 12; doi.org/10.1128/mbio.01592-25
Jae Min Lee, Hyun Oh Yang, Hideki Tanizawa, Ken-Ichi Noma, Tae Kwon Lee, Won Hee Jung, Yong-Joon Cho, Kyoung-Dong Kim
Advances in Foamy Virus Vector Systems: Development and Applications
Advances in Foamy Virus Vector Systems: Development and Applications
Soo-Yeon Cho, Kyoung-Dong Kim, Cha-Gyun Shin
Multifunctional and endogenous stimuli-responsive vinblastine sulfate/manganese dioxide nanodrugs for enhancing chemotherapeutic efficacy against hypoxic tumors
Multifunctional and endogenous stimuli-responsive vinblastine sulfate/manganese dioxide nanodrugs for enhancing chemotherapeutic efficacy against hypoxic tumors
Yong Geun Lim , Yeji Chang , Seon-Ju Park , Kyoung-Dong Kim , Kyeongsoon Park
Non-Mitochondrial Aconitase-2 Mediates the Transcription of Nuclear-Encoded Electron Transport Chain Genes in Fission Yeast
Non-Mitochondrial Aconitase-2 Mediates the Transcription of Nuclear-Encoded Electron Transport Chain Genes in Fission Yeast
J Microbiol 2024 Aug;62(8):639-648. doi: 10.1007/s12275-024-00147-8.
Ho-Jung Kim , Soo-Yeon Cho, Soo-Jin Jung, Yong-Jun Cho, Jung-Hye Roe, Kyoung-Dong Kim
Viral remodeling of the 4D nucleome
Viral remodeling of the 4D nucleome
Exp Mol Med 2024 Apr;56(4):799-808. doi: 10.1038/s12276-024-01207-0.
J Microbiol Biotechnol 2024 Apr 28;34(4):804-811. doi: 10.4014/jmb.2312.12026. Epub 2024 Feb 15.
Soo-Yeon Cho, Yoon Jae Lee, Seong-Mook Jung, Young Min Son, Cha-Gyun Shin, Eui Tae Kim, Kyoung-Dong Kim
Single-cell phenotypes revealed as a key biomarker in bacterial–fungal interactions: a case study of Staphylococcus and Malassezia
Single-cell phenotypes revealed as a key biomarker in bacterial–fungal interactions: a case study of Staphylococcus and Malassezia
Microbiology Spectrum 2023 Nov 1; doi: 10.1128/spectrum.00437-23. Epub 2023 Nov 1.
Eun Sun Lyou , Min Sung Kim , Soo Bin Kim , MinJi Park, Kyong-Dong Kim, Won Hee Jung, Tae Kwon Lee
Chromatin accessibility analysis and architectural profiling of human kidneys reveal key cell types and a regulator of diabetic kidney disease
Chromatin accessibility analysis and architectural profiling of human kidneys reveal key cell types and a regulator of diabetic kidney disease
Kidney Int 2024 Jan:S0085-2538(23)00757-3. doi: 10.1016/j.kint.2023.09.030.
Minho Eun , Donggun Kim, So-I Shin, Hyun Oh Yang, Kyoung-Dong Kim, Sin Young Choi, Sehoon Park, Dong Ki Kim, Chang Wook Jeong, Kyung Chul Moon, Hajeong Lee, Jihwan Park
DOI: 10.1016/j.kint.2023.09.030
Transcriptional Interplay between Malassezia restricta and Staphylococcus Species Co-Existing in the Skin Environment
Transcriptional Interplay between Malassezia restricta and Staphylococcus Species Co-Existing in the Skin Environment
J. Microbiol. Biotechnol. 2023; 33(3): 319-328
Published March 28, 2023
Hyun Oh Yang, Yong-Joon Cho, Jae Min Lee, and Kyoung-Dong Kim
Characterization of a new CCCTC-binding factor binding site as a dual regulator of Epstein-Barr virus latent infection
Characterization of a new CCCTC-binding factor binding site as a dual regulator of Epstein-Barr virus latent infection
PLoS Pathog. 2023 Jan; 19(1): e1011078.
Lee SH*, Kim K-D*, Cho M, Huh S, An SH, Seo D, et al. (*: co-first author)
https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011078#ppat-1011078-g001
4C Analysis of EBV-Host DNA Interactome
4C Analysis of EBV-Host DNA Interactome
Methods Mol Biol. 2023 Jan;2610:99-107. doi: 10.1007/978-1-0716-2895-9_9.
Kyoung-Dong Kim, Paul M Lieberman
https://link.springer.com/protocol/10.1007/978-1-0716-2895-9_9
Topological implications of DNA tumor viral episomes
Topological implications of DNA tumor viral episomes
BMB Rep. 2022 Dec;55(12):587-594. doi: 10.5483/BMBRep.2022.55.12.154.
https://www.bmbreports.org/journal/view.html?volume=55&number=12&spage=587
Non-mitochondrial aconitase regulates the expression of iron-uptake genes by controlling the RNA turnover process in fission yeast
Non-mitochondrial aconitase regulates the expression of iron-uptake genes by controlling the RNA turnover process in fission yeast
J Microbiol. 2021 Dec;59(12):1075-1082. doi: 10.1007/s12275-021-1438-4. Epub 2021 Oct 26.
Cho SY, Jung SJ, Kim KD*, Roe JH* (*: corresponding author)
https://link.springer.com/article/10.1007%2Fs12275-021-1438-4
Potential roles of condensin in genome organization and beyond in fission yeast
Potential roles of condensin in genome organization and beyond in fission yeast
J Microbiol 2021 May;59(5):449-459. doi: 10.1007/s12275-021-1039-2. Epub 2021 Apr 20.
Kim KD
https://link.springer.com/article/10.1007%2Fs12275-021-1039-2
Epigenetic specifications of host chromosome docking sites for latent Epstein-Barr virus
Epigenetic specifications of host chromosome docking sites for latent Epstein-Barr virus
Nat Commun. 2020 Feb 13;11(1):877. doi: 10.1038/s41467-019-14152-8.
Kim KD, Tanizawa H, De Leo A, Vladimirova O, Kossenkov A, Lu F, Showe LC, Noma KI, Lieberman PM.
Involvement of condensin in cellular senescence through gene regulation and compartmental reorganization.
Involvement of condensin in cellular senescence through gene regulation and compartmental reorganization.
Nat Commun. 2019 Dec 12;10(1):5688. doi: 10.1038/s41467-019-13604-5.
Iwasaki O, Tanizawa H, Kim KD, Kossenkov A, Nacarelli T, Tashiro S, Majumdar S, Showe LC, Zhang R, Noma KI.
The Wistar Institute, PA
Before CAU
Before CAU
1. Hideki Tanizawa, Kyoung-Dong Kim, Osamu Iwasaki, and Ken-ichi Noma (2017)
Architectural alterations of the fission yeast genome during the cell cycle.
Nat. Struct. Mol. Biol., 24(11): 965-976
2. Kyoung-Dong Kim*, Hideki Tanizawa*, Osamu Iwasaki, and Ken-ichi Noma (2016)
Transcription factors mediate condensin recruitment and global chromosomal organization in fission yeast.
Nat. Genet., 48(10): 1242-1252 (*: co-first author)
3. Hyo-Jin Kim, Kang-Lok Lee, Kyoung-Dong Kim, and Jung-Hye Roe (2016) The Iron uptake repressor Fep1 in the fission yeast binds Fe-S cluster through conserved cysteines.
Biochem Biophys Res Commun. 478 (1):187-192
4. Kyoung-Dong Kim, Osamu Iwasaki, and Ken-ichi Noma (2016) An IF-FISH approach for covisualization of gene loci and nuclear architecture in fission yeast.
Methods Enzymol. 574:167-80
5. Osamu Iwasaki, Hideki Tanizawa, Kyoung-Dong Kim, Yuhki Yokoyama, Christopher J. Corcoran, Atsunari Tanaka, Emmanuel Skordalakes, Louise C. Showe, and Ken-ichi Noma (2015) Interaction between TBP and condensin drives the organization and faithful segregation of mitotic chromosomes.
Mol Cell. 59:755-67
6. Kyoung-Dong Kim, Hideki Tanizawa, Osamu Iwasaki, Christopher J. Corcoran, Joseph R. Capizzi, James E. Hayden, and Ken-ichi Noma (2013) Centromeric motion facilitates the mobility of interphase genomic regions in fission yeast.
J Cell Sci.126:5271-83.
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