Links

Pombe Specific Sites and Tools

• Start with Pombase, your source for the pombe genome.

• Jürg Bahler's resource page for transcript profiles, PCR primer programs, and more

• Genome statistics

• The Sanger Institute pombe genome sequencing project.

• Using the GO terminology to access the pombe genome sequencing project through Amigo

• Map viewer from NCBI. This is a great site that provides graphic clone maps and genetic and chromosome maps.

• Pfam identifies protein family motifs

• Predicted function using Amigo. Also for functional classification searches. Categories agree with the Gene Ontology Consortium.

• Gene name or keyword search through GeneDB. This is the best way to find your gene or class of interest. Use this Boolean query tool for more advanced searches of GeneDB.

• View cosmids with Artemis tool

• Protein motif search

• eMowse will search the chosen protein sequence database with protein fragment information and return the protein(s) which most likely correspond to your peptide data

• Species distribution of domains: Go to the Pfam webpage, choose the 'BROWSE PFAM' option, select a domain, and then ask to see the species distribution

• Chromosome I status and cosmids

• Chromosome II status and cosmids

• Chromosome III status and cosmids

• Functional genomics at the Sanger Institute--DNA microarrays!

• Check out the recently released S. japonicus sequence