Project modules for BIC:

1.  An introduction to sequencing technology and output data types. Basics of library constructions. Quality Control of sequenced data and data cleaning for genomic and Metagenomic DNA.

2.  Genome assembly using Snakemake pipeline

3.  Computational genomics: gene prediction, pattern searching, profile/motif based searching

4.  Basic statistics using R

5.  Genome browsing with jbrowse.  

6.  Introduction to the Galaxy suite of tools 

7.  Differential expression analysis using RNAseq technology in galaxy.

8.  Metagenomic data analysis for understanding biological diversity using In-house pipeline. 

Project modules for NNP:

The project focuses on three core modules:

1.  Gene prediction

2.  Annotation of genomes

3.  Effector prediction (pathogens).

These modules will be applied across Cyanobacteria, Fungi, Oomycetes, and Trees.