Publications:
(2026)
Chairattanawat, C., Kang, J., Kim, J.* and Choi, B.Y.*, 2026. Complete Chloroplast Genome of Pyrola japonica: Characterization and Phylogenetic Analysis. PHYTON-INTERNATIONAL JOURNAL OF EXPERIMENTAL BOTANY.
Roh, Y., Choi, B.Y. and Yamaoka, Y., 2026. Conserved and divergent mechanisms by which endoplasmic reticulum stress reprograms lipid metabolism in microalgae. Journal of Experimental Botany, p.erag281.
Choi, B.Y., Jang, S., Je, S., Kim, J., Kang, H., Choi, J., Shin, W., Park, S., Kim, J., Yamaoka, Y. and Shim, D., 2025. Genome and transcriptome analyses uncover the mechanism of polyunsaturated fatty acid (PUFA) biosynthesis in a high PUFA mutant of Schizochytrium sp. BPL. Aquaculture, p.743533.
Choi, B.Y., Bae, E., Jo, I.H. and Kim, J., 2026. Machine Learning Assessment of the Environmental Factors Contributing to Shade Adaptation in Brassica juncea. Plants, 15(5), p.780.
(2025)
Roh, Y., Choi, B.Y. and Yamaoka, Y., 2026. Conserved and divergent mechanisms by which endoplasmic reticulum stress reprograms lipid metabolism in microalgae. Journal of Experimental Botany, p.erag281.
Park, H., Bae, E., Jung, J.G., Kim, J., Choi, B.Y., Lee, G., Kim, C. and Shim, D., 2025. Chromosome‐level genome of Zoysia sinica in the intertidal zone reveals genomic insights into waterlogging stress adaptation. The Plant Genome, 18(3), p.e70070.
Jung, K., Jo, I.H., Choi, B.Y. and Kim, J., 2025. Structure-Based pipeline for plant enzymes: Pilot study identifying novel ginsenoside biosynthetic UGTs. BioTech, 14(3), p.73.
Park, H., Bae, E., Jung, J.G., Choi, B.Y., Lee, T.H. and Shim, D., 2025. Chromosome-level Genome assembly of the Halophytic turfgrass Zoysia macrostachya. Scientific data, 12(1), p.1335.
Park, S., Choi, B.Y., Seol, Y.B. and Kim, J., 2025. Low-temperature plasma modulates seed germination through reactive oxygen species in dose-dependent manner. Free radical research, 59(6-7), pp.545-556.
Choi, B.Y. and Kim, J., 2025. Discovery of Targetable Epitopes in Tomato Chlorosis Virus Through Comparative Genomics and Structural Modeling. Sci, 7(3), p.88.
Kim, J., Choi, B.Y., Shim, D. and Jo, I.H., 2025. Complex transcriptome network regulates the anthocyanin accumulation of four Panax ginseng cultivars in fruit. Journal of Ginseng Research, 49(3), pp.315-325.
(2024)
Choi, B.Y., Seol, Y. and Kim, J., 2024. Axillary root development triggered by cold plasma treatment. Journal of Plant Biotechnology, 51(1), pp.273-277.
Choi, B.Y.*, Kim, J.*, Park, H., Kim, J., Han, S., Jo, I.H. and Shim, D., 2024. De Novo Genome Assembly and Phylogenetic Analysis of Cirsium nipponicum. Genes, 15(10), p.1269.
Yum, S.Y.*, Choi, B.Y.*, Gim, G.M., Eom, K.H., Lee, S.B., Kim, D., Lim, E., Kim, D.Y., Heo, S.E., Shim, D. and Jang, G., 2024. Long-term (10-year) monitoring of transposon-mediated transgenic cattle. Transgenic Research, pp.1-10.
Kim, J.*, Park, Y.*, Moon, S., Seo, J.A., Moon, J., Park, H., Choi, B.Y., Raveendar, S., Kim, C.W., Chung, J.W. and Shim, D., 2024. A comprehensive analysis integrating phenotypic assessment uncovering thornless cultivar lineages in Aralia elata. Genomics, 116(3), p.110824.
Lee, I.H.*, Choi, B.Y.*, Kim, D.S., Han, H., Kim, Y.H. and Shim, D., 2024. Temporal transcriptome profiling of Pinus densiflora infected with pine wood nematode reveals genetically programmed changes upon pine wilt disease. Phytopathology®, 114(5), pp.982-989.
(2023)
Choi, B.Y., Park, H., Kim, J., Wang, S., Lee, J., Lee, Y. and Shim, D., 2023. BLZ8 activates a plastidial peroxiredoxin and a ferredoxin to protect Chlamydomonas reinhardtii against oxidative stress. Plant Biology, 25(6), pp.915-923.
Je, S., Choi, B.Y., Kim, E., Kim, K., Lee, Y. and Yamaoka, Y., 2023. Sterol Biosynthesis Contributes to Brefeldin-A-Induced Endoplasmic Reticulum Stress Resistance in Chlamydomonas reinhardtii. Plant and Cell Physiology, p.pcad131.
(2022)
Choi, B.Y., Lee, S., Kim, J., Park, H., Kim, J.H., Kim, M., Park, S.J., Kim, K.T., Ryu, H. and Shim, D., 2022. Comparison of endophytic and epiphytic microbial communities in surviving and dead korean fir (abies koreana) using metagenomic sequencing. Forests 13: 1932.
Choi, B.Y., Shim, D., Kong, F., Auroy, P., Lee, Y., Li‐Beisson, Y., Lee, Y. and Yamaoka, Y., 2022. The Chlamydomonas transcription factor MYB1 mediates lipid accumulation under nitrogen depletion. New Phytologist, 235(2), pp.595-610.
Kim, K., Choi, B.Y., Kang, J., Shim, D., Martinoia, E. and Lee, Y., 2022. Arabidopsis ABCG27 plays an essential role in flower and leaf development by modulating abscisic acid content. Physiologia Plantarum, 174(3), p.e13734.
Choi, B.Y.*, Kim, H.*, Shim, D., Jang, S., Yamaoka, Y., Shin, S., Yamano, T., Kajikawa, M., Jin, E., Fukuzawa, H. and Lee, Y., 2022. The Chlamydomonas bZIP transcription factor BLZ8 confers oxidative stress tolerance by inducing the carbon-concentrating mechanism. The Plant Cell, 34(2), pp.910-926.
(2021)
Cho, C.H.*, Jang, S.*, Choi, B.Y.*, Hong, D., Choi, D.S., Choi, S., Kim, H., Han, S.K., Kim, S., Kim, M.S. and Palmgren, M., 2021. Phylogenetic analysis of ABCG subfamily proteins in plants: functional clustering and coevolution with ABCGs of pathogens. Physiologia Plantarum, 172(3), pp.1422-1438.
(2020)
Jang, S.*, Kong, F.*, Lee, J.*, Choi, B.Y., Wang, P., Gao, P., Yamano, T., Fukuzawa, H., Kang, B.H. and Lee, Y., 2020. CrABCA2 facilitates triacylglycerol accumulation in Chlamydomonas reinhardtii under nitrogen starvation. Molecules and cells, 43(1), pp.48-57.
(2019)
Yamaoka, Y., Shin, S., Choi, B.Y., Kim, H., Jang, S., Kajikawa, M., Yamano, T., Kong, F., Légeret, B., Fukuzawa, H. and Li-Beisson, Y., 2019. The bZIP1 transcription factor regulates lipid remodeling and contributes to ER stress management in Chlamydomonas reinhardtii. The Plant Cell, 31(5), pp.1127-1140.
(2018)
Yamaoka, Y., Choi, B.Y., Kim, H., Shin, S., Kim, Y., Jang, S., Song, W.Y., Cho, C.H., Yoon, H.S., Kohno, K. and Lee, Y., 2018. Identification and functional study of the endoplasmic reticulum stress sensor IRE 1 in Chlamydomonas reinhardtii. The Plant Journal, 94(1), pp.91-104.
(2015)
Kim, S.M.*, Choi, B.Y.*, Ryu, Y.S., Jung, S.H., Park, J.M., Kim, G.H. and Lee, S.K., 2015. Simultaneous utilization of glucose and xylose via novel mechanisms in engineered Escherichia coli. Metabolic engineering, 30, pp.141-148.
Books:
이영숙, 최배영. (2026). 피소니아 나무는 왜 새를 죽일까?. 나무를심는사람들.
Youngsook Lee and Bae Young Choi. (2025). Social Lives of Plants: How plants connect—as friends or foes—with other plants, microorganisms, animals, and humans. Springer Nature. https://doi.org/10.1007/978-981-96-9837-0
Youngsook Lee and Bae Young Choi. (2024). The Social Lives of Plants (식물의 사회생활, Written in Korean). EAST-ASIA Publishing Co., Seoul, Korea, ISBN 9788962620559
Patents:
Sung Kuk Lee, Goo Hee Kim, Seong Hun Jeong, Suk Min Kim, and Bae Young Choi. 07/12/2019. Method for preparing mutant Escherichia coli capable of simultaneously utilizing glucose and xylose. CN Patent No. ZL 201410389340.8
Sung Kuk Lee, Goohee Kim, Seong Hun Jeong, Suk Min Kim, and Bae Young Choi. 03/15/2016 ~ 07/02/2034. Method for preparing mutant Escherichia coli capable of simultaneously utilizing glucose and xylose. US Patent No. 9,284,582