Bonilla Lab at University of San Diego
@DrCarlaBonilla
@DrCarlaBonilla
I am interested in bacterial genetics and promoting inclusive science classrooms. My lab studies the Gram positive bacterium Bacillus subtilis and its responses to environmental stressors. I also study the implementation of critical pedagogy in STEM education specifically in the college classroom using a social justice lens to promote critical consciousness.
My name is Carla Bonilla and I am Associate Professor at the University of San Diego in the Biology Department. I have over ten years of faculty experience, teaching molecular biology and genetics at Gonzaga University and now teaching microbiology at USD. I am interested in all things molecular biology and love teaching students the power of bacterial genetics to answer cool biological questions.
I believe strongly in the power of mentoring and try to be a collaborative and supportive mentor with my research students. The support I received during my training is the reason I am a faculty member now. Read more about my mentoring story here.
B. subtilis senses environmental, oxidative and nutritional stress in order to activate the general stress response through SigB. The stressosome complex made up of sensor proteins, a regulator and a kinase transduce environmental stress and are all involved in the activation of SigB. Upon exposure to stress, the kinase is released from the complex and activates a signaling cascade that ultimately releases SigB from its anti-sigma factor RsbW. Once free, SigB can activate gene expression. One outcome of activating the stress reponse is cross-protection against subsequent related and unrelated stresses. The goal of this project is to dissect the cellular and molecular roles of those oxidative stress-induced genes during environmental stress cross protection.
SigB-regulated antioxidant functions in gram positive bacteria
Generally Stressed Out Bacteria: Environmental Stress Response Mechanisms in Gram-Positive Bacteria
The low molecular weight thiol, bacillithiol (BSH) has important roles in toxin and ROS detoxification in Gram positive bacteria. In pathogens such as Staphylococcus aureus, it is also involved in virulence. The synthesis of bacillithiol was characterized in 2010 and to date only a few of the dozen B. subtilis enzymes predicted in bacillithiol biochemistry have been studied. Understanding the molecular mechanisms of these proteins will give us insight in the synthesis, utilization, recycling and ultimately homeostasis of this major antioxidant. This project seeks to understand the role of BSH in protection against antibiotics and plant derived compounds.
Critical pedagogy was pioneered by the Brazilian educator Paulo Freire advocating for education that empowers students from marginalized communities to be critical creators of knowledge that challenge oppressive systems by practicing critical consciousness. My work aims to integrate critical pedagogy and critical consciousness in the classroom so students can question the role science has played in creating inequitable environments in society, ultimately imagining a more just world through science education.
Cultivating an Equity-Focused Classroom
From Classrooms to Labs: Social Equity in Microbiology
Feminist Biology: Towards Gender Equity in the Biology Curriculum
I am a member of the Microbes and Social Equity working group. We are a transdisciplinary group of scholars and practitioners that promote the connections between microbes and every aspect of human and planetary health. We aim to integrate multiple disciplinary fields and research methods to advocate for policy and pedagogy that centers social equity through microbes.
Postdoctoral Scholar, Biology Department, Massachusetts Institute of Technology, 2008-2012
Ph. D., Cell Biology, University of California, San Francisco, 2002-2008
Masters in Biology, San Francisco State University, 2000-2002
Bachelors of Arts, Molecular and Cell Biology, Minor in Education, University of California, Berkeley, 2000
I have always worked on stress responses in microbes from the ECF sigma factor SigY and regulation of replication initiation in Bacillus subtilis, to the DNA damage stress response in yeast. This work allowed me to hone techniques that I teach to undergraduate students in my lab. Additionally, I've taught authentic research experiences in introductory courses leading to co-authorship with undergraduate students through SEA-PHAGES.
Complicated tails: histone modifications and the DNA damage response
Regulation of the Bacillus subtilis Extracytoplasmic Function Protein σY and Its Target Promoters