研究成果

《 論文等 》

• Saito S, Nishihara M, Kohakura M, Kimura K, Yashiro T, Takasawa S, Arimura GI. Metabolic engineering of betacyanin in vegetables for anti-inflammatory therapy. Biotechnol Bioeng. 120:1357–1365, 2023

• Desaki Y, Morishima M, Sano Y, Uemura T, Ito A, Nemoto K, Nozawa A, Sawasaki T, Arimura GI. Cytoplasmic kinase network mediates defense response to Spodoptera litura in Arabidopsis. Plants (Basel) 12:1747, 2023

• Kawaguchi J, Hayashi K, Desaki Y, Ramadan A, Nozawa A, Nemoto K, Sawasaki T, Arimura GI. JUL1, ring-type E3 ubiquitin ligase, is involved in transcriptional reprogramming for ERF15-mediated gene regulation. Int J Mol Sci. 24:987, 2023

• Onosato H, Fujimoto G, Higami T, Sakamoto T, Yamada A, Suzuki T, Ozawa R, Matsunaga S, Seki M, Ueda M, Sako K, Galis I, Arimura GI. Sustained defense response via volatile signaling and its epigenetic transcriptional regulation. Plant Physiol. 189:922–933, 2022

• Shimizu K, Suzuki H, Uemura T, Nozawa A, Desaki Y, Hoshino R, Yoshida A, Abe H, Nishiyama M, Nishiyama C, Sawasaki T, Arimura GI. Immune gene activation by NPR and TGA transcriptional regulators in the model monocot Brachypodium distachyon. Plant J. 110:470–481, 2022

• Tsuzuki C, Hachisu M, Iwabe R, Nakayama Y, Nonaga Y, Sukegawa S, Horito S, Arimura GI. An amino acid ester of menthol elicits defense responses in plants. Plant Molecular Biology, iPlant Mol Biol.109:523–531, 2022

• Morita M, Yamasaki Y, Shinya T, Galis I, Arimura GI. Phytohormone elicitation in maize by oral secretions of specialist Mythimna separata and generalist Spodoptera litura. J Plant Interact, 16:587–590, 2021

• Yamasaki Y, Sumioka H, Takiguchi M, Uemura T, Kihara Y, Shinya T, Galis I, Arimura GI. Phytohormone-dependent plant defense signaling orchestrated by oral bacteria of the herbivore Spodoptera litura. New Phytologist, 231:2029–2038, 2021

• Arimura G. Making sense of the way plants sense herbivores.Trends in Plant Science, 26:288-298, 2021

• Uemura T, Hachisu M, Desaki Y, Ito A, Hoshino R, SanoY, NozawaA, Mujiono K, Galis I, Yoshida A, NemotoK, Miura S, Nishiyama M, Nishiyama C, Horito S, Sawasaki T, Arimura G. Soy and Arabidopsis receptor-like kinases respond to polysaccharide signals from Spodopteraspecies and mediate herbivore resistance. Commun Biol. 3:224, 2020

• Takafuji K, Rim H, Kawauchi K, Mujiono K, Shimokawa S, Ando Y, Shiojiri K, Galis I, Arimura G. Evidence that ERF transcriptional regulators serve as possible key molecules for natural variation in defense against herbivores in tall goldenrod.  Sci Rep. 10:5352, 2020

• Rim H, Hattori S, Arimura G. Mint companion plants enhance the attraction of the generalist predatorNesidiocoris tenuis according to its experiencesof conspecific mint volatiles. Sci Rep. 10:2078, 2020

• 有村源一郎. キャンディミントはタバコカスミカメの食欲を倍増させる. 現代農業 884:208-209, 2020

• 有村源一郎, 宮永正斗, 八須匡和. 植物香気成分とテルペン誘導体の免疫活性化機能. Bio Industry 37:10-16, 2020

《 新聞・雑誌報道 , シンポジウム発表 , アウトリーチ活動 》

• 2020年6月30日 Gizmodo: Is plant ‘intelligence’ just a human fantasy?  

• 2020年2月17日 センシング技術コンソーシアム第30回講演会(名古屋) にて発表

• 2020年2月14日 日本農業新聞(朝刊)掲載 ミントの香りで誘引タバコカスミカメ害虫捕食を増進

• 2020年2月13日 化学工業日報(朝刊)掲載 ミント香気で益虫誘引環境保全型農業に活用

《 論文等 》

• Kaneko H, Miyata F, Kurokawa M, Hashimoto K, Kuchitsu K, Furuya T. Diversity and characteristics of plant immunity-activating bacteria from Brassicaceae plants. BMC Microbiol. 23:175, 2023

• Nickolov K, Gauthier A, Hashimoto K, Laitinen T, Väisänen E, Paasela T, Soliymani R, Kurusu T, Himanen K, Blokhina O, Fagerstedt KV, Jokipii-Lukkari S, Tuominen H, Häggman H, Wingsle G, Teeri TH, Kuchitsu K, Kärkönen A. Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca2+ binding and phosphorylation. Front Plant Sci. 13:978586, 2022

• Hashimoto K, Koselski M, Tsuboyama S, Dziubinska H, Trębacz K, Kuchitsu K. Functional Analyses of the Two Distinctive Types of Two-Pore Channels and the Slow Vacuolar Channel in Marchantia polymorpha. Plant Cell Physiol. 63:163–175, 2022

• Kaneko T, Kato H, Yamada H, Yamamoto M, Yoshida T, Attri P, Koga K, Murakami T, Kuchitsu K, Ando S, Nishikawa Y, Tomita K, Ono R, Ito T, Ito AM, Eriguchi K, Nozaki T, Tsutsumi T, Ishikawa K. Functional nitrogen science based on plasma processing: Quantum devices, photocatalysts and activation of plant defense and immune systems. Jpn J Appl Phys. 61:SA0805, 2022

• Mizoi K, Rodríguez-González V, Sasaki M, Suzuki S, Honda K, Ishida N, Suzuki N, Kuchitsu K, Kondo T, Yuasa M, Fujishima A, Teshima K, Terashima C. Interactions between pH, reactive species, and cells in plasma-activated water can remove algae. RSC Adv. 12:7626–7634, 2022

• Kimura S, Kaya H, Hashimoto K, Wrzaczek M, Kuchitsu K. Quantitative Analysis for ROS-Producing Activity and Regulation of Plant NADPH Oxidases in HEK293T Cells. Methods Mol Biol. 2526:107–122, 2022

• Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T. An efficient direct screening system for microorganisms that activate plant immune responses based on plant–microbe interactions using cultured plant cells. Sci Rep. 11:7396, 2021

• Klionsky DJ, Kuchitsu K, et al., Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 17:1–382, 2021

• Iwasaki M, Kajiwara T, Yasui Y, Yoshitake Y, Miyazaki M, Kawamura S, Suetsugu N, Nishihama R, Yamaoka S, Wanke D, Hashimoto K, Kuchitsu K, Montgomery SA, Singh S, Tanizawa Y, Yagura M, Mochizuki T, Sakamoto M, Nakamura Y, Liu C, Berger F, Yamato KT, Bowman JL, Kohchi T. Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system. Curr Biol. 31:5522–5532.e7, 2021

• Koselski M, Pupkis V, Hashimoto K, Lapeikaite I, Hanaka A, Wasko P, Plukaite E, Kuchitsu K, Kisnieriene V, Trebacz K. Impact of mammalian two-pore channel inhibitors on long-distance electrical signals in the characean macroalga nitellopsis obtusa and the early terrestrial liverwort marchantia polymorpha. Plants. 10:647, 2021

• Iino T, Hashimoto K, Asai T, Kuchitsu K, Ozeki Y. Multicolour chemical imaging of plant tissues with hyperspectral stimulated Raman scattering microscopy. Analyst. 146:1234–1238, 2021

• Yokoyama M, Yamashita T, Kaida R, Seo S, Tanaka K, Abe S, Nakano M, Fujii Y, Kuchitsu K. Ultrafine bubble water mitigates plant growth in damaged soil. Biosci Biotechnol Biochem. 85:2466–2475, 2021

• Akita K, Takagi T, Kobayashi K, Kuchitsu K, Kuroiwa T, Nagata N. Ultrastructural characterization of microlipophagy induced by the interaction of vacuoles and lipid bodies around generative and sperm cells in Arabidopsis pollen. Protoplasma. 258:129–138, 2021

• Hanamata S, Kurusu T, Kuchitsu K. Cell cycle-dependence of autophagic activity and inhibition of autophagosome formation at m phase in tobacco by-2 cells. Int J Mol Sci. 21:9166, 2020

• Hanamata S, Sawada J, Ono S, Ogawa K, Fukunaga T, Nonomura KI, Kimura S, Kurusu T, Kuchitsu K. Impact of autophagy on gene expression and tapetal programmed cell death during pollen development in rice. Front Plant Sci. 11:172, 2020

《 論文等 》

《 論文等 》2021〜

• Moriya KC, Shirakawa M, Loue-Manifel J, Matsuda Y, Lu YT, Tamura K, Oka Y, Matsushita T, Hara-Nishimura I, Ingram G, Nishihama R, Goodrich J, Kohchi T, Shimada T. Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha. Nat Plants. 9:302-314, 2023

• Suzuki H, Kato H, Iwano M, Nishihama R, Kohchi T. Auxin signaling is essential for organogenesis but not for cell survival in the liverwort Marchantia polymorpha. Plant Cell. 35:1058-1075, 2023

• Aki SS, Morimoto T, Ohnishi T, Oda A, Kato H, Ishizaki K, Nishihama R, Kohchi T, Umeda M. R2R3-MYB transcription factor GEMMA CUP-ASSOCIATED MYB1 mediates the cytokinin signal to achieve proper organ development in Marchantia polymorpha. Sci Rep. 12:21123, 2022

• Kawamura S, Romani F, Yagura M, Mochizuki T, Sakamoto M, Yamaoka S, Nishihama R, Nakamura Y, Yamato KT, Bowman JL, Kohchi T, Tanizawa Y. MarpolBase Expression: A web-based, comprehensive platform for visualization and analysis of transcriptomes in the Liverwort Marchantia polymorpha. Plant Cell Physiol. 63:1745-1755, 2022

• Kanazawa T, Nishihama R, Ueda T. Normal oil body formation in Marchantia polymorpha requires functional coat protein complex I proteins. Front Plant Sci. 13:979066, 2022

• Bowman JL, Arteaga-Vazquez M, Berger F, Briginshaw LN, Carella P, Aguilar- Cruz A, Davies KM, Dierschke T, Dolan L, Dorantes-Acosta AE, Fisher TJ, Flores- Sandoval E, Futagami K, Ishizaki K, Jibran R, Kanazawa T, Kato H, Kohchi T, Levins J, Lin SS, Nakagami H, Nishihama R, Romani F, Schornack S, Tanizawa Y, Tsuzuki M, Ueda T, Watanabe Y, Yamato KT, Zachgo S. The renaissance and enlightenment of Marchantia as a model system. Plant Cell. 34:3512-3542, 2022

• Koeduka T, Takaishi M, Suzuki M, Nishihama R, Kohchi T, Uefune M, Matsui K. CRISPR/Cas9-mediated disruption of ALLENE OXIDE SYNTHASE results in defective 12-oxo-phytodienoic acid accumulation and reduced defense against spider mite (Tetranychus urticae) in liverwort (Marchantia polymorpha). Plant Biotechnol (Tokyo). 39:191-194, 2022

• Shinkawa H, Kajikawa M, Furuya T, Nishihama R, Tsukaya H, Kohchi T, Fukuzawa H. Protein Kinase MpYAK1 is involved in meristematic cell proliferation, reproductive phase change and nutrient signaling in the Liverwort Marchantia polymorpha. Plant Cell Physiol. 63:1063-1077, 2022

• Ishida S, Suzuki H, Iwaki A, Kawamura S, Yamaoka S, Kojima M, Takebayashi Y, Yamaguchi K, Shigenobu S, Sakakibara H, Kohchi T, Nishihama R. Diminished auxin signaling triggers cellular reprogramming by inducing a regeneration factor in the liverwort Marchantia polymorpha. Plant Cell Physiol. 63:384–400, 2022

• Furuya T, Nishihama R, Ishizaki K, Kohchi T, Fukuda H, Kondo Y. A glycogen synthase kinase 3-like kinase MpGSK regulates cell differentiation in Marchantia polymorpha. Plant Biotechnol. 39:65–72, 2022

• Sakai Y, Higaki T, Ishizaki K, Nishihama R, Kohchi T, Hasezawa S. Migration of prospindle before the first asymmetric division in germinating spore of Marchantia polymorpha. Plant Biotechnol. 39:5–12, 2022

• Sakamoto Y, Ishimoto A, Sakai Y, Sato M, Nishihama R, Abe K, Sano Y, Furuichi T, Tsuji H, Kohchi T, Matsunaga S. Improved clearing method contributes to deep imaging of plant organs. Commun. Biol. 5:12, 2022

• Iwasaki M, Kajiwara T, Yasui Y, Yoshitake Y, Miyazaki M, Kawamura S, Suetsugu N, Nishihama R, Yamaoka S, Wanke D, Hashimoto K, Kuchitsu K, Montgomery SA, Singh S, Tanizawa Y, Yagura M, Mochizuki T, Sakamoto M, Nakamura Y, Liu C, Berger F, Yamato KT, Bowman JL, Kohchi T. Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system. Curr Biol. 31:5522–5532, 2021

• Furuya T, Shinkawa H, Kajikawa M, Nishihama R, Kohchi T, Fukuzawa H, Tsukaya H. A plant-specific DYRK kinase DYRKP coordinates cell morphology in Marchantia polymorpha. J Plant Res. 134:1265–1277, 2021

• Iwakawa H, Melkonian K, Schlüter T, Jeon HW, Nishihama R, Motose H, Nakagami H. Agrobacterium-mediated transient transformation of Marchantia liverworts. Plant Cell Physiol. 62:1718–1727, 2021

• Kohchi T, Yamato KT, Ishizaki K, Yamaoka S, Nishihama R. Development and molecular genetics of Marchantia polymorpha. Annu. Rev. Plant Biol. 72:677–702, 2021

• Suzuki H, Kohchi T, Nishihama R. Auxin biology in Bryophyta: a simple platform with versatile functions. Cold Spring Harb Perspect Biol. 13:a040055, 2021

• Umeda M, Ikeuchi M, Ishikawa M, Ito T, Nishihama R, Kyozuka J, Torii KU, Satake A, Goshima G, Sakakibara H. Plant stem cell research is uncovering the secrets of longevity and persistent growth. Plant J. 106: 326–335, 2021

• Hernández-García J, Sun R, Serrano-Mislata A, Inoue K, Vargas-Chávez C, Esteve-Bruna D, Arbona V, Yamaoka S, Nishihama R, Kohchi T, Blázquez MA. Coordination between growth and stress responses by DELLA in the liverwort Marchantia polymorpha. Curr. Biol. 31:3678–3686, 2021

• Okamura E, Ohtaka K, Nishihama R, Uchida K, Kuwahara A, Mochida K, Hirai MY. Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants. Biochem. J. 478:2217–2232, 2021

• Takizawa R, Hatada M, Moriwaki Y, Abe S, Yamashita Y, Arimitsu R, Yamato KT, Nishihama R, Kohchi T, Koeduka T, Chen F, Matsui K. Fungal-type terpene synthases in Marchantia polymorpha are involved in sesquiterpene biosynthesis in oil body cells. Plant Cell Physiol. 62:528–537, 2021

《 論文等 》–

• Sakamoto T, Matsunaga S. Chromatin dynamics and subnuclear gene positioning for transcriptional regulation. Curr Opin Plant Biol. 75:102431, 2023

• Wang N, Wang Z, Tzourtzou S, Wang X, Bi X, Leimeister J, Xu L, Sakamoto T, Matsunaga S, Schaller A, Jiang H, Liu C. The plant nuclear lamina disassembles to regulate genome folding in stress conditions. Nat Plants. 9:1081–1093, 2023

• Kikuchi S, Sakamoto T, Matsunaga S, Iwamoto A. Novel whole-mount FISH analysis for intact root of Arabidopsis thaliana with spatial reference to 3D visualization. J Plant Res. 136:423–428, 2023

• Temman H, Sakamoto T, Ueda M, Sugimoto K, Migihashi M, Yamamoto K, Tsujimoto- Inui Y, Sato H, Shibuta MK, Nishino N, Nakamura T, Shimada H, Taniguchi YY, Takeda S, Aida M, Suzuki T, Seki M, Matsunaga S. Histone deacetylation regulates de novo shoot regeneration. PNAS Nexus. 2:pgad002, 2023

• Kato S, Misumi O, Maruyama S, Nozaki H, Tsujimoto-Inui Y, Takusagawa M, Suzuki S, Kuwata K, Noda S, Ito N, Okabe Y, Sakamoto T, Yagisawa F, Matsunaga TM, Matsubayashi Y, Yamaguchi H, Kawachi M, Kuroiwa H, Kuroiwa T, Matsunaga S. Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo. Commun Biol. 6:89, 2023

• Matsunaga S. Transcription factors linking the perception of mechanical stress at the cell wall with the responsive gene network. Mol Plant. 2022 Nov 7;15(11):1662–1663, 2022

• Sakamoto T, Matsunaga S. A mechanism regulating centromere distribution in Arabidopsis thaliana. Nat Plants. 8:877-878, 2022

• Sakamoto T, Sakamoto Y, Grob S, Slane D, Yamashita T, Ito N, Oko Y, Sugiyama T, Higaki T, Hasezawa S, Tanaka M, Matsui A, Seki M, Suzuki T, Grossniklaus U, Matsunaga S. Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins. Nat Plants. 8:940–953, 2022

• Onosato H, Fujimoto G, Higami T, Sakamoto T, Yamada A, Suzuki T, Ozawa R, Matsunaga S, Seki M, Ueda M, Sako K, Galis I, Arimura GI. Sustained defense response via volatile signaling and its epigenetic transcriptional regulation. Plant Physiol. 189:922–933, 2022

• Kim JS, Sakamoto Y, Takahashi F, Shibata M, Urano K, Matsunaga S, Yamaguchi-Shinozaki K, Shinozaki K. Arabidopsis TBP-ASSOCIATED FACTOR 12 ortholog NOBIRO6 controls root elongation with unfolded protein response cofactor activity. Proc Natl Acad Sci U S A. 119:e2120219119, 2022

• Sakamoto Y, Ishimoto A, Sakai Y, Sato M, Nishihama R, Abe K, Sano Y, Furuichi T, Tsuji H, Kohchi T, Matsunaga S. Improved clearing method contributes to deep imaging of plant organs. Commun. Biol. 5:12, 2022

• Sato M, Akashi H, Sakamoto Y, Matsunaga S, Tsuji H. Whole-tissue three-dimensional imaging of rice at single-cell resolution. Int J Mol Sci. 23:40, 2021

• Yagi N, Kato T, Matsunaga S, Ehrhardt DW, Nakamura M, Hashimoto T. An anchoring complex recruits katanin for microtubule severing at the plant cortical nucleation sites. Nat Commun. 12:3687, 2021

• Shibuta MK, Sakamoto T, Yamaoka T, Yoshikawa M, Kasamatsu S, Yagi N, Fujimoto S, Suzuki T, Uchino S, Sato Y, Kimura H, Matsunaga S. A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana. Commun Biol. 4:580, 2021

• Matsuo T, Isosaka T, Hayashi Y, Tang L, Doi A, Yasuda A, Hayashi M, Lee CY, Cao L, Kutsuna N, Matsunaga S, Matsuda T, Yao I, Setou M, Kanagawa D, Higasa K, Ikawa M, Liu Q, Kobayakawa R, Kobayakawa K.Thiazoline-related innate fear stimuli orchestrate hypothermia and anti-hypoxia via sensory TRPA1 activation. Nat Commun. 12:2074, 2021

• Kobayashi A, Takayama Y, Hirakawa T, Okajima K, Oide M, Oroguchi T, Inui Y, Yamamoto M, Matsunaga S, Nakasako M. Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser. Sci Rep. 11:3877, 2021

• Kawakubo H, Kamisuki S, Suzuki K, Izaguirre-Carbonell J, Saito S, Murata H, Tanabe A, Hongo A, Murakami H, Matsunaga S, Sakaguchi K, Sahara H, Sugawara F, Kuramochi K. SQAP, an acyl sulfoquinovosyl derivative, suppresses expression of histone deacetylase and induces cell death of cancer cells under hypoxic conditions. Biosci Biotechnol Biochem. 85:85–91, 2021

• Ito N, Sakamoto T, Matsunaga S. Components of the nuclear pore complex are rising stars in the formation of a subnuclear platform of chromatin organization beyond their structural role as a nuclear gate. Cytologia. 86:183–187, 2021

• Fujiwara Y, Matsunaga S, Sakamoto T. Next generation sequence-based technologies for analyzing DNA strand breaks. Cytologia. 86:3–9, 2021

• Sakamoto Y, Sato M, Sato Y, Harada A, Suzuki T, Goto C, Tamura K, Toyooka K, Kimura H, Ohkawa Y, Hara-Nishimura I, Takagi S, Matsunaga S. Subnuclear gene positioning through lamina association affects copper tolerance. Nat Commun. 11:5914, 2021

• Nishioka S, Sakamoto T, Matsunaga S. Roles of BRAHMA and its interacting partners in plant chromatin remodeling. Cytologia. 85:263–267, 2020

• Ohgo S, Sakamoto T, Nakajima W, Matsunaga S, Wada N. Visualization of extracellular vesicles in the regenerating caudal fin blastema of zebrafish using in vivo electroporation. Biochem Biophys Res Commun. 533:1371–1377 , 2020

• Adamusova K, Khosravi S, Fujimoto S, Houben A, Matsunaga S, Fajkus J, Fojtova M. Two combinatorial patterns of telomere histone marks in plants with canonical and non-canonical telomere repeats. Plant J. 102:678–687, 2020.

• Luo L, Ando S, Sakamoto Y, Suzuki T, Takahashi H, Ishibashi N, Kojima S, Kurihara D, Higashiyama T, Yamamoto KT, Matsunaga S, Machida C, Sasabe M, Machida Y. The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2. Plant J. 101:1118–1134, 2020

• Nurani AM, Ozawa Y, Furuya T, Sakamoto Y, Ebine K, Matsunaga S, Ueda T, Fukuda H, Kondo Y. Deep imaging analysis in VISUAL reveals the role of YABBY genes in vascular stem cell fate determination. Plant Cell Physiol. 61:255–264, 2020

• Hirai R, Higaki T, Takenaka Y, Sakamoto Y, Hasegawa J, Matsunaga S, Demura T, Ohtani M. The progression of xylem vessel cell differentiation is dependent on the activity level of VND7 in Arabidopsis thaliana. Plants. 9:39.

• Kuroiwa T, Yagisawa F, Fujiwara T, Inui Y, Matsunaga TM, Kato S, Matsunaga S, Nagata N, Imoto Y, Kuroiwa H. Mitotic karyotype of the Primitive Red Alga Cyanidioschyzon merolae 10D. Cytologia. 85:107–113, 2020.

《 論文等 》2021〜

• Soma F, Takahashi F, Kidokoro S, Kameoka H, Suzuki T, Uga Y, Shinozaki K, Yamaguchi-Shinozaki K. Constitutively active B2 Raf-like kinases are required for drought-responsive gene expression upstream of ABA-activated SnRK2 kinases. Proc Natl Acad Sci U S A. 120:e2221863120, 2023

• Xu Q, Schmidt W, Aalen RB, Takahashi F. Peptide signaling in plants.  Front Plant Sci. 13:843918, 2022

• Soma F, Takahashi F, Shinozaki K, Yamaguchi-Shinozaki K. Affinity purification followed by liquid chromatography-tandem mass spectrometry to identify proteins interacting with ABA signaling components. Methods Mol Biol. 2462:181–189, 2022

• Takahashi F. Use of micrografting to study the role played by peptide signals in ABA biosynthesis. Methods Mol Biol. 2462:101–109, 2022

• Kim JS, Sakamoto Y, Takahashi F, Shibata M, Urano K, Matsunaga S, Yamaguchi-Shinozaki K, Shinozaki K. Arabidopsis TBP-ASSOCIATED FACTOR 12 ortholog NOBIRO6 controls root elongation with unfolded protein response cofactor activity. Proc Natl Acad Sci U S A. 119:e2120219119, 2022

• Kuromori T, Fujita M, Takahashi F, Yamaguchi-Shinozaki K, Shinozaki K. Inter-tissue and inter-organ signaling in drought stress response and phenotyping of drought tolerance. Plant J. 109:342–358, 2022.

• Kamiyama Y, Hirotani M, Ishikawa S, Minegishi F, Katagiri S, Rogan CJ, Takahashi F, Nomoto M, Ishikawa K, Kodama Y, Tada Y, Takezawa D, Anderson JC, Peck SC, Shinozaki K, Umezawa T. Arabidopsis group C Raf-like protein kinases negatively regulate abscisic acid signaling and are direct substrates of SnRK2. Proc Natl Acad Sci U S A. 118:e2100073118, 2021

• Bolortuya B, Kawabata S, Yamagami A, Davaapurev BO, Takahashi F, Inoue K, Kanatani A, Mochida K, Kumazawa M, Ifuku K, Jigjidsuren S, Battogtokh T, Udval G, Shinozaki K, Asami T, Batkhuu J, Nakano T. Transcriptome analysis of Chloris virgata, which shows the fastest germination and growth in the major mongolian grassland plant. Front Plant Sci. 12:684987, 2021

• Soma F, Takahashi F, Yamaguchi-Shinozaki K, Shinozaki K. Cellular phosphorylation signaling and gene expression in drought stress responses: ABA-dependent and ABA-independent regulatory systems. Plants. 10:756, 2021

• Yoshida T, Fernie AR, Shinozaki K, Takahashi F. Long-distance stress and developmental signals associated with abscisic acid signaling in environmental responses. Plant J. 105:477–488, 2021

《 論文等 》2023〜

• Desaki Y, Morishima M, Sano Y, Uemura T, Ito A, Nemoto K, Nozawa A, Sawasaki T, Arimura GI. Cytoplasmic Kinase Network Mediates Defense Response to Spodoptera litura in Arabidopsis. Plants (Basel). 12:1747, 2023

• Huang S, Maierhofer T, Hashimoto K, Xu X, Karimi SM, Müller H, Geringer MA, Wang Y, Kudla J, De Smet I, Hedrich R, Geiger D, Roelfsema MRG. The CIPK23 protein kinase represses SLAC1-type anion channels in Arabidopsis guard cells and stimulates stomatal opening. New Phytol. 238:270–282, 2023

• Nickolov K, Gauthier A, Hashimoto K, Laitinen T, Väisänen E, Paasela T, Soliymani R, Kurusu T, Himanen K, Blokhina O, Fagerstedt KV, Jokipii-Lukkari S, Tuominen H, Häggman H, Wingsle G, Teeri TH, Kuchitsu K, Kärkönen A. Regulation of PaRBOH1-mediated ROS production in Norway spruce by Ca2+ binding and phosphorylation. Front Plant Sci. 13:978586, 2022

• Steinhorst L, He G, Moore LK, Schültke S, Schmitz-Thom I, Cao Y, Hashimoto K, Andrés Z, Piepenburg K, Ragel P, Behera S, Almutairi BO, Batistič O, Wyganowski T, Köster P, Edel KH, Zhang C, Krebs M, Jiang C, Guo Y, Quintero FJ, Bock R, Kudla J. A Ca2+-sensor switch for tolerance to elevated salt stress in Arabidopsis. Dev Cell. 57:2081–2094.e7, 2022

• Hashimoto K, Koselski M, Tsuboyama S, Dziubinska H, Trębacz K, Kuchitsu K. Functional Analyses of the Two Distinctive Types of Two-Pore Channels and the Slow Vacuolar Channel in Marchantia polymorpha. Plant Cell Physiol. 63:163–175, 2022

• Kimura S, Kaya H, Hashimoto K, Wrzaczek M, Kuchitsu K. Quantitative Analysis for ROS-Producing Activity and Regulation of Plant NADPH Oxidases in HEK293T Cells. Methods Mol Biol. 2526:107–122, 2022

• Iwasaki M, Kajiwara T, Yasui Y, Yoshitake Y, Miyazaki M, Kawamura S, Suetsugu N, Nishihama R, Yamaoka S, Wanke D, Hashimoto K, Kuchitsu K, Montgomery SA, Singh S, Tanizawa Y, Yagura M, Mochizuki T, Sakamoto M, Nakamura Y, Liu C, Berger F, Yamato KT, Bowman JL, Kohchi T. Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system. Curr Biol. 31:5522–5532.e7, 2021

• Koselski M, Pupkis V, Hashimoto K, Lapeikaite I, Hanaka A, Wasko P, Plukaite E, Kuchitsu K, Kisnieriene V, Trebacz K. Impact of mammalian two-pore channel inhibitors on long-distance electrical signals in the characean macroalga nitellopsis obtusa and the early terrestrial liverwort marchantia polymorpha. Plants. 10:647, 2021

• Iino T, Hashimoto K, Asai T, Kuchitsu K, Ozeki Y. Multicolour chemical imaging of plant tissues with hyperspectral stimulated Raman scattering microscopy. Analyst. 146:1234–1238, 2021

《 論文等 》

• Sakamoto T, Matsunaga S. Chromatin dynamics and subnuclear gene positioning for transcriptional regulation. Curr Opin Plant Biol. 75:102431, 2023

• Wang N, Wang Z, Tzourtzou S, Wang X, Bi X, Leimeister J, Xu L, Sakamoto T, Matsunaga S, Schaller A, Jiang H, Liu C. The plant nuclear lamina disassembles to regulate genome folding in stress conditions. Nat Plants. 9:1081-1093, 2023

• Kikuchi S, Sakamoto T, Matsunaga S, Iwamoto A. Novel whole-mount FISH analysis for intact root of Arabidopsis thaliana with spatial reference to 3D visualization. J Plant Res. 136:423-428, 2023

• Sotta N, Sakamoto T, Kamiya T, Tabata R, Yamaguchi K, Shigenobu S, Yamada M, Hasebe M, Sawa S, Fujiwara T. NAC103 mutation alleviates DNA damage in an Arabidopsis thaliana mutant sensitive to excess boron. Front Plant Sci. 14:1099816, 2023

• Temman H, Sakamoto T, Ueda M, Sugimoto K, Migihashi M, Yamamoto K, Tsujimoto- Inui Y, Sato H, Shibuta MK, Nishino N, Nakamura T, Shimada H, Taniguchi YY, Takeda S, Aida M, Suzuki T, Seki M, Matsunaga S. Histone deacetylation regulates de novo shoot regeneration. PNAS Nexus. 2:pgad002, 2023

• Kato S, Misumi O, Maruyama S, Nozaki H, Tsujimoto-Inui Y, Takusagawa M, Suzuki S, Kuwata K, Noda S, Ito N, Okabe Y, Sakamoto T, Yagisawa F, Matsunaga TM, Matsubayashi Y, Yamaguchi H, Kawachi M, Kuroiwa H, Kuroiwa T, Matsunaga S. Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo. Commun Biol. 6:89, 2023

• Sakamoto T, Matsunaga S. A mechanism regulating centromere distribution in Arabidopsis thaliana. Nat Plants. 8:877-878, 2022

• Sakamoto T, Sakamoto Y, Grob S, Slane D, Yamashita T, Ito N, Oko Y, Sugiyama T, Higaki T, Hasezawa S, Tanaka M, Matsui A, Seki M, Suzuki T, Grossniklaus U, Matsunaga S. Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins. Nat Plants. 8:940-953, 2022

• Onosato H, Fujimoto G, Higami T, Sakamoto T, Yamada A, Suzuki T, Ozawa R, Matsunaga S, Seki M, Ueda M, Sako K, Galis I, Arimura GI. Sustained defense response via volatile signaling and its epigenetic transcriptional regulation. Plant Physiol. 189:922–933, 2022

• Shibuta MK, Sakamoto T, Yamaoka T, Yoshikawa M, Kasamatsu S, Yagi N, Fujimoto S, Suzuki T, Uchino S, Sato Y, Kimura H, Matsunaga S. A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana. Commun Biol. 4:580, 2021

• Ito N, Sakamoto T, Matsunaga S. Components of the nuclear pore complex are rising stars in the formation of a subnuclear platform of chromatin organization beyond their structural role as a nuclear gate. Cytologia. 86:183–187, 2021

• Hirai S, Miwa H, Tanaka T, Toriumi K, Kunii Y, Shimbo H, Sakamoto T, Hino M, Izumi R, Nagaoka A, Yabe H, Nakamachi T, Shioda S, Dan T, Miyata T, Nishito Y, Suzuki K, Miyashita M, Tomoda T, Hikida T, Horiuchi J, Itokawa M, Arai M, Okado H. High-sucrose diets contribute to brain angiopathy with impaired glucose uptake and psychosis-related higher brain dysfunctions in mice. Sci Adv. 7:eabl6077, 2021

• Fujiwara Y, Matsunaga S, Sakamoto T. Next generation sequence-based technologies for analyzing DNA strand breaks. Cytologia. 86:3–9, 2021

• Nishioka S, Sakamoto T, Matsunaga S. Roles of BRAHMA and its interacting partners in plant chromatin remodeling. Cytologia. 85:263–267, 2020

• Sakamoto Y, Sakamoto T. Toward an understanding of nuclear substructures beyond their classical functions. J  Plant Res. 133:447-448, 2020

• Ohgo S, Sakamoto T, Nakajima W, Matsunaga S, Wada N. Visualization of extracellular vesicles in the regenerating caudal fin blastema of zebrafish using in vivo electroporation. Biochem Biophys Res Commun. 533:1371–1377 , 2020

• Oko Y, Ito N, Sakamoto T. The mechanisms and significance of the positional control of centromeres and telomeres in plants. Journal of Plant Research, 133:471–478, 2020

《 論文等 》

• Kasuga M, Mutsuro-Aoki H, Ando T, Tamura K. Molecular anatomy of the class I ligase ribozyme for elucidation of the activity-generating unit. Biology. 12:1012, 2023

• Ando T, Tamura K. Mechanism of chiral-selective aminoacylation of an rna minihelix explored by qm/mm free-energy simulations. Life. 13:722, 2023

• 安藤格士、田村浩二. 量子化学計算による原始RNAのL-アミノ酸選択的アミノアシル化の分子機構解明. Medical Science Digest. 49:46–49, 2023

• Mutsuro-Aoki H, Tamura K. Acquisition of dual ribozyme-functions in nonfunctional short hairpin RNAs through kissing-loop interactions. Life 12:1561, 2022

• Hemmi T, Ainai A, Hashiguchi T, Tobiume M, Kanno T, Iwata-Yoshikawa N, Iida S, Sato Y, Miyamoto S, Ueno A, Sano K, Saito S, Shiwa-Sudo N, Nagata N, Tamura K, Suzuki R, Hasegawa H, Suzuki T. Intranasal vaccination induced cross-protective secretory IgA antibodies against SARS-CoV-2 variants with reducing the potential risk of lung eosinophilic immunopathology. Vaccine. 40:5892–5903, 2022

• Takeuchi A, Akatsu Y, Asahi T, Okubo Y, Ohnuma M, Teramura H, Tamura K, Shimada H. Procedur e for the efficient acquisition of progeny seeds from crossed potato plants grafted onto tomato. Plant Biotechnol 39:195–197, 2022

• Kawabata M, Kawashima K, Mutsuro-Aoki H, Ando T, Umehara T, Tamura K. Peptide bond formation between aminoacyl-minihelices by a scaffold derived from the peptidyl transferase center. Life. 12:573, 2022

• Yato K, Matsuda M, Watanabe N, Watashi K, Aizaki H, Kato T, Tamura, K, Wakita T, Muramatsu M, Suzuki R. Induction of neutralizing antibodies against hepatitis C virus by a subviral particle-based DNA vaccine. Antiviral Res. 199:105266, 2022

• Kawabata M, Kawashima K, Mutsuro-Aoki H, Ando T, Umehara T, Tamura K. Peptide bond formation between aminoacyl-minihelices by a scaffold derived from the peptidyl transferase center. Life. 12:573, 2022

• Onodera K, Suganuma N, Takano H, Sugita Y, Shoji T, Minobe A, Yamaki N, Otsuka R, Mutsuro-Aoki H, Umehara T, Tamura K. Amino acid activation analysis of primitive aminoacyl-tRNA synthetases encoded by both strands of a single gene using the malachite green assay. Biosystems. 208:104481, 2021

• Takeuchi A, Ohnuma M, Teramura H, Asano K, Noda T, Kusano H, Tamura K, Shimada H. Creation of a potato mutant lacking the starch branching enzyme gene stsbe3 that was generated by genome editing using the CRISPR/dMac3-Cas9 system. Plant Biotechnol. 38:345–353, 2021

• Horikoshi T, Noguchi H, Umehara T, Mutsuro-Aoki H, Kurihara R, Noguchi R, Hashimoto T, Watanabe Y, Ando T, Kamata K, Park SY, Tamura K. Crystal structure of Nanoarchaeum equitans tyrosyl-tRNA synthetase and its aminoacylation activity toward tRNA Tyr with an extra guanosine residue at the 5'-terminus. Biochem Biophys Res Commun. 575:90–95, 2021

• Yato K, Onodera T, Matsuda M, Moriyama S, Fujimoto A, Watashi K, Aizaki H, Tanaka T, Moriishi K, Nishitsuji H, Shimotohno K, Tamura K, Takahashi Y, Wakita T, Muramatsu M, Kato T, Suzuki R. Identification of two critical neutralizing epitopes in the receptor binding domain of hepatitis B virus preS1. J Virol 95:e01680-20, 2021

• Mutsuro-Aoki H, Hamachi K, Kurihara R, Tamura K. Aminoacylation of short hairpin RNAs  through  kissing-loop  interactions  indicates  evolutionary  trend  of  RNA molecules. BioSystems. 197:104206, 2020

• Arutaki M, Kurihara R, Matsuoka T, Inami A, Tokunaga K, Ohno T, Takahashi H, Takano H, Ando T, Mutsuro-Aoki H, Umehara T, Tamura K. G:U-independent RNA minihelix aminoacylation by Nanoarchaeum equitansalanyl-tRNA synthetase: An insight into the evolution of aminoacyl-tRNA synthetases. J Mol Evol. 88:501–509, 2020

• Ohmori S, Wani M, Kitabatake S, Nakatsugawa Y, Ando T, Umehara T, Tamura K. RNA  aptamers  for  a  tRNA-binding  protein  from Aeropyrum  pernix with  homologous counterparts distributed throughout evolution. Life. 10:11, 2020

《 論文等 》

• Nakagawa F, Kikkawa M, Chen S, Miyashita Y, Hamaguchi-Suzuki N, Shibuya M, Yamashita S, Nagase L, Yasuda S, Shiroishi M, Senda T, Ito K, Murata T, Ogasawara S. Anti-nanodisc antibodies specifically capture nanodiscs and facilitate molecular interaction kinetics studies for membrane protein. Sci Rep. 13:11627, 2023

• Suzuki M, Fujimori H, Wakatsuki K, Manaka Y, Asai H, Hyodo M, Matsuno Y, Kusumoto-Matsuo R, Shiroishi M, Yoshioka KI. Genome destabilization-associated phenotypes arising as a consequence of therapeutic treatment are suppressed by Olaparib. PLoS One. 18:e0281168, 2023

• Yamamoto T, Yasuda S, Kasai RS, Nakano R, Hikiri S, Sugaya K, Hayashi T, Ogasawara S, Shiroishi M, Fujiwara TK, Kinoshita M, Murata T. A methodology for creating mutants of G-protein coupled receptors stabilized in active state by combining statistical thermodynamics and evolutionary molecular engineering. Protein Sci. 31:e4425, 2022

• Shinozaki C, Kohno K, Shiroishi M, Takahashi D, Yoshikawa Y, Abe Y, Hamase K, Nakakido M, Tsumoto K, Inoue K, Tsuda M, Ueda T. Improvement of the affinity of an anti-rat P2X4 receptor antibody by introducing electrostatic interactions. Sci Rep. 12:1, 2021

• Shiroishi M. Structural Basis of a Conventional Recognition Mode of  IGHV1-69 Rheumatoid Factors. Adv Exp Med Biol. 171–182, 2021

• Arai S, Maruyama S, Shiroishi M, Yamato I, Murata T. An affinity change model to elucidate the rotation mechanism of V1-ATPase. Biochem Biophys Res Commun. 533:1413–1418, 2020

• 白石 充典.  膜タンパク質研究へのナノディスクの利用.「膜タンパク質工学ハンドブック(津本浩平,浜窪隆雄監修)」,エヌ・ティ・エス出版, 第2章13節, 2020

《 論文等 》

• Mita M, Sato R, Kakinuma M, Nakagawa H, Furuya T. Isolation and characterization of filamentous fungi capable of degrading the mycotoxin patulin. Microbiologyopen. 12:e1373, 2023

• Kaneko H, Miyata F, Kurokawa M, Hashimoto K, Kuchitsu K, Furuya T. Diversity and characteristics of plant immunity-activating bacteria from Brassicaceae plants. BMC Microbiol. 23:175, 2023

• Nakagawa H, Kaneko H, Furuya T. Draft Genome Sequence of Acinetobacter calcoaceticus TUS-SO1, abBacterium capable of degrading 2-phenoxyacetophenone. Microbiol Resour Announc. 12:e0016523, 2023

• Tonegawa S, Ishii K, Kaneko H, Habe H, Furuya T. Discovery of diphenyl ether-degrading Streptomyces strains by direct screening based on ether bond-cleaving activity. J Biosci Bioeng. 135:474–479, 2023

• Kaneko H, Furuya T. Draft genome sequences of endophytic pseudomonas strains, isolated from the interior of brassicaceae plants. Microbiol Resour Announc. 12:e0133722, 2023

• Nozawa D, Matsuyama A, Furuya T. Biocatalytic synthesis and evaluation of antioxidant and antibacterial activities of hydroxyequols. Bioorg Med Chem Lett. 73:128908, 2022

• Oya S, Tonegawa S, Nakagawa H, Habe H, Furuya T. Isolation and characterization of microorganisms capable of cleaving the ether bond of 2-phenoxyacetophenone. Sci Rep. 12:2874, 2022

• 古屋俊樹. 東日本支部・温故知新（21）東京理科大学における教育と研究. 生物工学会誌. 100:392, 2022

• 古屋俊樹. 植物免疫活性化内生菌の病害抵抗性亢進および二次代謝誘発への応用. アグリバイオ. 6:536–539, 2022

• Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T. An efficient direct screening system for microorganisms that activate plant immune responses based on plant–microbe interactions using cultured plant cells. Sci Rep. 11:7396, 2021

• 古屋俊樹. 植物の免疫システムを活性化する微生物の簡便なスクリーニング手法の開発. アグリバイオ. 5:47-50, 2021

• Ishida A, Furuya T. Diversity and characteristics of culturable endophytic bacteria from Passiflora edulis seeds. Microbiologyopen. 10:e1226, 2021

• Saito T, Aono R, Furuya T, Kino K. Efficient and long-term vanillin production from 4-vinylguaiacol using immobilized whole cells expressing Cso2 protein. J Biosci Bioeng. 130:260–264, 2020

• 古屋俊樹. 植物の内部で生きる微生物－植物内生菌が植物の健康を支える－. 理大科学フォーラム. 420:14–17, 2020

• 古屋俊樹. 微生物・酵素を化学の視点で捉えて役立てる. 理大科学フォーラム. 418:54–55, 2020

《 論文等 》

• Hao X, Shiromoto Y, Sakurai M, Towers M, Zhang Q, Wu S, Havas A, Wang L, Berger S, Adams PD, Tian B, Nishikura K, Kossenkov AV, Liu P, Zhang R. ADAR1 downregulation by autophagy drives senescence independently of RNA editing by enhancing p16INK4a levels. Nat Cell Biol. 24:1202-1210, 2022

• 櫻井雅之. RNA・DNA編集によるゲノム安定性制御, 理大科学フォーラム. 2022

• Shiromoto Y, Sakurai M, Minakuchi M, Ariyoshi K, Nishikura K. ADAR1 RNA editing enzyme regulates R-loop formation and genome stability at telomeres in cancer cells. Nat Commun. 12:1654, 2021

• Yang Y, Okada S, Sakurai M. Adenosine-to-inosine RNA editing in neurological development and disease. RNA Biol. 18:999–1013, 2021

• 櫻井雅之. 進化とストレス応答におけるアデノシン脱アミノ化RNA編集の意義, 理大科学フォーラム. 2021

• 櫻井雅之, 岡田俊平. A-to-I RNA エディティングの機能と最新知見.  月刊「細胞」. 2021

• 櫻井雅之, 久保田真依, 中野美世子, 岡田俊平. A-to-I RNA 塩基編集による疾患と対策技術.  BIO Clinica. 36:112-115, 2021

• Shiromoto Y, Sakurai M, Qu H, Kossenkov AV, Nishikura K. Processing of Alu small RNAs by DICER/ADAR1 complexes and their RNAi targets. RNA. 16:1801–1814, 2020

• Sakurai M, Okada S, Ueda H, Yang Y. Discovering A-to-I RNA editing through chemical methodology "ICE-seq". Methods Mol. Biol. 2181:113–148, 2020

• 櫻井雅之, 岡田俊平. A-to-I RNA 塩基編集による疾患と対策技術. MSD メディカル・サイエンス・ダイジェスト, ニューサイエンス社, 46:592–595, 2020

《 新聞・雑誌報道 , シンポジウム発表 , アウトリーチ活動 》

•  TUSフォーラム「東京理科大学のSDGs への新たな取り組み〜Afterコロナの社会変容を見据えて〜」櫻井研研究内容紹介(2020. Nov. 11/12) & 学外公開

•  東京理科大学 学報(TUS JORUNAL) 研究最前線特集「新型コロナウィルス」櫻井雅之「RNA編集を活用して新型コロナウィルスの治療法を確立する」(2020. July. Vol.218. p6)

•   東京理科大学新型コロナウィルス対応情報特設サイト「COVID-19 RESPONSE」櫻井雅之主催研究室「RNA編集を活用して新型コロナウィルスの治療法を確立する」特集掲載. (2020年7月). URL: https://www.tus.ac.jp/covid19/

•  The 43rd Annual Meeting of the Molecular Biology Society of Japan(第43回 日本分子生物学会年会) Workshop「RNAリインカネーション」”RNA reincarnation” Masayuki Sakurai, Japan, Dec. 2020.

《 論文等 》

• Okumura T, Kitajima T, Kaji T, Urano H, Matsumoto K, Inagaki H, Miyamoto K, Okada K, Ueda M. Difference in the ligand affinity among redundant plant hormone receptors of rice OsCOI1a/1b/2-OsJAZs. Biosci Biotechnol Biochem. 2023

• Kanda Y, Shinya T, Maeda S, Mujiono K, Hojo Y, Tomita K, Okada K, Kamakura T, Galis I, Mori M. BSR1, a rice receptor-like cytoplasmic kinase, positively regulates defense responses to herbivory. Int J Mol Sci. 24:10395, 2023

• Inagaki H, Hayashi K, Takaoka Y, Ito H, Fukumoto Y, Yajima-Nakagawa A, Chen X, Shimosato-Nonaka M, Hassett E, Hatakeyama K, Hirakuri Y, Ishitsuka M, Yumoto E, Sakazawa T, Asahina M, Uchida K, Okada K, Yamane H, Ueda M, Miyamoto K. Genome editing reveals both the crucial role of oscoi2 in jasmonate signaling and the functional diversity of coi1 homologs in rice. Plant Cell Physiol. 64:405-421, 2023

• Wu D, Hu Y, Akashi S, Nojiri H, Guo L, Ye CY, Zhu QH, Okada K, Fan L. Lateral transfers lead to the birth of momilactone biosynthetic gene clusters in grass. Plant J. 111:1354-1367, 2022

• Zhang D, Wang Z, Yamamoto N, Wang M, Yi X, Li P, Lin R, Nasimi Z, Okada K, Mochida K, Noutoshi Y, Zheng A. Secreted glycosyltransferase RsIA_GT of Rhizoctonia solani AG-1 IA inhibits defense responses in Nicotiana benthamiana. Pathogens. 11:1026, 2022.

• Sánchez-Sanuy F, Mateluna-Cuadra R, Tomita K, Okada K, Sacchi GA, Campo S, San Segundo B. Iron induces resistance against the rice blast fungus magnaporthe oryzae through potentiation of immune responses. Rice (N Y). 15:68, 2022 

• Knoch E, Kovács J, Deiber S, Tomita K, Shanmuganathan R, Serra Serra N, Okada K, Becker C, Schandry N. Transcriptional response of a target plant to benzoxazinoid and diterpene allelochemicals highlights commonalities in detoxification. BMC Plant Biol. 22:402, 2022

• Tsai PC, Chakraborty J, Suzuki-Minakuchi C, Terada T, Kotake T, Matsuzawa J,1Okada K, Nojiri H. The α- and β-subunit boundary at the stem of the mushroom-like α3β3-type oxygenase component of rieske non-heme iron oxygenases is the rieske-type ferredoxin-binding site. Appl Environ Microbiol. 88:e0083522, 2022

• Fukuda K, Uefune M, Fukaki H, Yamauchi Y, Hara-Nishimura I, Ozawa R, Matsui K, Sugimoto K, Okada K, Imai R, Takahashi K, Enami S, Wurst R, Takabayashi J. Aerial (+)-borneol modulates root morphology, auxin signalling and meristematic activity in Arabidopsis roots. Biol Lett. 18:20210629, 2022

• Takashima A, Kawano H, Ueda T, Suzuki-Minakuchi C, Okada K, Nojiri H. A toxin-antitoxin system confers stability to the IncP-7 plasmid pCAR1. Gene. 812:146068. 2022

• Shinya T, Miyamoto K, Uchida K, Hojo Y, Yumoto E, Okada K, Yamane H, Galis I. Chitooligosaccharide elicitor and oxylipins synergistically elevate phytoalexin production in rice. Plant Mol Biol. 109:595–609, 2022

• Valea I, Motegi A, Kawamura N, Kawamoto K, Miyao A, Ozawa R, Takabayashi J, Gomi K, Nemoto K, Nozawa A, Sawasaki T, Shinya T, Galis I, Miyamoto K, Nojiri H, Okada K. The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight. Plant Mol Biol. 109:651–666, 2022

• Itoh A, Nakazato S, Wakabayashi H, Hamano A, Shenton MR, Miyamoto K, Mitsuhashi W, Okada K, Toyomasu T. Functional kaurene-synthase-like diterpene synthases lacking a gamma domain are widely present in Oryza and related species. Biosci Biotechnol Biochem. 85:1945–1952, 2021

• Inagaki H, Miyamoto K, Ando N, Murakami K, Sugisawa K, Morita S, Yumoto E, Teruya M, Uchida K, Kato N, Kaji T, Takaoka Y, Hojo Y, Shinya T, Galis I, Nozawa A, Sawasaki T, Nojiri H, Ueda M, Okada K. Deciphering OPDA signaling components in the Momilactone-producing moss Calohypnum plumiforme. Front Plant Sci. 12:688565, 2021

• Tomita K, Yashiroda Y, Matsuo Y, Piotrowski JS, Li SC, Okamoto R, Yoshimura M, Kimura H, Kawamura Y, Kawamukai M, Boone C, Yoshida M, Nojiri H, Okada K. Genome-wide screening of genes associated with momilactone B sensitivity in the fission yeast Schizosaccharomyces pombe. G3. 11:jkab156, 2021

• Chakraborty J, Suzuki-Minakuchi C, Tomita T, Okada K, Nojiri H. A novel gene cluster is involved in the degradation of lignin-derived monoaromatics in Thermus oshimai JL-2. Appl Environ Microbiol. 87:e01589-20, 2021

• Ogawa D, Suzuki Y, Yokoo T, Katoh E, Teruya M, Muramatsu M, Ma JF, Yoshida Y, Isaji S, Ogo Y, Miyao M, Kim JM, Kojima M, Takebayashi Y, Sakakibara H, Takeda S, Okada K, Mori N, Seki M, Habu Y. Acetic-acid-induced jasmonate signaling in root enhances drought avoidance in rice. Sci Rep. 11:6280, 2021

• Mpofu E, Alias A, Tomita K, Suzuki-Minakuchi C, Tomita K, Chakraborty J, Malon M, Ogura Y, Takikawa H, Okada K, Kimura T, Nojiri H. Azoxystrobin amine: A novel azoxystrobin degradation product from Bacillus licheniformis strain TAB7. Chemosphere. 273:129663, 2021

• Toyomasu T, Shenton MR, Okada K. Evolution of Labdane-related diterpene synthases in Cereals. Plant Cell Physiol. 61:1850–1859, 2020

• Kawano H, Suzuki-Minakuchi C, Sugiyama D, Watanabe N, Takahashi Y, Okada K, Nojiri H. A novel small RNA on the Pseudomonas putida KT2440 chromosome is involved in the fitness cost imposed by IncP-1 plasmid RP4. Front Microbiol. 11:1328, 2020

• Nakamura T, Suzuki-Minakuchi C, Kawano H, Kanesaki Y, Kawasaki S, Okada K, Nojiri H. H-NS family proteins drastically change their targets in response to the horizontal transfer of the catabolic Pplasmid pCAR1. Front Microbiol. 11:1099, 2020

• Mao L, Kawaide H, Higuchi T, Chen M, Miyamoto K, Hirata Y, Kimura H, Miyazaki S, Teruya M, Fujiwara K, Tomita K, Yamane H, Hayashi K, Nojiri H, Jia L, Qiu J, Ye C, Timko MP, Fan L, Okada K. Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants. Proc Natl Acad Sci U S A. 117:12472‐12480, 2020

《 論文等 》

• Soma A, Kubota A, Tomoe D, Ikeuchi Y, Kawamura F, Arimoto H, Shiwa Y, Kanesaki Y, Nanamiya H, Yoshikawa H, Suzuki T, Sekine Y. yaaJ, the tRNA-specific adenosine deaminase, is dispensable in Bacillus subtilis. Genes (Basel). 14:1515, 2023

• Nagato Y, Tomikawa C, Yamaji H, Soma A, Takai K. Intron-dependent or independent pseudouridylation of precursor tRNA containing atypical introns in Cyanidioschyzon merolae. Int J Mol Sci. 23:12058, 2022

• Muto A, Goto S, Kurita D,Ushida C, Soma A, Himeno H. AA leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA in Escherichia coli. J Biochem. 171:459–465, 2022

• Akanuma G,  Kawamura F,  Watanabe S,  Watanabe M,  Okawa F,  Natori Y, Nanamiya H,  Asai K,  Chibazakura T,  Yoshikawa H,  Soma A,  Hishida T, Kato-Yamada Y. Evolution of ribosomal protein S14 demonstrated by the reconstruction of chimeric ribosomes in Bacillus subtilis. J Bacteriol. 203:e00599–20, 2021

《 論文等 》2023〜

• Furukawa T, Kodama H. Ishii H, Kojima S, Nakajima T, Gan WC, Velayutham TS, Abd Majid WH. Towards comprehensive understanding of piezoelectricity and its relaxation in VDF-based ferroelectric polymers. Polymer, 283:126235, 2023

• Ong DTK, Koay JSC, Sim MT, Aw KC, Nakajima T, Chen B, Tan ST, Gan WC. High performance composition-tailored PVDF triboelectric nanogenerator enabled by low temperature-induced phase transition.  Nano Energy 113:108555, 2023

• 山浦真一, 南武志, 中嶋宇史. 市販の圧電素子とヘルムホルツ型共振器を用いた音響発電の基礎的研究. 日本AEM学会誌. 31: 350-356, 2023

《 論文等 》

• Toyota K, Akashi H, Ishikawa M, Yamaguchi K, Shigenobu S, Sato T, Lange A, Tyler CR, Iguchi T, Miyagawa S. Comparative analysis of gonadal transcriptomes between turtle and alligator identifies common molecular cues activated during the temperature-sensitive period for sex determination. Gene, in press

• Toyota K, Mekuchi M, Akashi H, Miyagawa S, Ohira T. Sexual dimorphic eyestalk transcriptome of kuruma prawn Marsupenaeus japonicus. Gene, in press

• Furuminato K, Minatoya S, Seno E, Goto T, Yamazaki S, Sakaguchi M, Toyota K, Iguchi T, Miyagawa S. The role of mesenchymal estrogen receptor 1 in mouse uterus in response to estrogen. Sci Rep. 13:12293, 2023

• Akashi H, Yamamoto H, Miyagawa S. The Müllerian duct development and regression in the Reeves’ turtle, Mauremys reevesii, under female and male producing temperatures. J Herpetol. in press

• Toyota K, Yamamoto T, Mori T, Mekuchi M, Miyagawa S, Ihara M, Shigenobu S, Ohira T. Eyestalk transcriptome and methyl farnesoate titers provide insight into the physiological changes in male snow crab, Chionoecetes opilio, after the terminal molt. Sci Rep. 13:7204, 2023

• Ogino Y, Ansai S, Watanabe E, Yasugi M, Katayama Y, Sakamoto H, Okamoto K, Okubo K, Yamamoto Y, Hara I, Yamazaki T, Kato A, Kamei Y, Naruse K, Ohta K, Ogino H, Sakamoto T, Miyagawa S, Sato T, Yamada G, Baker ME, Iguchi T. Evolutionary differentiation of androgen receptor is responsible for sexual characteristic development in a teleost fish. Nat Commun. 14:1428, 2023

• Tanaka K, Matsumaru D, Suzuki K, Yamada G, Miyagawa S. The role of p63 on embryonic genital organ outgrowth in mice. Dev Growth Diff. 65:132–140, 2023

• Horie Y, Yamagishi T, Yamamoto J, Suzuki M, Onishi Y, Chiba T, Miyagawa S, Lange A, Tyler CR, Okamura H, Iguchi T. Adverse effects of thyroid-hormone-disrupting chemicals 6-propyl-2-thiouracil and tetrabromobisphenol A on Japanese medaka (Oryzias latipes). Comp Biochem Physiol C Toxicol Pharmacol. 263:109502, 2023

• Akashi H, Kubota M, Yamamoto H, Miyaoku K, Yamagishi G, Miyagawa S. Embryonic and gonadal development of the Chinese three-keeled pond turtle, Mauremys reevesii. Sci Rep 12:11619, 2022 

• Yamagishi G, Park MK, Miyagawa S. Evolution of g6pc1 paralogs in sarcopterygian lineages: multiple origins and functional divergence among ectotherms. Zoolog Sci. 39:419–430, 2022

• Myosho T, Ishibashi A, Fujimoto S, Miyagawa S, Iguchi T, Kobayashi T. Pre-self-feeding medaka fry provides a suitable screening system for in vivo assessment of thyroid hormone-disrupting potential. Environ Sci Technol 56:6479–6490, 2022

• Horie Y, Okamoto K, Yamamoto M, Takahashi C, Sato T, Miyagawa S, Okamura H, Iguchi T. Effect of thyroid hormone–disrupting chemicals on swim bladder inflation and thyroid hormone–related gene expression in Japanese medaka and zebrafish. J Appl Toxicol. 42:1385–1395, 2022

• Toyota K, Watanabe H, Hirano M, Abe R, Miyakawa H, Song Y, Sato T, Miyagawa S, Tollefsen KE, Tatarazako N, Iguchi T. Juvenile hormone synthesis and signaling disruption triggering male offspring induction and population decline in cladocerans: Review and adverse outcome pathway development. Aquat Toxicol 243:106058, 2022

•  Kajioka S, Suzuki K, Matsushita S, Hino S, Sato T, Takada S, Isono K, Takeo T, Kajimoto M, Nakagata N, Nakao M, Suyama M, DeFalco T, Miyagawa S, Yamada G. Sexual fate of murine external genitalia development: conserved transcriptional competency for male-biased genes in both sexes. Proc Natl Acad Sci USA. 118:e2024067118, 2021

• Toyota K, Arai Y, Miyagawa S, Kogo Y, Takeuchi K. Novel validating indices to indicate sexual differences in the horsehair crab Erimacrus isenbeckii (Brandt, 1848). Aquat Anim. AA2021, 1–8, 2021

• Miyaoku K, Ogino Y, Lange A, Ono A, Kobayashi T, Ihara M, Tanaka H, Toyota K Akashi H, Yamagishi G, Sato T, Tyler CR, Iguchi T, Miyagawa S. Characterization of G protein-coupled estrogen receptors in Japanese medaka, Oryzias latipes. J Appl Toxicol. 41:1390–1399, 2021

• Iguchi T, Sato T, Nakajima T, Miyagawa S, Takasugi N. New frontiers of developmental endocrinology opened by researchers connecting irreversible effects of sex hormones on developing organs. Differentiation 18:4–23, 2021

• Toyota K, Masuda S, Sugita S, Miyaoku K, Yamagishi G, Akashi H, Miyagawa S. Estrogen receptor 1 (ESR1) agonist induces ovarian differentiation and aberrant Müllerian duct development in Chinese soft-shelled turtle, Pelodiscus sinensis. Zool Stud. 59:54, 2020

• Parsons A, Lange A, Kudoh T, Hutchinson T, Miyagawa S, Iguchi T, Tyler CR. Expression dynamics of genes in the hypothalamic-pituitary-thyroid (HPT) cascade and their responses to 3,5,3’-tri-iodothyronine highlights potential vulnerability to thyroid-disrupting chemicals in zebrafish (Danio rerio) embryo-larvae. Aquat Toxicol. 225:105547, 2020

• Terauchi KJ, Miyagawa S, Iguchi T, Sato T. Hedgehog signaling regulates the basement membrane remodeling during folliculogenesis in the neonatal mouse ovary. Cell Tissue Res. 381:555–567, 2020

• Lange A, Paris J, Gharbi K, Cezard T, Miyagawa S, Iguchi T, Studholme D, Tyler CR. A newly developed genetic sex marker and its application to understanding chemically induced feminisation in roach (Rutilus rutilus). Mol Ecol Resour. 20:1007–1022, 2020 

• Kajioka D, Suzuki K, Nakada S, Matsushita S, Miyagawa S, Takeo T, Nakagata N, Yamada G. Bmp4 is an essential growth factor for the initiation of genital tubercle (GT) outgrowth. Congenit Anom (Kyoto). 60:15–21, 2020

《 論文等 》

• Unno N, Ono J, Aoki Y, Yuki K, Seki Y, Satake S. Measuring subcooled boiling heat transfer on a CuCrZr surface to predict durability of a heat sink material for plasma-facing components. Fusion Eng Des 194:113867, 2023

• Ono J, Aoki Y, Unno N, Yuki K, Suzuki K, Ueki Y, Satake S. Acoustic state detection of microbubble emission boiling using a deep neural network based on cepstrum analysis. Int J Multiph Flow. 166:104512, 2023

• Ando T, HondaY, Yanagawa T, Unno N, Taniguchi J, Satake S. A 3D-simulation and experimental study of the fluid flow around a nano-step structure formed by UV-NIL. J Photopol Sci Technol 35:111–116, 2023

• Okamoto K, Wakasa T, Taniguchi J, Satake S. Using machine learning to predict the durability of a mold for producing nanostructures in ultraviolet nanoimprint lithography. J Photopol Sci Technol 35:125–130, 2023

• Satake S. Micro- and nanoscale imaging of fluids in water using refractive-index-matched materials. Nanomaterials. 12:3203, 2022

• Unno N, Noma R, Yuki K, Satake S, Suzuki K. Effects of surface properties on wall superheat at the onset of microbubble emission boiling. Int J Multiph Flow. 155:104196, 2022

• Tanabe S, Satake S. Iterative blind deconvolution method for dwell-time adjustment. Appl Opt. 61:1743:1749, 2022

• Unno N, Yuki K, Taniguchi J, Satake S. Effect of the gap height between the vibration plate and heating surface on boiling heat transfer in a boiling bubble resonator. J Therm Sci Technol. 16:1–12, 2021

• Unno N, Yuki K, Taniguchi J, Satake S. Heat transport augmentation using vibration material excited by boiling bubbles for heat removal fromdivertor. Fusion Sci Technol. 77:716–720, 2021

• Daigo K, Akama R, Unno N, Satake S, Taniguchi J. Impact of Water Treatment Reactor using TiO2-coated Micropillar Made by UV-NIL. J Photopolym Sci Technol 34:127–132, 2021

• Ono J, Unno N, Yuki K, Taniguchi J, Satake S. Visualization and sound measurements of vibration plate in a boiling bubble resonator. Fluid 6:443, 2021

• Unno N, Yuki K, Taniguchi J, Satake S. Boiling heat transfer enhancement by self-excited vibration. Int J Heat Mass Transf. 153:119588, 2020

• Unno N, Yuki K, Inoue R, Kogo Y. Taniguchi J, Satake S. Enhanced evaporation of porous materials with micropores and high porosity. J Therm Sci Technol. 15:JTST0007, 2020

• Matsuda Y, Kigami H, Unno N, Satake S, Taniguchi J. Three-dimensional flow measurements around micro-pillars made by UV-NIL in water via micro-digital holographic particle tracking velocimetry (Micro-DHPTV), J Photopolym Sci Tec. 33:557–562, 2020

•  Uchiyama J, Seki Y,  Kunugi T, Satake S. Turbulent heat transfer for coolant water flow in plasma facing component. Fusion Eng Des.159:111817, 2020

• 海野徳幸, 佐竹信一. 屈折率整合法を用いた微細構造体周りの流れ場の3次元可視化技術及び光触媒リアクターへの新展開. Journal of the heat transfer society of Japan. 59:52-58, 2020

• 江口菜穂, 山下陽介, 秋吉英治, 酒井哲, 長濱智生, 冨川喜弘, 中島英彰, 杉田考史, 坂崎貴俊, 斉藤拓也, 水野亮. 成層圏・中間圏の大気化学の諸問題. 大気化学研究 48, 2023

• 梅澤拓, 丹羽洋介, 斉藤拓也, 齋藤尚子, 豊田栄. 温室効果気体とオゾン層破壊物質. 大気化学研究 47(047A02), 2022 

• Saito T, Kusumoto N, Hiura T. Relation of leaf terpene contents to terpene emission profiles in Japanese cedar (Cryptomeria japonica). Ecol Res.1–9, 2022

• Umezawa T, Sugawara S, Kawamura K, Oyabu I, Andrews SJ,   Saito T , Aoki S., Nakazawa T. Towards reconstructing the Arctic atmospheric methane history over the 20th century: measurement and modelling results for the North Greenland Ice Core Project firn. Atmospheric Chem Phys. 22:6899–6917, 2022

• Park S, Western L,  Saito T, Reddington A, Henne S, Fang X, Prinn R, Manning A, Montzka S, Fraser P, Ganesan A, Harth C, Kim J, Krummel P, Liang Q, Muhle J, O’Doherty S, Park H, Park M, Park MK, Reimann S, Salameh P, Weiss R, Rigby M. A decline in emissions of CFC-11 and related chemicals from eastern China. Nature, 590:433–437, 2021

• Hiura T, Yoshioka H, Matsunaga SN, Saito T, Kohyama TI, Kusumoto N, Uchiyama K, Suyama Y, Tsumura Y. Diversification of terpenoid emissions proposes a geographic structure based on climate and pathogen composition in Japanese cedar. Sci Rep. 11:1, 2021

• Kawamura K, Umezawa T, Sugawara S, Ishidoya S, Ishijima K, Saito T, Oyabu I, Murayama S, Morimoto S, Aoki S, Nakazawa T. Composition of firn air at the North Greenland Ice Core Project (NGRIP) site.  Polar Data J. 5:89–98, 2021

• Claxton T, Hossaini R, Wilson C, Montzka SA, Chipperfield MP, Wild O, Bednarz EM, Carpenter LJ, Andrews SJ, Hackenberg SC, Mühle J, Oram D, Park S, Park MK, Atlas E, Navarro M, Schauffler S, Sherry D, Vollmer M, Schuck T, Engel A, Krummel PB, Maione M, Arduini J, Saito T, Yokouchi Y, O'Doherty S, Young D, Lunder C. A Synthesis Inversion to Constrain Global Emissions of Two Very Short Lived Chlorocarbons: Dichloromethane, and Perchloroethylene.  J Geophys Res Atmos. 125:e2019JD031818, 2020.

• UezawaT, Andrews SJ, Saito T. A Cryogen-free automated measurement system of stable carbon isotope ratio of atmospheric methane. J Meteorol Soc Japan. 98:115–127, 2020

《 論文等 》

• Akiyama Y, Kimura K, Komatsu S, Takarada T, Maeda M, Kikuchi A. A simple colorimetric assay of bleomycin-mediated DNA cleavage utilizing double-stranded DNA-modified gold nanoparticles. Chembiochem 24:e202200451, 2023

• Mukaida A, Adachi R, Akiyama Y, Kamimura M. Facile preparation of a hairpin DNA-gold nanoparticle monoconjugate with a single-dye molecule and lactobionic acid as targeting ligand. Anal Sci. 37:785–788, 2021

• Ishihara R, Kitane R, Akiyama Y, Inomata S, Hosokawa K, Maeda M, Kikuchi A.  Multiplex microRNA detection on a surface-functionalized power-free microfluidic chip. Anal Sci. 37:747–751, 2021

• Fukumoto S, Kawade M, Kimura K, Akiyama Y, Kikuchi A. Preparation of spherical nucleic acid nanoparticles containing a self-immolative poly(carbamate) core. Anal Sci. 37:781–784, 2021

• Yang TY, Yu L, Akiyama Y, Takarada T, Maeda M. DNA-programmed bimodal 2D assembly of  differently sized nanoparticles via folding of precursory circular chains. Langmuir 36:5588–5595, 2020

《 論文等 》2023〜

• Sumino Y, Yamashita R, Miyaji K, Ishikawa H, Otani M, Yamamoto D, Okita E, Okamoto Y, Krafft MP, Yoshikawa K, Shioi A. Droplet duos on water display pairing, autonomous motion, and periodic eruption. Sci Rep 13:12377, 2023

• Sakuta H, Nakatani N, Torisawa T, Sumino Y, Tsumoto K, Oiwa K, Yoshikawa K. Self-emergent vortex flow of microtubule and kinesin in cell-sized droplets under water/water phase separation. Commun Chem 6: 80, 2023