How to set the app to achieve that the predators only fire at non-empty spots and exclude other predators .. what are the different ways to set this?
How can prey protect themselves from attacks and toxins? How do I set this up?
How can one model various aspects of T6SS? How is the published literature reflected in the BacFighT6?
Explain the basic research behind Tit-for-Tat. How can I reproduce some of this research in this simulation?
How can bacteria regulate their T6SS? How could I model any of this with BacFighT6?
What is the importance of lysis for T6SS-mediated killing? How do I model this with BacFighT6?
What are the different known mechanisms how bacteria regulate subcellular localization of their T6SS? How can any of this be simulated in the BacFighT6?
What is known about regulation of Tit-for-Tat on the molecular level? Can you summarize the mechanism?
Do bacteria use T6SS-mediated killing to get resources? What experiments were done to show this and how prevalent is this behavior? How could this be modeled with BacFighT6?
What are examples of computer modelling that provided novel insights into T6SS mode of action? Give me couple examples of how I could set up the settings of the BacFighT6 to replicate results from computer modeling manuscripts.
How can I start the simulation to test a certain range of parameters? What are my options to import the settings? What are the different ways I can position cells in the arena?
What are the different ways to start a simulation? How to import settings, cell positions or simulation states? What are the options how to replicate a simulation and how to branch from a certain point in time?
What is the role of capsule in T6SS mediated interactions? How is capsule production simulated, what are the calculations steps? How is the color of the capsule exactly calculated?
What is the faint blue color in between cells representing? How is this calculated?
