Study material

Lectures

• Introduction to ASIAME 2023 - JC Auguet, CNRS Montpellier

1 - The origin of Eukaryotes - D. Vaulot Roscoff - PDF

2 - Bacterial ecology, diversity and ecological role - T Bouvier - CNRS, MARBEC Montpellier 

3 - Molecular tools for the study of microbial diversity - JC Auguet - CNRS, Montpellier 

4 - Evolution and Diversity of Microbial Eukaryotes - D Vaulot - CNRS Roscoff - PDF

5 - Distribution of phytoplankton in marine waters - D. Vaulot, CNRS - PDF

6 - The Marine Nitrogen Cycle: players, processes and a decade of discovery - C Charoenpong - Chulalongkorn University 

7 - An Introduction to the Photophysiology of Marine Picocyanobacteria S Phongphattarawat - Prince of Songkla University 

8 - The Marine Carbon cycle  - Nguyen Thi Huyen T - Fullbright University 

10 - Viral ecology, life strategies and ecological role - Y Bettarel - IRD, MARBEC, Montpellier 

11 - Microbes associated to marine macro-organisms: an understudied and vulnerable biodiversity hotspot - JC Auguet - CNRS, Montpellier 

13 - Eutrophication, contaminants and bioremediation in marine fish farms - M S Santander-de Leon - Univ. of the Philippines Visayas-Miagao 

15 - Antibiotic resistome from the One-Health perspective: understanding and controlling antimicrobial resistance transmission  - Dr Nguyen Quang Huy, USTH Hanoï 

Practicals -  Laboratory

• Microplastics - T. Bouvier - CNRS MARBEC

• DNA Sampling and Extraction - JC Auguet - CNRS MARBEC

Practical - Bioinformatics

• PB1: R tutorial - D. Vaulot CNRS Roscoff - PDF

• PB2: MetaPR2 phytoplankton distribution

  • Report template

• PB3-4: Dada2, Phyloseq, Alpha and Beta diversity - JC Auguet CNRS MARBEC

Student presentations

All student presentations can be found here