On this page, you will find:
Shi, W., Koo, D.E.S., Fraser, S.E., Cutrale, F., Pre-processing visualization of hyperspectral fluorescent data with Spectrally Encoded Enhanced Representations. Nat Commun 11, 726 (2020).
Liu, J., Peng, Y., Feng, Z., Shi, W., Reloading functionally ameliorates disuse-induced muscle atrophy by reversing mitochondrial dysfunction, and similar benefits are gained by administering a combination of mitochondrial nutrients. Free Radical Biology and Medicine. Apr;69:116-28 (2014).
Yang, L., Luo, C., Chen, C., Wang, X., Shi, W., All-trans retinoic acid protects against doxorubicin-induced cardiotoxicity by activating the ERK2 signaling pathway. British Journal of Pharmacology. Jan;173(2):357-71 (2016).
Shi, W., Koo, D.E.S., Cutrale, F., Fraser, S.E., A Hyperspectral Imaging System. US Provisional 62419075.
HyperSpectral-Phasors (HySP) and SEER
Tutorial [Watch video]
Simulation sets of 3 fluorescent spectra at different overlap level and different signal-to-noise [Download Simulation_cube_Tiff_files].
Freshly isolated mouse tracheal explant, multispectral, Zeiss 780 Quasar, 40x 1.1NA W, Excitation: 740nm laser, Detection: 32 wavelength bins, 8.9nm bandwidth, 410-695 nm range [Download .lsm file]
Zebrafish ubi:Zebrabow, multispectral, Zeiss 780 Quasar, 40x 1.1NA W, Excitation: 458nm laser, Detection: 32 wavelength bins, 8.9nm bandwidth, 410-695 nm range [Download .lsm file]
Convert wavelength to RGB (Python)
This function (wavelength2rgb) is adapted from Dan Bruton's work.
Github: @Wenigma