Publications

1. Gholse, A., Nagarajaram, H.A. (2026). A Comprehensive Case Study of Host–Pathogen Protein–Protein Interactions: Exploring the Human Proteins Targeted by HIV and MTB. In: Jois, S., Shrestha, P. (eds) Computational Approaches in Drug Design. Challenges and Advances in Computational Chemistry and Physics, vol 42. Springer, Cham. https://doi.org/10.1007/978-3-032-07880-3_5

2. Nithya, C., Nagarajaram, H.A. (2026). Protein–Protein Interaction Network Analysis and Visualization Tools: A Comprehensive Review. In: Jois, S., Shrestha, P. (eds) Computational Approaches in Drug Design. Challenges and Advances in Computational Chemistry and Physics, vol 42. Springer, Cham. https://doi.org/10.1007/978-3-032-07880-3_2

3. Tejaswini Baral1, Anwesh Maile2, Nagarajaram Hampapathalu Adimurthy2, Kavitha Saravu3,4, Chandrashekar Udyavara Kudru5, Jitendra Singh6, Chiranjay Mukhopadhyay7,8, Mahadev Rao1, Mohan K Manu9, Sonal Sekhar Miraj*(2025) Exploring Gut Microbiota and its Predicted Functions in Pulmonary Tuberculosis: A Multi-Regional Study Using Public 16S Datasets PLoS One 20 : e0336337. https://doi.org/10.1371/journal.pone.0336337

4. Sahid Afrid Mollick , Gin Khan Khual , Anwesh Maile , Hampapathalu Adimurthy Nagarajaram, Pulamaghatta N. Venugopal* (2025) Antimicrobial Resistance: A One Health Metagenomic Study of Indian Tribal Gut Total Environment Microbiology 1 (2025) https://doi.org/10.1016/j.temicr.2025.100040

5. Ananya Ghosh, Anwesh Maile* and Hampapathalu Adimurthy Nagarajaram (2025) Prokaryotic Co-occurrence Patterns in Diverse Indian Mangrove Ecosystems Sci Rep 15, 38283 (2025). https://doi.org/10.1038/s41598-025-18055-1

6. Saratchandra Singh Khumukcham, Vasudevarao Penugurti, Suresh Bugide, Anju Dwivedi, Anita Kumari, P.S. Kesavan, Sruchytha Kalali, Yasaswi Gayatri Mishra, Vakkalagadda A. Ramesh, Hampapathalu A. Nagarajaram, Aprotim Mazumder, Bramanandam Manavathi (2023) HPIP and RUFY3 are non-canonical guanine exchange factors of Rab5 to regulate endocytosis-coupled focal adhesion turnover,  J. Biol. Chem.https://doi.org/10.1016/j.jbc.2023.105311 (Oct, 2023)

7. Nithya, C., Manjari Kiran & H.A.Nagarajaram (2023) Hubs and Bottlenecks in Protein-Protein Interaction Networks in “Methods Molecular Biology”, Vol. 2719, Sudip Mandal (Eds): “Reverse Engineering of Regulatory Networks” https://doi.org/10.1007/978-1-0716-3461-5_13, pages 227-248

8. Nilisha Rastogi, Sheeba Zarin, Anwar Alam, Guruprasad Varma Konduru, P. Manjunath, Abhay Mishra, Saroj Kumar, Hampapathalu Adimurthy Nagarajaram, Seyed Ehtesham Hasnain, Nasreen Zafar Ehtesham (2023) Structural and biophysical properties of therapeutically important proteins Rv1509 and Rv2231A of Mycobacterium tuberculosis Int. J.Biol.Macromol. 245, 125455 (Aug 1 2023)

9. Nithya, C., Manjari Kiran & H.A.Nagarajaram (2023) Dissection of Hubs and Bottlenecks in Human Protein-Protein Interaction Network Comp. Biol & Chemistry 102,  https://doi.org/10.1016/j.compbiolchem.2022.107802 (01 Feb 2023

10. Rakesh Trivedi & H.A.Nagarajaram (2022) Intrinsically Disordered Proteins: An Overview Int. J. Mol. Sci.  23, 14050. https://doi.org/10.3390/ijms232214050 (14 Nov 2022)

11. Guruprasad Varma Konduru & Hampapathalu Adimurthy Nagarajaram (2022) Human TMPRSS2 non-catalytic ectodomain and SARS-CoV-2 S2' subunit interaction mediated SARS-CoV-2 endocytosis: a model proposal with virtual screening for potential drug molecules to inhibit this interaction, Journal of Biomolecular Structure and Dynamics  41(13), 6422-6433 DOI: 10.1080/07391102.2022.2105956 (31 July 2022)

12. Ajay K Chaudhary, Aishwarya Gholse, H.A. Nagarajaram, Ashwin B Dalal, Neerja Gupta, Atanu K Dutta, Sumita Danda, Rekha Gupta, V H Sankar, Gandham SriLakshmi Bhavani, Katta M Girisha, , Sobha R Phadke, Prajnya Ranganath and Murali Dharan Bashyam (2022) Ectodysplasin pathogenic variants affecting the furin-cleavage site and unusual clinical features define X-linked hypohidrotic ectodermal dysplasia in India Am J Med Genet Part A 188, 788-805 (01 Dec 2021)

13. Seera, S and Nagarajaram HA (2022)  Effect of Disease Causing Mutations on Intrinsically Disordered Regions in Proteins Protein and Peptide Letters 29, 254-267 (date 22 March 2022

14. Trivedi R, Nagarajaram HA (2020) Substitution Scoring Matrices for Proteins - An Overview. Protein Science 29, 2150-2163 

15. Hari Parapatla, Ramurthy Gudla, Guruprasad Varma Konduru, Elsin Raju Devadasu,. Hampapathula Adimurthy Nagarajaram, Manjula Sritharan, Rajagopal Subramanyam and Dayananda Siddavattam (2020) Organophosphate hydrolase interacts with ferric-enterobactin and promotes iron uptake in association with TonB dependent transport system Biochemical Journal 477 2821-2840

16. Ravindra Taware, Khushman Taunk, T. V.Santosh Kumar, Jorge A. M. Pereira, José S. Câmara, H. A. Nagarajaram, Gopal Chandra Kundu, Srikanth Rapole (2020) Extracellular volatilomic alterations induced by hypoxia in breast cancer cells Metabolomics 16, 21

17. Trivedi, R., Nagarajaram, H.A. (2019) Amino acid substitution scoring matrices specific to intrinsically disordered regions in proteins. Sci Rep 9, 16380 doi:10.1038/s41598-019-52532-8

18. Ramurthy Gudla1, Guruprasad Varma Konduru2, Hampapathalu Adimurty Nagarajaram3, and Dayananda Siddavattam* (2019) Organophosphate hydrolase interacts with Ton components and targets membrane only in presence of ExbB/ExbD complex. FEBS Letters 593 581-593

19. Ravindra Taware, Khushman Taunk, Jorge Pereira, Amey Shirolkar, Dharmesh Soneji , José S Câmara, H A Nagarajaram, Srikanth Rapole**  (2018) Volatilomic insight of head and neck cancer via the effects observed on saliva metabolites Scientific Reports 8:17725 | DOI:10.1038/s

20. Khushman Taunk, RavindraTaware, Tushar H. More, Priscilla Porto-Figueira, Jorge Pereira, Rajkishore Mohapatra, Dharmesh Soneji , José S Câmara, H A Nagarajaram, Srikanth Rapole**  (2018) A non-invasive approach to explore the discriminatory potential of the urinary volatome of invasive ductal carcinoma of the breast RSC Advances 8, 25040-25050

21. Carina Cavaco, Jorge Pereira, Khushman Taunk, Ravindra Taware, Srikanth Rapole, Hampapathalu Nagarajaram and José S. Câmara** (2018) Screening of salivary volatiles for putative breast cancer discrimination: An exploratory study involving geographic distant populations Analytical and Bioanalytical Chemistry, 410, 4459-4468

22. Taware,  Khushman Taunk, Jorge A. M. Pereira, Rahul Dhakne, Narayanan Kannan,  Dharmesh Soneji, José S. Câmara,  H A Nagarajaram,  Srikanth Rapole** (2017) Investigation of urinary volatomic alterations in head and neck cancer: A non-invasive approach towards diagnosis and prognosi Metabolomics 13, 111 (DOI 10.1007/s11306-017-1251-6)

23. Kumar, Parveen; Munnangi, Prathyusha; Chowdary, KVS; Shah, Varun; Shinde, Swapnil; Kolli, Nanci; Halehalli, Rachita; Nagarajaram, Hampapathalu; Maddika, Subbareddy (2017)  A human tyrosine phosphatase interactome mapped by proteomic profiling J. Proteome Res. 16,  2789–2801

24.  Manjari Kiran and H.A.Nagarajaram** (2016) Interaction and Localization Diversities of Global and Local Hubs in Human Protein­‐Protein Interaction Network Molecular Biosystems 12, 2875 – 2882

25. A K Chaudhary, R Mohapatra, H A Nagarajaram, P Ranganath, A Dalal, A Dutta, S Danda, K Girisha, M D Bashyam** (2015). The novel missense EDAR p.L397H mutation causes autosomal dominant hypohidrotic ectodermal dysplasia. Journal of european academy of dermatology and venearology 31, (doi.org/10.1111/jdv.13587

26. Radha Rama Devi A**, Ramesh V.A, Nagarajaram H.A, SatishS.P.S, Jayanthi U, Lokesh Lingappa (2015) Spectrum of Mutations in Glutaryl-CoA Dehydrogenase gene in GlutaricAciduria Type I - Study from South India Brain & Development DOI: http://dx.doi.org/10.1016/j.braindev.2015.05.013

27. Abdul Mueed Bidcho, Ashwin Dalal, Rakesh Trivedi, Anju Shukla, Sheela Nampoothiri, VH Sankar, Sumita Danda, Neerja Gupta, Madhulika Kabra, Shrikiran A Hebbar, Ramesh Y Bhat, Divya Matta, Alka V Ekbote, Ratna Dua Puri, Shubha R Phadke, Kalpana Gowrishankar, Shagun Aggarwal , Prajnya Ranganath, Sheetal Sharda, Mahesh Kamate, Chaitanya A Datar, Kamalakshi Bhat, Nutan Kamath, Puthiya Mundyat Gopinath, Ishwar C Verma, HA Nagarajaram, Kapaettu Satyamoorthy, Katta Mohan Girisha** (2015) Recurrent and novel GLB1 mutations in India Gene 567, 173-181

28. 21.  Jorge Pereira**, Priscilla Porto-Figueira, Carina Cavaco, Khushman
    Taunk, Srikanth  Rapole, Rahul Dhakne, Hampapathalu Nagarajaram, José Câmara (2015) Breath analysis as a potential and non-invasive frontier in disease diagnosis. A metabolomic approach. Metabolites 5, 3-55

29. Rachita Halehalli and H.A.Nagarajaram** (2015) Molecular principles of human virus protein-protein interactions Bioinformatics 31, 1025-1033

30. Anupam Sinha and H.A. Nagarajaram** (2014) Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants. Proteomics 14, 2242-2248

31. Siddaramappa J Patil, Gaurava Kumar Rai, Venkatraman Bhat, Vakkalagadda A Ramesh, H A Nagarajaram, Jyoti Matalia, Shubha R Phadke (2014) Distal Arthrogryposis Type 5D With A Novel ECEL1 Gene Mutation Am J Med Genet Part A DOI: 10.1002/ajmg.a.36702 

32. Abdul Mueed Bidchol, Ashwin Dalal, Hitesh Shah, Suryanarayana S, Sheela Nampoothiri, Madhulika Kabra, Neerja Gupta, Sumita Danda, Kalpana Gowrishankar, Shubha R Phadke, Seema Kapoor, Mahesh Kamate, IC Verma, Ratna Dua Puri, VH Sankar, A Radha Rama Devi, SJ Patil, Prajnya Ranganath, S Jamal Md Nurul Jain, Meenal Agarwal, Ankur Singh,  Pallavi Mishra, Parag M Tamhankar, Puthiya Mundyat Gopinath, Nagarajaram HA, Kapaettu Satyamoorthy, Katta Mohan Girisha (2014) GALNS Mutations in Indian Patients with Mucopolysaccharidosis IVA  Am J Med Genet Part Ahttps://doi.org/10.1002/ajmg.a.36735

33. Rachita Halehalli and H.A.Nagarajaram** (2014) Viral proteins that bridge unconnected proteins and components in human PPI network Mol.Bio.Sys. 10, 2448-2458

34. Anusha Uttarilli, Prajnya Ranganath, S. Jamal Md Nurul Jain, Krishna Prasad C, Anupam Sinha, Ishwar C Verma, Shubha R Phadke, Ratna D Puri, Sumita Danda, Mamta N Muranjan, Ganesh Jevalikar, H A Nagarajaram, Ashwin B Dalal**(2014) Novel mutations of the ARSB gene in Indian patients with Mucopolysaccharidosis Type VI Indian J. Med. Red.142, 414-425

35. Murali D. Bashyam**, Ajay K. Chaudhary, Manjari Sinha, H. A. Nagarajaram et al (2014) Splice, insertion-deletion and nonsense mutations that perturb the Phenylalanine hydroxylase transcript cause Phenylketonuria in India. J.Cell.Biochem.  115:566-574

36. Suresh B. Mudunuri,  S. Patnana and H.A. Nagarajaram** (2014) MICdb3.0:  A Comprehensive Resource of Microsatellite Repeats from Prokaryotic Genomes Database doi:10.1093/database/bau005

37. Murali D. Bashyam, Ajay K. Chaudhary, Manjari Kiran, Venkat Reddy, Hampapathalu A. Nagarajaram, Ashwin Dalal, Leena Bashyam, Deepti Suri, Anju Gupta, Neerja Gupta, Madhulika Kabra, Ratna Puri, RadhaRamaDevi, Seema Kapoor, Sumita Danda. Molecular analyses of novel ASAH1 mutations causing Farber lipogranulomatosis: analyses of exonic splicing enhancer inactivating mutation. Clin Genet,2014; 86:530-538.

38. Manjari Sinha and H.A.Nagarajaram** (2013) Global versus local hubs in human protein-protein interaction network J.Proteome Res. 12: 5436–5446

39. Anupam Sinha and H.A.Nagarajaram** (2013) Effect of Alternative Splicing on the Degree Centrality of nodes in PPI networks of Homo sapiens J.Proteome Res. 12: 1980–1988

40. Vishal Acharya and H.A.Nagarajaram** (2013) Response to: Statistical Analysis of Missense Mutation Classifiers Human Mutat 34 407

41. Suresh B. Mudunuri**, Priyatosh Mishra, and Nagarajaram, H.A. (2012) "In Silico Survey of Distribution and Frequency of Imperfect Microsatellite Repeats in Viral Genomes.", Proceedings of IEEE International Conference on Data Science & Engineering (ICDSE), 2012 Vol. 1, pp. 31-36 

42. Murali D Bashyam**, Ajay K Chaudhary, Manjari, H A Nagarajaram, A Radha Rama Devi, Leena Bashyam, E Chandrakanth Reddy, Ashwin Dalal (2012). Molecular genetic analysis of MSUD from India reveals mutations causing altered protein truncation affecting the C-termini of E1α and E1β. Journal of Cellular Biochemistry113:3122-3132

43. Murali Bashyam**, Guroji Purushotham, Ajay K Chaudhary, Madhumohan Rao, Vishal Acharya, Tabrez Mohammad, H. A. Nagarajaram, Vuppaladadhiam Hariram, Calambur Narasimhan (2012) A low prevalence of MYH7/MYBPC3 mutations among Familial Hypertrophic Cardiomyopathy patients in India. Mol Cell Biochem. 360:373-382

44. M D Bashyam**, A K Chaudhary, E C Reddy, V Reddy, V Acharya, H A Nagarajaram (2012), A R R Devi, L Bashyam, A B Dalal, N Gupta, M Kabra, M Agarwal, S R Phadke, R Tainwala, R Kumar, S V Hariharan. An Ectodysplasin A receptor (EDAR) founder mutation results in a high frequency of the autosomal recessive form of Hypohidrotic Ectodermal Dysplasia in India. Br J Dermatol. 166:819-8

45. Kumar and H.A.Nagarajaram** (2012) A Study on Mutational Dynamics of Simple Sequence Repeats in Relation to Mismatch Repair System in Prokaryotic Genomes J. Mol. Evol. 74 127-139 

46. Suresh B. Mudunuri**, Priyatosh Mishra, and Nagarajaram, H.A. (2012) "Distributional Analysis and Motif Frequencies of Compound Microsatellite Repeats in Viral Genomes.", Proceedings of IEEE International Conference on Computing, Electronics and Electrical Technologies (ICCEET), 2012, vol.1, pp.887-893

47. Vishal Acharya and H.A.Nagarajaram** (2012) Hansa: An automated method for discriminating disease and neutral human nsSNPs Hum Mutat 33 332-337 

48. Md. Tabrez Shamim and H A Nagarajaram** (2011) A Hierarchical Approach to Protein Fold Recognition J. Integr. Bioinform. 8:185

49. Murali Bashyam**, Guroji Purushotham, Ajay K Chaudhary, Madhumohan Rao, Vishal Acharya, Tabrez Mohammad, H. A. Nagarajaram, Vuppaladadhiam Hariram, Calambur Narasimhan (2012) A low prevalence of MYH7/MYBPC3 mutations among Familial Hypertrophic Cardiomyopathy patients in India. Mol Cell Biochem.  360:373-382

50. Md. Tabrez Shamim and H.A. Nagarajaram** (2011) SVM-Based method for protein structural class prediction using secondary structural content and structural information of amino acids J.Bioinform. Comput. Biol DOI: 10.1142/ S02197200 11005422

51. Anupam Sinha and H.A.Nagarajaram** (2011) Studies on Protein-Protein Interactions: A New Frontier in Computational Biology in “Proceedings of 2nd International Conference on Metacomputing” Editor:Dr. P.K.Roy,  Allied Publishers Pvt. Ltd., New Delhi

52. Pankaj Kumar, P. S. Chitanya and H A Nagarajaram** (2011) PSSRdb: A Relational Database of Polymorphic Simple Sequence Repeats Extracted from Prokaryotic Genomes Nucleic Acid Res. 39(suppl 1): D601-D605  

53. Suresh B Mudunuri, Pankaj Kumar, Allam Appa Rao, S Pallamsetty and H A Nagarajaram** (2010) G-IMEx: A comprehensive software tool for detection of microsatellites from genome sequences Bioinformation 5: 221-223 

54. G Purushotham, K Madhumohan, Mohammad Anwaruddin, H.A.Nagarajaram, Vuppaladadhiam Hariram,Calambur Narasimhan,Murali D Bashyam** (2010) The MYH7 p.R787H mutation causes hypertrophic cardiomyopathy in two unrealted families.Exp clin Cardial 2010;15(1):e1-e4. 

55.  Suresh, M., Rao, A.A., Mishra, P. and H.A. Nagarajaram** (2010) Comparative Analysis of Microsatellite Detecting Software: A Significant Variation in Results and Influence of Parameters, Proceedings of International Symposium on Biocomputing, (ISB 2010), Kerala, February 15-17, 2010. (Link to ACM Digital Library) 

56. Suresh B. Mudunuri**, Allam Appa Rao, S Pallamsetty, Priyatosh Mishra and H.A.Nagarajaram (2009) VMD: Viral Microsatellite Database - A Comprehensive Resource for All Viral Microsatellites. Journal of Computer Science and Systems Biology. 22: 283-000. 

57. Korupolu, R.V., Achary, M.S., Aneesa, F., Sathish, K., Wasia, R., Sairam, M., Nagarajaram, H.A. and Singh, S.S** (2009) Profilin oligomerization and its effect on poly (l-proline) binding and phosphorylation  Int. J.Biol.Macromol. 45: 265-273

58. Achary, M.S. and H.A. Nagarajaram** (2009) Effects of Disease Causing Mutations on the Essential Motions in Proteins J.Biomol. Struct. Dyn. 26: 609-624 

59. Achary, M.S. and H.A. Nagarajaram** (2008) Comparative docking studies of CYP1b1 and its PCG associated mutant forms J. Biosci. 33: 699–713

60. Md. Tabrez Anwar Shamim, Mohammad Anwaruddin and H. A. Nagarajaram**
    (2007) Support Vector Machine based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs. Bioinformatics 23:3320-3327

61. Suresh, M and H.A.Nagarajaram** (2007) IMEx: Imperfect Microsatellite Extractor Bioinformatics 23:1181-7

62. The NMITLI-BioSuite Team (….H.A. Nagarajaram.) (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry–academia collaboration) Curr. Sci. 92: 29-38

63. Sreenu,V.B.,  Kumar, P., Nagaraju, J. and H.A. Nagarajaram** (2007) Simple sequence repeats in mycobacterial genomes J.Biosci. (A peer-reviewed special issue on Computational Biology) 32: 1-15

64. M.S. Achary, A. B.M. Reddy, S. Chakrabarti, S.G. Panicker, A.K. Mandal, N.Ahmed, D. Balasubramanian, S.E. Hasnain, and H.A.Nagarajaram** (2006) Disease Causing Mutations in Proteins: Structural Analysis of the CYP1b1 Mutations Causing Primary Congenital Glaucoma in Humans Biophysical J. 91: 4329-4339

65. Sreenu,V.B.,  Kumar, P., Nagaraju, J. and H.A. Nagarajaram** (2006) Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: Implications on genome evolution and plasticity BMC Genomics 7:78-88 (Highly accessed article)

66.  Cheeran, A., Suganthan, R.B., Swapna, G., Bandey, I., Acharya, S., Nagarajaram, H.A. and Sen. R** (2005) E. coli RNA polymerase mutations located near the upstream edge of RNA:DNA hybrid and the beginning of the RNA exit channel are defective for transcription antitermination by N protein from lambdoid phage H-19B J.Mol. Biol 352:  28-43

67. Prasad,M.D., Muthulakshmi,M., Arunkumar,K.P., Madhu,M., Sreenu,V.B., Pavithra,V., Bose,B., Nagarajaram,H.A., Mita,K., Shimada, T. and Nagaraju, J**(2005) SilkSatDb: A microsatellite database of the silkworm, Bombyx mori. Nucleic Acids Research. 33: D403-D406

68. H.A.Nagarajaram ,Prathima Iengar and Indira Ghosh** (2005) In silico approach to antimalarial drug discovery: Design of selective inhibitor to Plasmodium falciparum aspartic proteases Frontiers in Biophysics168-181.

69. R.K.Gundu, B.Bose, S.Swamynathan, V.B.Sreenu, N.Pavan, S.Acharya and H.A.Nagarajaram** (2005) Frontiers in Bioinformatics Research: The Biodiversity Issues "Biodiversity : Status and Prospects" Editors: Pramod Tandon, Manju Sharma and Renu Swarup, Narosa Publishing House, New Delhi.

70.  Ahmed Kamal**, G. Ramesh, O. Srinivas, P. Ramulu, N. Laxman ,Tasneem Rehana, M.Deepak, M.S. Achary and H. A. Nagarajaram (2004). Design, Synthesis, and Evaluation of Mixed Imine-Amine Pyrrolobenzodiazepine Dimers with Efficient DNA-Binding Affinity and Potent Cytotoxicity Bio-organic & Medicinal Chemistry 12:5427-5436. 

71. Sreenu, V.B., Ranjitkumar, G., Swaminathan, S., Priya, S., Bose, B., Narendra Pavan, M., Nagaraju, J., H.A.Nagarajaram** (2004) MICdb - Database of Prokaryotic Microsatellites. Nucleic Acids Research Published in online database issue. 

72. Majeed, A.A., Ahmed, N., Rao, K.R., Ghousunnissa, S., Kausar, F., Bose, B., H.A. Nagarajaram, Katoch, V.M., Cousins, D.V., Sechi, L.A., Gilman, R.H. and Hasnain, S.E** (2004) AmpliBASE MTTM: A Mycobacterium tuberculosis diversity knowledgebase. Bioinformatics 20:989-92.

73. V.B.Sreenu, G.Ranjitkumar, S.Swaminathan, S.Priya, B.Bose, M.N.Pavan, Geetha Thanu, J.Nagaraju and H.A.Nagarajaram** (2003) MICAS: A fully automated web server for microsatellite extraction and analysis from prokaryote and viral genomic sequences. Applied Bioinformatics 2(3) 165-168. 

74. H.A.Nagarajaram** and S.E.Hasnain** (2003) Current Status of Post-Genomics Computational Biology in "Computing and Information Sciences : Recent Trends" Editor: J.C.Misra, Narosa Publishing House, New Delhi.

75.  V.B.Sreenu, Vishwanath Alevoor, J.Nagaraju and H.A.Nagarajaram** (2003) MICdb: Database of Prokaryotic Microsatellites Nucleic Acids Research 31 106-108. 

76. A.Kamal**, N. Laxman, G. Ramesh, P. Ramulu, O. Srinivas, K. Neelima, A. K. Kondapi, V. B. Sreenu and H.A.Nagarajaram (2002) Design, synthesis, and 1991evaluation of new non-cross linking pyrrolobenzodiazepine dimers with efficient DNA-binding ability and potent antitumour activity J. Med. Chem45 4679-4688. 

77.  E.Narayanan, H.A.Nagarajaram, C. Ramakrishnan and N.Srinivasan** (2002) Influence of solvent molecules on the stereochemical code of glycine residue PROTEINS 49 326-334. 

78. S.G.Panicker**, A.B.M.Reddy, A.K.Mandal,N.Ahmed, H.A.Nagarajaram, S.E.Hasnain and D.B. Balasubramanian (2002) Identification of novel mutations causing familial primary congenital glaucoma in  indian pedigrees Investigative Ophthalmology & Visual Science 43 1358-1366 2002.  

79. J. Mendes, H.A. Nagarajaram, Cláudio M. Soares, Tom L. Blundell, Maria Arménia Carrondo** (2001). Incorporating knowledge-based biases into an energy-based  side-chain   modeling method: application to comparative modeling of protein structure Biopolymers 59:2 72-86.

80. N. Campillo**, H.A. Nagarajaram & I. Ghosh (2001). Phosphoribosyltransferase superfamily: A comparative structural analysis J.Mol.Model. 7 80-89. 

81. D.F.Burke@, C.Dean@, H.A.Nagarajaram@, ... , Tom L.Blundell** and  K.Mizuguchi** (1999).  An iterative structure-assisted approach to sequence alignment and comparative modeling PROTEINS 3 55-60.  @joint first authors.

82. H.A.Nagarajaram, B.V.B.Reddy and Tom L. Blundell** (1999).  Analysis and prediction of inter-strand packing distances between beta-sheets of globular proteins. Protein Eng. 12 1055-1062.

83. B.V.B.Reddy, H.A.Nagarajaram and Tom L. Blundell** (1999).  Analysis of interactive packing of secondary structural elements in alpha/beta units in proteins Protein Sci. 8 573-586.

84. R.Sowdhamini, D.F.Burke, Jing-Fei Huang, K.Mizuguchi, H.A.Nagarajaram, N.Srinivasan, R.E.Stewart and Tom L. Blundell** (1998). CAMPASS: A database of structurally aligned protein superfamilies Structure 61087-1094.

85. K.Gunasekaran, H.A.Nagarajaram, C. Ramakrishnan and P. Balaram** (1998) Stereochemical punctuation marks in protein structures: Glycine and Proline containing helix stop signals J.Mol.Biol. 275 917-932.

86. R.Sowdhamini, D. F. Burke, C. Deane, Jing-Fei Huang, K.Mizuguchi, H.A.Nagarajaram, J.P.Overington, N.Srinivasan, R.E.Steward and Tom L.Blundell** (1998).  Protein 3D structural databases: Domains, structurally aligned homologues and superfamilies  Acta Crystallogr. D54 1168-1177.

87. R.Varadarajan**, H.A.Nagarajaram and C. Ramakrishnan (1996) A procedure for the prediction of temperature-sensitive mutants of a globular protein based solely on the amino acid sequence  Proc. Natl. Acad. Sci. (USA) 93 13908-13913.

88. H.A.Nagarajaram and C. Ramakrishnan** (1995)  Stereochemical studies on cyclic peptides - Detailed energy minimisation studies on hydrogen bonded all-trans cyclic pentapeptide backbones J.Biosci. 20 591-611.

89. H.A.Nagarajaram, R.Sowdhamini, C.Ramakrishnan and P.Balaram** (1993) Termination of right handed helices in proteins by the residues in left handed helical conformation FEBS letters 321 79-83.

90. H.A.Nagarajaram, P.K.Paul, K. Ramanarayanan, K.V.Soman  and C. Ramakrishnan** (1992) Conformational studies on beta-bends containing a cis peptide unit Int. J. Peptides Proteins Res. 40 383-394.

91. H.A.Nagarajaram and C. Ramakrishnan** (1991) Energy minimisation studies on cyclic pentapeptides Indian J. Phys.65B 449-454.

Edited Books :

• Advanced Computing and Communication Technologies Proceedings of the 9th ICACCT, 2015 Choudhary, R.K., Mandal, J.K., Auluck, N., Nagarajaram, H.A. (Eds.) Advances in Intelligent Systems and Computing,  Springer (2016)