1. Aravind B, Nayak S, Singh R, Chandran A, Mangrauthia SK, Neeraja CN, Sundaram RM, Barbadikar K, Molla K, Thakur V, Mohannath G. Comprehensive bioinformatic mining of NGR5 sequence variation and haplotyping coupled with NGR5 expression analysis under diverse nitrogen regimes identifies favourable NGR5 haplotypes. (2026) (Under submission)
ISSN: NA | IF: NA | Citation:
2. Saji A, Bijukumar G, Thakur V. Adaptive evolutionary changes in regulatory genes and cis-elements associated with Kranz development in monocots. BioRxiv 2024.02.22.581542; doi: https://doi.org/10.1101/2024.02.22.581542
ISSN: NA | IF: NA | Citation:
3. Shukla M, Bohra DL, Rao B, Narayan L, Kiran S, Thakur V. Genomic Footprints of Bottlenecks, Isolation, and Inbreeding: A Case Study of Two Vulture Cohorts in India. BioRxiv 2026.04.30.721611; https://doi.org/10.64898/2026.04.30.721611
ISSN: NA | IF: NA | Citation:
4. Nayak, S., Gandham, P., Rani, T. S., Vadlamudi, S., Ruperao, P., Saxena, R., Rathore, A., Thakur, V., & Gopalakrishnan, S. (2026). Genome Sequencing, In Vitro Assays, and Metabolomics Reveals Biocontrol and PGP Traits of a Rhizobacterium, Streptomyces cavourensis SAI-25. Preprints. https://doi.org/10.20944/preprints202504.2632.v4
ISSN: NA | IF: NA | Citation:
1. Chandel N, Patel P, Somvanshi PR, Verma AK, Thakur V. Inverse Association between Serum Vitamin B12 Level and Abundance of Potential B12-Producing Gut Microbes in Indian Children. J Nutr. 2025 Oct 13:S0022-3166(25)00640-6. https://doi.org/10.1016/j.tjnut.2025.10.021
ISSN: 0022-3166 | IF: 3.8 | Citation:
1. Gandham, P., Vadla, N., Saji, A., …, Thakur V. Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth-promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA-696). Sci Rep 14, 15934 (2024). https://doi.org/10.1038/s41598-024-66835-y
ISSN: 2045-2322 | IF: 4.4 | Citation:
2. Chandel N, Maile A, Shrivastava S, Verma AK, Thakur V. Establishment and perturbation of human gut microbiome: common trends and variations between Indian and global populations. Gut Microbiome. 2024;5:e8. https://doi.org/10.1017/gmb.2024.6
ISSN: 2632-2897 | IF: NA | Citation: 0
3. Chandel, N.,Gorremuchu, J.P., & Thakur, V. (2024). Antimicrobial resistance burden, and mechanisms of its emergence in gut microbiomes of Indian Population. Front. Microbiomes Sec. Omics Approaches Volume 3 - 2024 | https://doi.org/10.3389/frmbi.2024.1432646
ISSN: 2813-4338 | IF: NA | Citation: 0
4. Chandel N, Somvanshi PR, Thakur V. Characterisation of Indian gut microbiome for B-vitamin production and its comparison with Chinese cohort. British Journal of Nutrition. 2024;131(4):686-697. https://doi.org/10.1017/S0007114523002179
ISSN: 0007-1145 | IF: 3.6 | Citation: 4
1. Ruperao P, Rangan P, Shah T, Thakur V, Kalia S, Mayes S, Rathore A. The Progression in Developing Genomic Resources for Crop Improvement. Life. 13(8):1668 (2023). https://doi.org/10.3390/life13081668
ISSN: 2075-1729 | IF: 3.2 | Citation:
2. Saradadevi GP, Fultz D, Ramgopal MK, Subramanian AT, Prince G, Thakur V, Mohannath G. Structural variation among assembled genomes facilitates development of rapid and low‐cost NOR‐linked markers and NOR‐telomere junction mapping in Arabidopsis. Plant Cell Reports 42:1059-69 (2023) https://doi.org/10.1007/s00299-023-03012-x
ISSN: 0721-7714| IF: 5 | Citation:
3. Iyer LR, Chandel N, Verma AK, Thakur V, Paul J, Mandal AK and Bhattacharya A. Effect of Entamoeba histolytica infection on gut microbial diversity and composition in diarrhoeal patients from New Delhi. Parasitology Research, 122:285–298 (2023) https://doi.org/10.1007/s00436-022-07728-9
ISSN: 0932-0113 | IF: 2.4 | Citation:
1. Dhania NK, Chauhan VK, Abhilash D, Thakur V, Chaitanya RK, Dutta-Gupta S, Dutta-Gupta A. Gut-specific arylphorin mediates midgut regenerative response against Cry-induced damage in Achaea janata. Compr Biochem Physiol Part B: Biochemistry and Molecular Biology, 255:110600 (2021) https://doi.org/10.1016/j.cbpb.2021.110600
ISSN: 1096-4959 | IF: 2.5 | Citation: 1
2. Chatterjee J, Coe RA, Acebron K, Thakur V, …., Quick WP. Identification of a low CO2 responsive mutant from chemical mutagenesis of Setaria viridis shows that reduced carbonic anhydrase severely limits C4 photosynthesis. Journal of Experimental Botany, Volume 72, Issue 8, 2 April 2021, Pages 3122–3136 (2021), https://doi.org/10.1093/jxb/erab039
ISSN: 1460-2431 | IF: 7 | Citation: 6
3. Bohra, A., Gandham, P., Rathore, A., Thakur V., et al. Identification of microRNAs and their gene targets in cytoplasmic male sterile and fertile maintainer lines of pigeonpea. Planta 253, 59 (2021). https://doi.org/10.1007/s00425-021-03568-6
ISSN: 1432-2048 | IF: 4.1 | Citation: 3
4. Danila F, Thakur V, et al. “Bundle sheath suberisation is required for C4 photosynthesis in a Setaria viridis mutant" Communications Biology 4, 254 (2021) https://doi.org/10.1038/s42003-021-01772-4
ISSN: 2399-3642 | IF: 6.3 | Citation: 6
5. Chatterjee, J., Thakur, V., Nepomuceno, R. et al. Natural Diversity in Stomatal Features of Cultivated and Wild Oryza Species. Rice 13, 58 (2020). https://doi.org/10.1186/s12284-020-00417-0
ISSN: 1939-8433 | IF: 4.8 | Citation: 5
1. Chatterjee, J., Thakur, V., Nepomuceno, R. et al. Natural Diversity in Stomatal Features of Cultivated and Wild Oryza Species. Rice 13, 58 (2020). https://doi.org/10.1186/s12284-020-00417-0
ISSN: 1939-8433 | IF: 4.8 | Citation: 5
2. Subramaniam G*, Thakur V*, Saxena RK*, et al. Complete genome sequence of sixteen plant growth promoting Streptomyces strains. Sci Rep 10, 10294 (2020). https://doi.org/10.1038/s41598-020-67153-9
ISSN: 2045-2322 | IF: 4.4 | Citation: 16
3. Karki S, Lin H.S., Danila FR, Abu-Jamous B, Giuliani R, Emms DM, Coe RA, Covshoff S, Woodfield H, Bagunu E, Thakur V, Wanchana S, Slamet-Loedin I, Cousins AB, Hibberd JM, Kelly S, Quick WP. A role for neutral variation in the evolution of C4 photosynthesis. BioRxiv (2020) https://doi.org/10.1101/2020.05.19.104299
1. Naiyer S, Kaur D, Ahamad J, Singh SS, Singh YP, Thakur V, Bhattacharya A and Bhattacharya S (2019) Transcriptomic analysis reveals novel downstream regulatory motifs and highly transcribed virulence factor genes of Entamoeba histolytica. BMC Genomics 20:206. https://doi.org/10.1186/s12864-019-5570-z
ISSN: 1471-2164 | IF: 4 | Citation: 11
1. Thakur V. RNA-Seq Data Analysis for Differential Gene Expression Using HISAT2-StringTie-Ballgown Pipeline. Methods Mol Biol. 2024;2812:101-113. https://doi.org/10.1007/978-1-0716-3886-6_5
2. Thakur V, Wanchana S (2019) Gene Discovery by Forward Genetic Approach in the Era of High-Throughput Sequencing. In OMICS-Based Approaches in Plant Biotechnology, John Wiley & Sons.
3. Biswal AK, Singh AK, Thakur V, Mangrauthia SK, and Ponnuswamy R (2017) Breeding Strategies to Convert C3 into C4 Plants. In Advanced Molecular Plant Breeding, ed by DN Bhardwaj, Apple Acad. Press, USA.
4. Azad RK, Lawrence J, Thakur V, and Ramaswamy R (2007) Segmentation of Genomic DNA Sequences. In Advanced Computational Methods in Biocomputing and Bioimaging, ed. by Tuan D. Pham, Nova Science Publishers, New York.