Publications

2025

Cuenca, Ana; Lueke, Bettina; Vicentini, Renato; Nauen, Ralf (2025) The Frequency and Spread of a GABA-Gated Chloride Channel Target-Site Mutation and Its Impact on the Efficacy of Ethiprole Against Neotropical Brown Stink Bug, Euschistus heros (Hemiptera: Pentatomidae). Insects, 16, 422.

João G P Vieira, Gustavo T Duarte, Carlos H Barrera-Rojas, Cleverson C Matiolli, Américo J C Viana, Raphael de A Campos, Lucas E D Canesin, Renato Vicentini, Fabio T S Nogueira, Michel Vincentz (2025) Regulation of abscisic acid receptor mRNA stability: Involvement of microRNA5628 in PYL6 transcript decay. Plant Physiology, 197, 1.

2024

Mônica Letícia Turibio Martins, Danilo Augusto Sforça, Luís Paulo dos Santos, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Alexandre Hild Aono, Cláudio Benício Cardoso-Silva, Sonia Vautrin, Arnaud Bellec, Renato Vicentini, Helene Bérgès, Carla Cristina da Silva, Anete Pereira de Souza (2024) Identifying candidate genes for sugar accumulation in sugarcane: an integrative approach. BMC Genomics 25, 1201.

William Mira, Otto Heinz, Aline Gonçalvez, Larissa Crema, Renato Vicentini, Samara Cardoso, Gabriela Leila Berto, Isabella K. R. Dias, Valdeir Arantes, Elisson Romanel, André Ferraz, Tatiane da Franca Silva (2024) SacEXP32 sugarcane expansin gene expression increases cell size and improves biomass digestibility. J. Plant Biochem. Biotechnol. 33, 313–325.

2023

Souza, Uiara Romero; Portilla, Juan Pablo Llerena; Vicentini, Renato; Mazzafera, Paulo (2023) Transcription factors of lignin biosynthesis respond to cold and drought in Eucalyptus urograndis. Theoretical and Experimental Plant Physiology, 35, 17-30.

2022

Pereira, Leticia B; Gambarini, Victor Marques de Oliveira; de Menezes, Alexandre Barreto; Ottoboni, Laura MM; Vicentini, Renato (2022) Influence of Sugarcane Variety on Rhizosphere Microbiota Under Irrigated and Water-Limiting Conditions. Current Microbiology, 79.

Joni E. Lima; Luis H. D. Serezino; Melissa K. Alves; André L. Tagliaferro; Marielle Vitti; Silvana Creste; Diego M. Riaño-Pachón; Vicentini, Renato; Antonio Figueira (2022) Root nitrate uptake in sugarcane (Saccharum spp.) is modulated by transcriptional and presumably posttranscriptional regulation of the NRT2.1/NRT3.1 transport system. Molecular Genetics and Genomics, 297, 1403–1421.

2021

Julien Venail; Paolo Henrique da Silva Santos; Manechini, João R Vieira; Alves, Leonardo Cardoso; Maximiliano Scarpari; Thais Falcão; Elisson Romanel; Michael Brito; Vicentini, Renato; Lucia Pinto; Stephen Derek Jackson (2021) Analysis of the PEBP gene family and identification of a novel FLOWERING LOCUS T orthologue in sugarcane, Journal of Experimental Botany, erab539.

Manechini, João R Vieira; Henrique, P; Romanel, Elisson; Brito, Michael S; Scarpari, M. S.; Jackson, S.; Pinto, Luciana R; Vicentini, Renato (2021) Transcriptomic Analysis of Changes in Gene Expression during Flowering Induction in Sugarcane Under Controlled Photoperiodic Conditions. Frontiers in Plant Science, 12, p. 635784.

Fanelli, Amanda; Rancour, David M.; Sullivan, Michael; Karlen, Steven D.; Ralph, John; Riaño-Pachón, Diego Mauricio; Vicentini, Renato; Silva, Tatiane Da Franca; Ferraz, André; Hatfield, Ronald D; Romanel, Elisson (2021) Overexpression of a Sugarcane BAHD Acyltransferase Alters Hydroxycinnamate Content in Maize Cell Wall. Frontiers in Plant Science, 12, p. 626168.

da Silva, Paulo H; Manechini, João R Vieira; Brito, Michael S; Romanel, Elisson; Vicentini, Renato; Scarpari, Maximiliano; Jackson, Stephen; Pinto, Luciana R. (2021) Selection and validation of reference genes by RT-qPCR under photoperiodic induction of flowering in sugarcane (Saccharum spp.). Scientific Reports, v. 11, p. 4589.

2020

Pereira, Leticia Bianca; Gambarini, Victor Marques de Oliveira; Menezes, Alexandre Barretto; Ottoboni, Laura M.M; Vicentini, Renato (2020) Responses of the sugarcane rhizosphere microbiota to different levels of water stress. Applied Soil Ecology, 159: 103817.

Bergamo, Luana Walravens ; Silva-Brandão, Karina Lucas ; Vicentini, Renato ; Fresia, Pablo ; Azeredo-Espin, Ana Maria Lima. (2020) Genetic Differentiation of a New World Screwworm Fly Population from Uruguay Detected by SNPs, Mitochondrial DNA and Microsatellites in Two Consecutive Years. Insects, 11: 539.

2019

Sforça, Danilo Augusto ; Vautrin, Sonia ; Cardoso-Silva, Claudio Benicio ; Mancini, Melina Cristina ; Romero-Da Cruz, María Victoria ; Pereira, Guilherme Da Silva ; Conte, Mônica ; Bellec, Arnaud ; Dahmer, Nair ; Fourment, Joelle ; Rodde, Nathalie ; Van Sluys, Marie-Anne ; Vicentini, Renato ; Garcia, Antônio Augusto Franco ; Forni-Martins, Eliana Regina ; Carneiro, Monalisa Sampaio ; Hoffmann, Hermann Paulo ; Pinto, Luciana Rossini ; Landell, Marcos Guimarães De Andrade ; Vincentz, Michel ; Berges, Helene ; De Souza, Anete Pereira. (2019) Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions. Frontiers in Plant Science, 10, 1.

Pereira, Leticia B. ; Andrade, Gabriela S. ; Meneghin, Silvana P. ; Vicentini, Renato ; Ottoboni, Laura M. M. (2019). Prospecting Plant Growth-Promoting Bacteria Isolated from the Rhizosphere of Sugarcane Under Drought Stress. Current Microbiology, 1, 1-10.

Alves, Leonardo Cardoso ; Llerena, Juan Pablo Portilla ; Mazzafera, Paulo ; Vicentini, Renato. (2019) Diel oscillations in cell wall components and soluble sugars as a response to short-day in sugarcane (Saccharum sp.). BMC Plant Biology, 19, 215.

2018

Garcia Tavares, Rafael ; Lakshmanan, Prakash ; Peiter, Edgar ; O’Connell, Anthony ; Caldana, Camila ; Vicentini, Renato ; Soares, José Sérgio ; Menossi, Marcelo. (2018) ScGAI is a key regulator of culm development in sugarcane. Journal Of Experimental Botany, 69: 3823 - 3837.

Gomes, Ana Érika Inácio ; Stuchi, Leonardo Prado ; Siqueira, Nathália Maria Gonçalves ; Henrique, João Batista ; Vicentini, Renato ; Ribeiro, Marcelo Lima ; Darrieux, Michelle ; Ferraz, Lúcio Fábio Caldas. (2018) Selection and validation of reference genes for gene expression studies in Klebsiella pneumoniae using Reverse Transcription Quantitative real-time PCR. Scientific Reports, 8, 9001.

2017

Cunha, Camila P. ; Roberto, Guilherme G. ; Vicentini, Renato ; Lembke, Carolina G. ; Souza, Glaucia M. ; Ribeiro, Rafael V. ; Machado, Eduardo C. ; Lagôa, Ana M. M. A. ; Menossi, Marcelo. (2017) Ethylene-induced transcriptional and hormonal responses at the onset of sugarcane ripening. Scientific Reports, 7, 43364.

Nobile, Paula Macedo ; Bottcher, Alexandra ; Mayer, Juliana L. S. ; Brito, Michael S. ; Dos Anjos, Ivan A. ; Landell, Marcos Guimarães De Andrade ; Vicentini, Renato ; Creste, Silvana ; Riaño-Pachón, Diego Mauricio ; Mazzafera, Paulo. (2017) Identification, classification and transcriptional profiles of dirigent domain-containing proteins in sugarcane. Molecular Genetics and Genomics, 1, 1-18.

Rojas, Thaís Cabrera Galvão ; Lobo, Francisco Pereira ; Hongo, Jorge Augusto ; Vicentini, Renato ; Verma, Renu ; Maluta, Renato Pariz ; Dias Da Silveira, Wanderley. (2017) Genome-Wide Survey of Genes Under Positive Selection in Avian Pathogenic Escherichia coli Strains. Foodborne Pathogens and Disease, 1, 1.

Vilela, Mariane De Mendonça ; Del-Bem, Luiz-Eduardo ; Van Sluys, Marie-Anne ; De Setta, Nathalia ; Kitajima, João Paulo ; Cruz, Guilherme Marcelo Queiroga ; Sforça, Danilo Augusto ; De Souza, Anete Pereira ; Ferreira, Paulo Cavalcanti Gomes ; Grativol, Clícia ; Cardoso-Silva, Claudio Benicio ; Vicentini, Renato ; Vincentz, Michel. (2017) Analysis of three sugarcane homo/homeologous regions suggests independent polyploidization events of Saccharum officinarum and Saccharum spontaneum. Genome Biology and Evolution, 9, evw293-278.

2016

Palermo, Bruna Rafaella Z. ; Castro, Daniel B.A. ; Pereira, Letícia Bianca ; Cauz, Ana Carolina G. ; Magalhães, Beatriz L. ; Carlos, Camila ; Da Costa, Fernanda L.P. ; Scagion, Guilherme P. ; Higa, Juliana S. ; Almeida, Ludimila D. ; Das Neves, Meiriele Da S. ; Cordeiro, Melina Aparecida ; Do Prado, Paula F.V. ; Da Silva, Thiago M. ; Balsalobre, Thiago Willian A. ; Paulino, Luciana C. ; Vicentini, Renato ; Ferraz, Lúcio F.C. ; Ottoboni, Laura M.M. (2016) Draft genome sequence of Kocuria sp. SM24M-10 isolated from coral mucus. Genomics Data, 7, 121-123.

Medeiros, Ane ; Mingossi, Fabiana ; Dias, Renata ; Franco, Flávia ; Vicentini, Renato ; Mello, Marcia ; Moura, Daniel ; Silva-Filho, Marcio. (2016) Sugarcane Serine Peptidase Inhibitors, Serine Peptidases, and Clp Protease System Subunits Associated with Sugarcane Borer (Diatraea saccharalis) Herbivory and Wounding. International Journal of Molecular Sciences (Online), 17, 1444.

Paulo, D. F. ; Azeredo-Espin, A. M. L. ; Canesin, L. E. C. ; Vicentini, R. ; Junqueira, A. C. M. (2016) Identification and characterization of microRNAs in the screwworm flies Cochliomyia hominivorax andCochliomyia macellaria (Diptera: Calliphoridae). Insect Molecular Biology, 26, 46-57.

Vasconcellos, Suzan P. ; Sierra-Garcia, Isabel N. ; Dellagnezze, Bruna M. ; Vicentini, Renato ; Midgley, David ; Silva, Cynthia C. ; Santos Neto, Eugenio V; Volk, Herbert ; Hendry, Philip ; Oliveira, Valéria M. (2016) Functional and genetic characterization of hydrocarbon biodegrader and exopolymer-producing clones from a petroleum reservoir metagenomic library. Environmental Technology, 38, 1-12.

Alves, Cristiane De Santis ; Vicentini, R. ; Duarte, Gustavo T. ; Pinoti, Vitor F. ; Vincentz, Michel ; Nogueira, Fabio T. S. (2016) Genome-wide identification and characterization of tRNA-derived RNA fragments in land plants. Plant Molecular Biology, 1, 1-14.

2015

Pereira, Letícia Bianca ; Vicentini, Renato ; Ottoboni, Laura M.M. (2015) Characterization of the core microbiota of the drainage and surrounding soil of a Brazilian copper mine. Genetics and Molecular Biology, 38, 484-489.

Santos, AB; Bottcher, A; Kiyota, E; Mayer, JLS; Vicentini, R; Creste, S; Landell, MGA; Mazzafera, P. (2015) Lignin biosynthesis in sugarcane is affected by low temperature. Environmental and Experimental Botany, 120, 31-42.

Serrazina, S; Santos, C; Machado, H; Pesquita, C; Vicentini, R; Pais, MS; Sebastiana, M; Costa, R. (2015) Castanea root transcriptome in response to Phytophthora cinnamomi challenge. Tree Genetics & Genomes , 11:6.

Vicentini, R ; Bottcher, Alexandra ; Brito, Michael ; Santos, Adriana ; Creste, Silvana ; Landell, Marcos ; Cesarino, I ; Mazzafera, Paulo . Large-scale transcriptome analysis of two sugarcane genotypes contrasting for lignin content. Plos One, 2015, in press.

Santos, Adriana ; Bottcher, Alexandra ; Kiyota, Eduardo ; Mayer, Juliana ; Vicentini, R ; Brito, Michael ; Creste, Silvana ; Landell, Marcos ; Mazzafera, Paulo . Water Stress Alters Lignin Content and Related Gene Expression in Two Sugarcane Genotypes. Journal of Agricultural and Food Chemistry, 1, 150504004309005 , 2015.

Castro, Daniel ; Pereira, Leticia ; Silva, Marcus ; Silva, Barbara ; Palermo, Bruna ; Carlos, Camila ; Belgini, Daiane ; Limache, Elmer ; Lacerda, Gileno ; Nery, Mariana ; Gomes, Milene ; Souza, Salatiel ; Silva, Thiago ; Rodrigues, Viviane ; Paulino, Vicentini, R, Renato ; Ferraz, Lucia ; Ottoboni, Laura . High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine. Genomics Data, 5, 34-35, 2015.

Santos Brito, Michael ; Nobile, Paula ; Bottcher, Alexandra ; dos Santos, Adriana ; Creste, Silvana ; Landell, Marcos ; Vincentz, Michel ; Vicentini, R ; Mazzafera, P. Expression Profile of Sugarcane Transcription Factor Genes Involved in Lignin Biosynthesis. Tropical Plant Biology, 1, 19-30, 2015.

2014

Cardoso-Silva, Claudio Benicio ; Costa, Estela Araujo ; Mancini, Melina Cristina ; Balsalobre, Thiago Willian Almeida ; Canesin, Lucas Eduardo Costa ; Pinto, Luciana Rossini ; Carneiro, Monalisa Sampaio ; Garcia, Antonio Augusto Franco ; De Souza, Anete Pereira ; Vicentini, R . De Novo Assembly And Transcriptome Analysis Of Contrasting Sugarcane Varieties. Plos One, V. 9, P. E88462, 2014

Horta, Maria Augusta Crivelente ; Vicentini, R ; Delabona, Priscila Da Silva ; Laborda, Prianda ; Crucello, Aline ; Freitas, Sindélia ; Kuroshu, Reginaldo Massanobu ; Polikarpov, Igor ; Pradella, José Geraldo Da Cruz ; Souza, Anete Pereira . Transcriptome Profile Of Trichoderma Harzianum Ioc-3844 Induced By Sugarcane Bagasse. Plos One, V. 9, P. E88689, 2014

Ossa Henao, Diana Marcela ; Vicentini, R ; Rodrigues, Viviane Drumond ; Bevilaqua, Denise ; Ottoboni, Laura Maria Mariscal . Differential Gene Expression In Acidithiobacillus Ferrooxidans Lr Planktonic And Attached Cells In The Presence Of Chalcopyrite. Journal Of Basic Microbiology, 54, 2014

Thiebaut, Flávia ; Grativol, Clícia ; Tanurdzic, Milos ; Carnavale-Bottino, Mariana ; Vieira, Tauan ; Motta, Mariana Romeiro ; Rojas, Cristian ; Vicentini, R ; Chabregas, Sabrina Moutinho ; Hemerly, Adriana Silva ; Martienssen, Robert A. ; Ferreira, Paulo Cavalcanti Gomes . Differential Srna Regulation In Leaves And Roots Of Sugarcane Under Water Depletion. Plos One, V. 9, P. E93822, 2014

Grativol, Clícia ; Regulski, Michael ; Bertalan, Marcelo ; Mccombie, W. Richard ; Da Silva, Felipe Rodrigues ; Zerlotini Neto, Adhemar ; Vicentini, R; Farinelli, Laurent ; Hemerly, Adriana Silva ; Martienssen, Robert A. ; Ferreira, Paulo Cavalcanti Gomes . Sugarcane Genome Sequencing By Methylation Filtration Provides Tools For Genomic Research In The Genus Saccharum. Plant Journal (Print), 2014

Pereira, Letícia Bianca ; Vicentini, R ; Ottoboni, Laura M. M. . Changes In The Bacterial Community Of Soil From A Neutral Mine Drainage Channel. Plos One, V. 9, P. E96605, 2014

Azevedo-Júnior, Gilson Martins De ; Guimarães-Marques, Giselle Moura ; Cegatti Bridi, Leticia ; Christine Ohse, Ketlen ; Vicentini, R ; Tadei, Wanderli ; Rafael, Míriam Silva . Phylogenetic Analysis Of The Gst Family In Anopheles (Nyssorhynchus) Darlingi. Acta Tropica, V. 136, P. 27-31, 2014

Mantello, Camila Campos ; Cardoso-Silva, Claudio Benicio ; Da Silva, Carla Cristina ; De Souza, Livia Moura ; Scaloppi Junior, Erivaldo José ; De Souza Gonçalves, Paulo ; Vicentini, R ; De Souza, Anete Pereira . De Novo Assembly And Transcriptome Analysis Of The Rubber Tree (Hevea Brasiliensis) And Snp Markers Development For Rubber Biosynthesis Pathways. Plos One, V. 9, P. E102665, 2014

De Setta, Nathalia Monteiro-Vitorello, Cláudia Barros Metcalfe, Cushla Jane Cruz, Guilherme Marcelo Del Bem, Luiz Eduardo, Vicentini R, Nogueira, Fábio Tebaldi Campos, Roberta Alvares Nunes, Sideny Lima Turrini, Paula Cristina Vieira, Andreia Prata Ochoa Cruz, Edgar Andrés Corrêa, Tatiana Caroline Hotta, Carlos Takeshi De Mello Varani, Alessandro Vautrin, Sonia Da Trindade, Adilson Silva De Mendonça Vilela, Mariane Lembke, Carolina Gimiliani Sato, Paloma Mieko De Andrade, Rodrigo Fandino Nishiyama, Milton Yutaka Cardoso-Silva, Claudio Benicio Scortecci, Katia Castanho Garcia, Antônio Augusto , Et Al. ; Building The Sugarcane Genome For Biotechnology And Identifying Evolutionary Trends. Bmc Genomics, V. 15, P. 540, 2014

2013

Ortiz-Morea, F. A. ; Vicentini, R ; Silva, G. F. F. ; Silva, E. M. ; Carrer, H. ; Rodrigues, A. P. ; Nogueira, F. T. S. . Global Analysis Of The Sugarcane Microtranscriptome Reveals A Unique Composition Of Small Rnas Associated With Axillary Bud Outgrowth. Journal Of Experimental Botany, V. 1, P. 120, 2013

Duarte, G. T. ; Matiolli, C. C. ; Pant, B. D. ; Schlereth, A. ; Scheible, W.-R. ; Stitt, M. ; Vicentini, R; Vincentz, M. . Involvement Of Microrna-Related Regulatory Pathways In The Glucose-Mediated Control Of Arabidopsis Early Seedling Development. Journal Of Experimental Botany (Online), V. 1, P. 1, 2013

Garcia, Antonio A. F. Mollinari, Marcelo Marconi, Thiago G. Serang, Oliver R. Silva, Renato R. Vieira, Maria L. C. Vicentini, Renato Costa, Estela A. Mancini, Melina C. Garcia, Melissa O. S. Pastina, Maria M. Gazaffi, Rodrigo Martins, Eliana R. F. Dahmer, Nair Sforça, Danilo A. Silva, Claudio B. C. Bundock, Peter Henry, Robert J. Souza, Glaucia M. Van Sluys, Marie-Anne Landell, Marcos G. A. Carneiro, Monalisa S. Vincentz, Michel A. G. Pinto, Luciana R. Vencovsky, Roland , Vicentini, R , et al. ; Snp Genotyping Allows An In-Depth Characterisation Of The Genome Of Sugarcane And Other Complex Autopolyploids. Scientific Reports, V. 3, P. 3399, 2013

Bottcher, A. ; Cesarino, I. ; Brombini Dos Santos, A. ; Vicentini, R; Mayer, J. L. S. ; Vanholme, R. ; Morreel, K. ; Goeminne, G. ; Moura, J. C. M. S. ; Nobile, P. M. ; Carmello-Guerreiro, S. M. ; Antonio Dos Anjos, I. ; Creste, S. ; Boerjan, W. ; Landell, M. G. D. A. ; Mazzafera, P. . Lignification In Sugarcane: Biochemical Characterization, Gene Discovery, And Expression Analysis In Two Genotypes Contrasting For Lignin Content. Plant Physiology (Bethesda), V. 163, P. 1539-1557

Marinotti O, Cerqueira GC, de Almeida LGP, Ferro MIT, Loreto EL, Zaha A, Teixeira SMR, Wespiser AR, Almeida e Silva A, Schlindwein AD, Pacheco ACL, Costa da Silva AL, Graveley BR, Walenz BP, Lima BA, Ribeiro CAG, Nunes-Silva CG, Carvalho CR, Soares CMA, Menezes CBA, Matiolli C, Caffrey D, Araújo DAM, Oliveira DM, Golenbock D, Grisard EC, Fantinatti-Garboggini F, Carvalho FM, Barcellos FG, Prosdocimi F, May G, Azevedo GM, Guimarães GM, Goldman GH, Padilha IQM, Batista JS, Ferro JA, Ribeiro JMC, Fietto JLR, Dabbas KM, Cerdeira L, Agnez-Lima LF, Brocchi M, Carvalho MO, Teixeira MM, Maia MMD, Goldman MH, Schneider MPC, Felipe MSS, Hungria M, Nicolás MF, Pereira M, Montes MA, Cantão ME, Vincentz M, Rafael MS, Silverman N, Stoco PH, Souza RC, Vicentini, R, Gazzinelli RT, Neves RO, Silva R, Astolfi-Filho S, Maciel TEF, Ürményi TP, Tadei WP, Camargo EP, and Vasconcelos ATR (2013) The Genome of Anopheles darlingi, the main neotropical malaria vector. Nucleic Acids Research. first published online June 12.

Ortiz-Morea, FA; Vicentini, R; Silva, GF.; Silva, EM.; Carrer, H.; Rodrigues, AP.; Nogueira, FTS. (2013) Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth. Journal of Experimental Botany. 64(8): 2307 - 2320.

Silva, CC.; HayDEN, H.; Sawbridge, T.; Mele, P.; de Paula, SO.; Silva, LCF.; Vidigal, PMP.; Vicentini, R; Souza, MP.; Torres, APR.; Santiago, VMJ., Oliveira, VM. (2013) Identification of Genes and Pathways Related to Phenol Degradation in Metagenomic Libraries from Petroleum Refinery Wastewater. Plos One, 8, e61811.

Cesarino, I; Araújo, P; Mayer, JLS; Vicentini, R; Berthet, S; Demedts, B; Vanholme, B; Boerjan, W; Mazzafera, P (2013) Expression of SofLAC, a new laccase in sugarcane, restores lignin content but not S:G ratio of Arabidopsis lac17 mutant. Journal of Experimental Botany. 64(6): 1769-1781.

2012

Vicentini, R; Del Bem, LEV; Van Sluys, MA; Nogueira, FTS; Vincentz, M (2012) Gene content analysis of sugarcane public ESTs reveals thousands of missing coding-genes and an unexpected pool of grasses conserved ncRNAs. Tropical Plant Biology. 5(2): 199-205.

Domingues, DS; Cruz, GMQ; Metcalfe, CJ; Nogueira, FTS; Vicentini, R; Alves, CS; Van Sluys, MA. (2012) Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns. BMC Genomics. 13: 137.

Ribeiro, DA.; Ferraz, LFC; Vicentini, R.; Ottoboni, LMM. (2012) Gene expression modulation by heat stress in Acidithiobacillus ferrooxidans LR. Antonie van Leeuwenhoek, 101, 583-593.

2011

Ferraz, LFC; Verde, LCL; Vicentini, R; Felício, AP; Ribeiro, ML; Alexandrino, F; Novo, MTM; Garcia, O; Rigden, DJ; Ottoboni, LMM. (2011) Ferric iron uptake genes are differentially expressed in the presence of copper sulfides in Acidithiobacillus ferrooxidans strain LR. Antonie van Leeuwenhoek , 99, 609-617.

Ossa, DMH; Oliveira, RR; Murakami, MT; Vicentini, R.; Costa-Filho, AJ; Alexandrino, F; Ottoboni, LMM; Garcia, O. (2011) Expression, purification and spectroscopic analysis of an HdrC: An iron sulfur cluster-containing protein from Acidithiobacillus ferrooxidans. Process Biochemistry, 46, 1335-1341.

Ribeiro, DA; Del Bem, LEV; Vicentini, R; Ferraz, LFC; Murakami, MT; Ottoboni, LMM. (2011) The small heat shock proteins from Acidithiobacillus ferrooxidans: gene expression, phylogenetic analysis and structural modeling. BMC Microbiology, 11, 259.

2010

Zanca, AS; Vicentini, R; Ortiz-Morea, FA; Del Bem, LEV; Silva, MJ.; Vincentz, M.; Nogueira, FTS. (2010) Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane. BMC Plant Biology, 10: 260.

Costa, GL; Cardoso, KC; Del Bem, LEV; Lima, AC; Cunha, MAS; Campos-Leite, L; Vicentini, R; Papes, F; Moreira, RC; Yunes, JA; Campos, FAP; Da Silva, MJ. (2010) Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas L. BMC Genomics, 11, 462.

Reis, FC; Madureira, DJ; Vicentini, R; Carlos, C; Ferraz, LFC; Garcia, O; Ottoboni, LMM. (2010) Transporter protein genes are differentially expressed in Acidithiobacillus ferrooxidans LR maintained in contact with covellite. World Journal of Microbiology & Biotechnology, 26, 2061-2068.

2009

Vicentini, R; Menossi, M. (2009) The predicted subcellular localisation of the sugarcane proteome. Functional Plant Biology, 36, 242-250.

Vicentini, R; Felix, JM; Dornelas, MC; Menossi, M (2009) Characterization of a sugarcane (Saccharum spp.) gene homolog to the brassinosteroid insensitive1-associated receptor kinase 1 that is associated to sugar content. Plant Cell Reports, 28, 481-491.

Papini-Terzi, FS; Rocha, F; Vencio, R.; Felix, JM; Branco, D.; Waclawovsky, A; Del Bem, L; Lembke, C; Costa, M; Nishiyama, M; Vicentini, R; Vincentz, M; Ulian, EC; Menossi, M; Souza, G (2009) Sugarcane genes associated with sucrose content. BMC Genomics; 10, 120.

Felix, J; Papini-Terzi, FS; Rocha, F; Vêncio, R; Vicentini, R; Nishiyama, M; Ulian, EC; Souza, G; Menossi, M (2009) Expression Profile of Signal Transduction Components in a Sugarcane Population Segregating for Sugar Content. Tropical Plant Biology; 2, 98-109.

2008

Knegt, F; Mello, L; Reis, F; Santos, M; Vicentini, R; Ferraz, L; Ottoboni, L (2008) ribB and ribBA genes from Acidithiobacillus ferrooxidans: expression levels under different growth conditions and phylogenetic analysis. Research in Microbiology, 159, 423-431.

Corrêa, L; Riaño-Pachón, D; Schrago, C; Vicentini, R; Mueller-Roeber, B; Vincentz, M; Shiu, S (2008) The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes, PLoS one, 3, e2944.

Souza, A; Gaspar, M; da Silva, E; Ulian, E; Waclawosky, A; Nishiyama, M; Vicentini, R; Menossi, M; Souza, G; Buckeridge, M (2008) Elevated CO increases photosynthesis, biomass and productivity, and modifies gene expression in sugarcane. Plant, Cell and Environment, 31, 1116-1127.

Carlos, C; Reis, F; Vicentini, R; Madureira, D; Ottoboni, L. (2008) The rus Operon Genes Are Differentially Regulated When Acidithiobacillus ferrooxidans LR is Kept in Contact with Metal Sulfides. Current Microbiology, 57, 375-380.

2007

Schlögl, P; Nogueira, F; Drummond, R; Felix, J; Rosa, V; Vicentini, R; Leite, A; Ulian, E; Menossi, M. (2008) Identification of new ABA- and MEJA-activated sugarcane bZIP genes by data mining in the SUCEST database. Plant Cell Reports, 27, 335-345.

Vicentini, R; Menossi, M. (2007) TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets. BMC Bioinformatics, 8, 160.

Vicentini, R; Menossi, M. (2007) Pipeline for macro- and microarray analyses. Brazilian Journal of Medical and Biological Research, 40, 615-619.

Rocha, F; Papini-Terzi, F; Nishiyama, M; Vencio, R; Vicentini, R; Duarte, M; Vinagre, F; Ulian, E; Zingaretti, S; Almedia, R; Figueira, A; Hemerly, A; Silva-Filho, M; Menossi, M; Souza, G. (2007) Signal transduction-related responses to phytohormones and environmental challenges in sugarcane. BMC Genomics, 8, 71.

2005

Papini-Terzi, R; Riso, F; Vencio, R; Oliveira, K; Felix, JM; Vicentini, R.; Rocha, C; Simoes, A; Ulian, E; Zingaretti, S; Silva, A; Pereira, C; Menossi, M; Souza, G. (2005) Transcription Profiling of Signal Transduction-Related Genes in Sugarcane Tissues. DNA Research, 12, 27-38.

Vicentini, R; Sassaki, F; Gimenes, M; Maia, I; Menossi, M. (2005) In silico evaluation of the Eucalyptus transcriptome. Genetics and Molecular Biology, 28, 487-495.

2001

Nogueira, E; Vinagre, F; Masuda, H; Vargas, C; de Pauda, V; da Silva, F; Vicentini, R.; Baldani, J; Ferreira, P; Hemerly, A. (2001) Expression of sugarcane genes induced by inoculation with Gluconacetobacter diazotrophicus and Herbaspirillum rubrisubalbicans. Genetics and Molecular Biology, 24, 199-206.

Figueiredo, R; Brito, M; Figueiredo, L; Quiapin, A; Vitorelli, P; Silva, L; Vicentini, R; Molfetta, J; Goldman, G; Goldman, M. (2001) Dissecting the sugarcane expressed sequence tag (SUCEST) database: unraveling flower-specific genes. Genetics and Molecular Biology, 24, 77-84.