2022 Research Projects

Comparison of Broccolini Varieties - Yield and Other Key Traits

Lizbeth Salamanca 

Home Institution: Oregon State University

Faculty Mentor: Dr. Cindy Tong

Regarded as a newer crop, broccolini has actually been around since the 1910s. Sakata Seed Inc. developed broccolini with the intention that the crop would be more heat resistant and provide a longer yield period than its plant parents. Broccolini is a cross between traditional broccoli and gai lan. It is distinguishable by its long stem and petite head. The broccolini varieties selected for this study were: Sweet Stem, Melody, Happy Rich, and BC 1611. The objective of this study was to compare overall yield, disease susceptibility, bolting, earliness, and longevity among varieties. The broccolini types varied in size. Stalks of broccolini were uniform in shape for each variety, but stalks of each variety were easily distinguishable. The yield was comparable between varieties, but the start of the harvesting period varied by one to two weeks, and harvests stopped altogether. The flowering characteristics of the crop were unique. BC 1611 flowers were yellow, while those of the other varieties were white. Pests were limited until week five, when all rows were afflicted with a flea beetle infestation that prevented further harvests due to predation on stalks. Ultimately, this study provided some initial data on which to base future studies.

Cover crops are a useful tool for farmers and provide benefits such as improving soil structure, nutrient cycling, and water infiltration. However, in the Upper Midwest long and cold winters limit time that a cover crop is in production, resulting in decreased biomass quantity. The objective of our work is to assess the extent to which soil hydrolytic extracellular enzymes change based on a warm season cover cropping treatment during the decomposition process from 0 to 90 days after termination. Given that cover crops can be an added nutrient source, we hypothesized that hydrolytic enzymes in cover cropped, and weedy plots would increase during the decomposition process. Our experiment included five cover cropping treatments: Crimson Clover, Buckwheat, Pea/Oat, weedy fallow, and weed-free fallow. Soil samples were collected at the following dates post cover crop termination: 0, 30, 60, and 90 days. To test for soil enzyme activity, we used a fluorometric approach quantifying four hydrolytic enzymes: beta-glucosidase (BG), cellobiohydrolase (C), phosphatase (P), and N-acetyl glucosaminidase (NAG). Findings indicate that enzyme activity is correlated with soil moisture percent and peak enzyme activity is 90 days following cover crop termination.

Effect of Warm Season Cover Crop Decomposition on Soil Enzyme Activity in an Organic Vegetable System

Oliver Hoffman

Home Institution: Colorado State University

Mentor: Gabriela Hidrobo

Faculty Mentor: Dr. Julie Grossman

Does removing flowers and runners from day-neutral strawberry plants affect fruit production?

Karen Joy (DeJesus)

Home Institution: Red Lake Nation College

Faculty Mentor: Dr. Mary Rogers

Strawberries (Fragaria x ananassa L.) (Ojibwe word: Ode-imin) are a lucrative but labor-intensive crop, which pressures producers to meet the growing consumer demand. Day-neutral (DNS) cultivars offer a longer harvest season, with the first flush of fruit in late June and continuing to produce until the first frost. DNS yield five times the amount of traditional June-bearing varieties and thereby deliver greater monetary earnings.  Due to these reasons, DNS have advantages over traditional June-bearing plants.  In this experiment, we tested the industry recommendation of  removing flowers and runners for the first month after planting,tracked the time of harvest, and storage containers for post-harvest longevity. We compared fruit acidity and total soluble solid content between morning and afternoon harvests and found that the time of day does not significantly affect these fruit quality measurements. We did see a significant effect of storage container and temperature on berry shelf life, with 1 °C and sealed containers lasting longer than ventilated clamshells or 21 °C treatments. At the end of the season, we will compare the results in overall yield between removal treatments to determine if this step is necessary for growers or if labor hours can be reduced.

Potato is the world's fourth most important crop following rice, wheat, and maize. According to USDA statistics, Minnesota potato production in 2020 totaled 17.9 million cwt, ranked 6th nationally in potato production. Uncovering the genetic basis of agronomic traits in potatoes (Solanum tuberosum L.) is crucial for potato breeding. Genome-Wide Association Study (GWAS) is a research method used to identify genomic variants associated with a particular trait. To discover genetic architecture governing key agronomic traits in potatoes, yield and yield components, hollow heart presence, specific gravity, skin color, skinning, skin lightness, tuber roundness, and tuber length width ratio were evaluated for 133 potato varieties from the year 2021 at the University of Minnesota Sand Plains Research Farm in Becker, MN. The panel of varieties was genotyped using the Potato V4 Infinium single-nucleotide polymorphism (SNP) marker array. 19,481 high-quality SNPs were used to identify loci associated with agronomic traits using GWAS. Additive, 1-dominant, and 2-dominant models were tested for each trait with the R package GWASpoly. QQplot was used to evaluate the performance of each model. We have identified two markers associated with tuber weight on chromosome 4. We plan to calculate broad-sense heritability and get functional annotations of identified markers.

Genome-Wide Association Study of Agronomic Traits in Potato (Solanum tuberosum L.)

Re'Nyah Vincent

Home Institution: University of Arkansas at Pine Bluff

Faculty Mentor: Dr. Laura Shannon

Hmong Medicinal Plants

Adiel Andino

Home Institution: University of Puerto Rico, Utuado

Faculty Mentor: Natalie Hoidal/Ya Yang

In this undergraduate research project we are seeking to identify certain medicinal plants that are used in the Hmong culture for the postpartum chicken soup diet.  In this process, we collected the young leaves of medicinal herbs grown at Big River Farms and dried  them in silica. We also collected the whole plant as a voucher specimen.  We then performed DNA extractions. To identify the plant species, we have to do the PCR (Polymerase Chain Reaction), to amplify genetic material that is species-specific. Rbcl and ITS are the parts of the genome we amplify. To confirm PCR success, we have to run a gel. Successful PCR reactions were sequenced by GeneWiz (Azenta Life Sciences).  DNA sequences were analyzed in Geneious and compared to existing sequences in GenBank via BLASTn and phylogenetic analysis with RAxML. Preliminary data exhibits a total of eleven species that were identified to the genus level.

Urban agriculture is a valuable resource, as it provides a variety of environmental, economic and social benefits to its surrounding communities. However, urban soils have a higher risk of anthropogenic lead (Pb) contamination, which can dramatically change soil properties and influence human health. Prior studies have indicated that soil phosphorus influences soil lead speciation, which impacts how much lead is taken up by plants and animals. Thus, the objective of this study was to evaluate lead and phosphorus concentration in urban soils throughout Minneapolis and St. Paul, and determine whether or not they vary by land use. Soil samples (0-20 cm) were collected in triplicate from food producing and non-food producing sites (such as lawns, parks, and boulevards). Information on the association between lead and phosphorus in gardens and lawns can improve guidance on healthy management practices for urban growers.

Phosphorous and Lead in Urban Soils: Connecting Data to Community Applications in Minneapolis/St. Paul, MN

Zoe Barany

Home Institution: Augsburg University

Faculty Mentor: Dr. Nic Jelinski

Use of machine learning to identify potato scab

Eleojo Nathanie

Home Institution: Minnesota State University Mankato

Faculty Mentor: Dr. Laura Shannon

Potatoes are extremely important as one of the most consumed crops in the world. Common scab is a disease of potato tuber skin that reduces the quality and marketability of the crop. The disease is caused by the bacteria Streptomyces, that is found in the soil. Disease incidence and severity may vary due to factors including the location, soil PH and soil moisture. The disease occurs worldwide wherever potatoes are grown. The symptoms of potato common scab are variable and occur on the surface of the tuber. The disease forms three types of corklike lesions: surface,raised and pitted lesions. Detecting and identifying defects in potatoes continues to be an important challenge for food engineering and automation. The reason for identifying scab is to breed healthier potatoes and better study the disease and ways of preventing it. We are using machine learning to identify scab as we have found it is efficient in terms of accuracy and results. We identified scab through the aid of machine learning using the Random Forest classifier in the Trainable Weka Segmentation plugin in ImageJ2 / FIJI. We classified 65 training images. Model accuracy was determined using a test set from the data.

Perennial ryegrass is very commonly used in athletic fields because of its high wear tolerance. Like other grasses and monocultures, perennial ryegrass requires many inputs such as nitrogen fertilization and intense irrigation practices. Nitrification leads to ammonium being converted to nitrite and nitrate via natural microbial processes, thus requiring more fertilizer. Nitrate can then be lost via water drainage, causing leaching to occur and thus, loss of available nitrogen and ground water pollution. Denitrification also occurs when nitrate is present due to bacteria converting nitrate to atmospheric nitrogen. However, Biological Nitrification Inhibitors (BNIs), which naturally hinder nitrification by secreting exudates which keep nitrogen soil-bound as ammonium, have been found in many forage grasses. The potential BNI capacity of New Zealand perennial ryegrass was evaluated by planting two sets of seven accessions and growing them from seed. The assay was based around recording the time point after a soil slurry solution was added to soil samples from each plant, and then after centrifuging, the supernatant was evaluated in the lab. Going forward, further experimentation and data can be used to ascertain which accessions have the best BNI capacity. Furthermore, recommendations can be given as to which grass accessions reduce nitrogen use.

Evaluating the Potential Biological Nitrification Inhibition in New Zealand Ryegrass Accessions

Zade Alafranji

Home Institution: University of Minnesota

Faculty Mentor: Dr. Eric Watkins