BcLR Publications

The changing microbial epidemiology in cystic fibrosis

LiPuma JJ

Clin Microbiol Rev. 2010 Apr;23(2):299-323. doi: 10.1128/CMR.00068-09

Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax  

LiPuma JJ, Currie BJ, Baird RW, Vandamme PAR

[Chapter] In: Manual of Clinical Microbiology, 13th Edition. ASM Press, Washington, DC. 2023

Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients

LiPuma JJ, Dulaney BJ, McMenamin JD, Whitby PW, Stull TL, Coenye T, Vandamme P

J Clin Microbiol. 1999 Oct;37(10):3167-70. doi: 10.1128/JCM.37.10.3167-3170.1999

Species-specific PCR as a tool for the identification of Burkholderia gladioli.

Whitby PW, Pope LC, Carter KB, LiPuma JJ, Stull TL

J Clin Microbiol. 2000 Jan;38(1):282-5. doi: 10.1128/JCM.38.1.282-285.2000

DNA-Based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III

Mahenthiralingam E, Bischof J, Byrne SK, Radomski C, Davies JE, Av-Gay Y, Vandamme P

J Clin Microbiol. 2000 Sep;38(9):3165-73. doi: 10.1128/JCM.38.9.3165-3173.2000 (Publication outside of  BcLR.)

Identification and detection of Stenotrophomonas maltophilia by rRNA-directed PCR

Whitby PW, Carter KB, Burns JL, Royall JA, LiPuma JJ, Stull TL

J Clin Microbiol. 2000 Dec;38(12):4305-9. doi: 10.1128/JCM.38.12.4305-4309.2000

Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates

Coenye T, Mahenthiralingam E, Henry D, LiPuma JJ, Laevens S, Gillis M, Speert DP, Vandamme P

Int J Syst Evol Microbiol. 2001 Jul;51(Pt 4):1481-1490. doi: 10.1099/00207713-51-4-1481

Identification of Pandoraea species by 16S ribosomal DNA-based PCR assays.

Coenye T, Liu L, Vandamme P, LiPuma JJ

J Clin Microbiol. 2001 Dec;39(12):4452-5. doi: 10.1128/JCM.39.12.4452-4455.2001

Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients

Liu L, Coenye T, Burns JL, Whitby PW, Stull TL, LiPuma JJ

J Clin Microbiol. 2002 Apr;40(4):1210-3. doi: 10.1128/JCM.40.4.1210-1213.2002

Infection by Ralstonia species in cystic fibrosis patients: identification of R. pickettii and R. mannitolilytica by polymerase chain reaction

Coenye T, Vandamme P, LiPuma JJ

Emerg Infect Dis. 2002 Jul;8(7):692-6. doi: 10.3201/eid0807.010472

Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III

Coenye T, Spilker T, Martin A, LiPuma JJ

J Clin Microbiol. 2002 Sep;40(9):3300-7. doi: 10.1128/JCM.40.9.3300-3307.2002

Classification of Ralstonia pickettii-like isolates from the environment and clinical samples as Ralstonia insidiosa sp. nov.

Coenye T, Goris J, De Vos P, Vandamme P, LiPuma JJ

Int J Syst Evol Microbiol. 2003 Jul;53(Pt 4):1075-1080. doi: 10.1099/ijs.0.02555-0

Ralstonia respiraculi sp. nov., isolated from the respiratory tract of cystic fibrosis patients.

Coenye T, Vandamme P, LiPuma JJ

Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1339-1342. doi: 10.1099/ijs.0.02440-0

Proposal to accommodate Burkholderia cepacia genomovar VI as Burkholderia dolosa sp. nov

Vermis K, Coenye T, LiPuma JJ, Mahenthiralingam E, Nelis HJ, Vandamme P

Int J Syst Evol Microbiol. 2004 May;54(Pt 3):689-691. doi: 10.1099/ijs.0.02888-0

PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients

Spilker T, Coenye T, Vandamme P, LiPuma JJ

J Clin Microbiol. 2004 May;42(5):2074-9. doi: 10.1128/JCM.42.5.2074-2079.2004

Use of PCR analyses to define the distribution of Ralstonia species recovered from patients with cystic fibrosis

Coenye T, Spilker T, Reik R, Vandamme P, LiPuma JJ

J Clin Microbiol. 2005 Jul;43(7):3463-6. doi: 10.1128/JCM.43.7.3463-3466.2005

Identification and distribution of Achromobacter species in cystic fibrosis

Spilker T, Vandamme P, LiPuma JJ

J Cyst Fibros. 2013 May;12(3):298-301. doi: 10.1016/j.jcf.2012.10.002

A simplified sequence-based identification scheme for Bordetella reveals several putative novel species

Spilker T, Leber AL, Marcon MJ, Newton DW, Darrah R, Vandamme P, LiPuma JJ

J Clin Microbiol. 2014 Feb;52(2):674-7. doi: 10.1128/JCM.02572-13

Burkholderia

Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients.

Coenye T, LiPuma JJ, Henry D, Hoste B, Vandemeulebroecke K, Gillis M, Speert DP, Vandamme P.

Int J Syst Evol Microbiol. 2001 Mar;51(Pt 2):271-9. doi: 10.1099/00207713-51-2-271

Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates

Coenye T, Mahenthiralingam E, Henry D, LiPuma JJ, Laevens S, Gillis M, Speert DP, Vandamme P

Int J Syst Evol Microbiol. 2001 Jul;51(Pt 4):1481-1490. doi: 10.1099/00207713-51-4-1481

Proposal to accommodate Burkholderia cepacia genomovar VI as Burkholderia dolosa sp. nov

Vermis K, Coenye T, LiPuma JJ, Mahenthiralingam E, Nelis HJ, Vandamme P

Int J Syst Evol Microbiol. 2004 May;54(Pt 3):689-691. doi: 10.1099/ijs.0.02888-0

Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex

Vanlaere E, LiPuma JJ, Baldwin A, Henry D, De Brandt E, Mahenthiralingam E, Speert D, Dowson C, Vandamme P

Int J Syst Evol Microbiol. 2008 Jul;58(Pt 7):1580-90. doi: 10.1099/ijs.0.65634-0

Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov

Vanlaere E, Baldwin A, Gevers D, Henry D, De Brandt E, LiPuma JJ, Mahenthiralingam E, Speert DP, Dowson C, Vandamme P

Int J Syst Evol Microbiol. 2009 Jan;59(Pt 1):102-11. doi: 10.1099/ijs.0.001123-0

Burkholderia pseudomultivorans sp. nov., a novel Burkholderia cepacia complex species from human respiratory samples and the rhizosphere

Peeters C, Zlosnik JE, Spilker T, Hird TJ, LiPuma JJ, Vandamme P

Syst Appl Microbiol. 2013 Oct;36(7):483-9. doi: 10.1016/j.syapm.2013.06.003

Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil

Vandamme P, De Brandt E, Houf K, Salles JF, Dirk van Elsas J, Spilker T, LiPuma JJ

Int J Syst Evol Microbiol. 2013 Dec;63(Pt 12):4707-4718. doi: 10.1099/ijs.0.048900-0 

Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources

De Smet B, Mayo M, Peeters C, Zlosnik JEA, Spilker T, Hird TJ, LiPuma JJ, Kidd TJ, Kaestli M, Ginther JL, Wagner DM, Keim P, Bell SC, Jacobs JA, Currie BJ, Vandamme P

Int J Syst Evol Microbiol. 2015 Jul;65(7):2265-2271. doi: 10.1099/ijs.0.000251 

Burkholderia cepacia complex Taxon K: Where to split?

Depoorter E, De Canck E, Peeters C, Wieme AD, Cnockaert M, Zlosnik JEA, LiPuma JJ, Coenye T, Vandamme P

Front Microbiol. 2020 Jul 14;11:1594. doi: 10.3389/fmicb.2020.01594. eCollection 2020

Achromobacter

Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples

Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ

Syst Appl Microbiol. 2013 Feb;36(1):1-10. doi: 10.1016/j.syapm.2012.10.003

Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively

Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ

Syst Appl Microbiol. 2013 Oct;36(7):474-82. doi: 10.1016/j.syapm.2013.06.005

Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov

Vandamme PA, Peeters C, Cnockaert M, Inganäs E, Falsen E, Moore ERB, Nunes OC, Manaia CM, Spilker T, LiPuma JJ

Int J Syst Evol Microbiol. 2015 Oct;65(10):3674-3682. doi: 10.1099/ijsem.0.000473

Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011

Vandamme PA, Peeters C, Cnockaert M, Gomila M, Moore ERB, Spilker T, LiPuma JJ

Int J Syst Evol Microbiol. 2016 Apr;66(4):1641-1644. doi: 10.1099/ijsem.0.000872

Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov

Vandamme PA, Peeters C, Inganäs E, Cnockaert M, Houf K, Spilker T, Moore ERB, LiPuma JJ

Int J Syst Evol Microbiol. 2016 Sep;66(9):3708-3717. doi: 10.1099/ijsem.0.001254

Bordetella

Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov

Vandamme PA, Peeters C, Cnockaert M, Inganäs E, Falsen E, Moore ERB, Nunes OC, Manaia CM, Spilker T, LiPuma JJ

Int J Syst Evol Microbiol. 2015 Oct;65(10):3674-3682. doi: 10.1099/ijsem.0.000473