Publications 

Hernández-Jiménez S.A., Aguilar-Medrano R., Martínez-Aquino A., F. Sara Ceccarelli. 2025. Inter- and intraspecific morphological variation in the honeypot ants (Formicidae: Myrmecocystus) from Pacific coastal dunes of Baja California, Mexico (ISSN: 0720‑213X (print), 1432‑234X  (online)). Zoomorphology 144:30 (FI = 1.1; Q2). https://doi.org/10.1007/s00435-025-00718-2 

Martínez-Aquino A., García-Teh GJ., Ceccarelli FS., Aguirre-Macedo ML., Vidal-Martínez VM, 2023. Integrative taxonomy of Serrasentis gibsoni n. sp. (Acanthocephala: Isthmosacanthidae) from flatfishes in the Gulf of Mexico (ISSN: 0022149X (print), 14752697 (online)). Journal of Helminthology 97 e96, 1–17 (FI = 1.6; Q2). https://doi.org/10.1017/S0022149X23000822

Chan-Martin AJ, Castellanos-Martínez S, Aguirre-Macedo Ma. L., Martínez-Aquino A. 2022. Immature trematodes of Lecithochirium sp. (Digenea: Hemiuridae) in the California two‑spot octopus (Octopus bimaculatus) from Mexico (ISSN: 09320113 print; 14321955 online). Parasitology Research 121 (12): 2651–2660 (FI = 2.4; Q2). https://doi.org/10.1007/s00436-022-07590-9

Colunga-Ramírez GE, Martínez-Aquino A, Flores-López CA, Gestal C, Azevedo C, Castellanos-Martíneza S. 2021. Aggregata polibraxiona n. sp. (Apicomplexa: Aggregatidae) from Octopus bimaculatus Verrill, 1883 (Mollusca: Cephalopoda) from the Gulf of California, Mexico (ISSN: 0932-4739 print; 1618-0429 online). European Journal of Protistology 81: 125825 (FI = 3.02; Q2). https://doi.org/10.1016/j.ejop.2021.125825

Lenguas Francavilla M, Negrete L, Martínez-Aquino A, Damborenea C, F. Brusa. 2021. Two new freshwater planarian species (Platyhelminthes: Tricladida: Dugesiidae) partially sympatric in Argentinean Patagonia (ISSN: 0008-4301 print; 1480-3283 online) Canadian Journal of Zoology 99: 269–278 (FI = 1.645; Q1). https://doi.org/10.1139/cjz-2020-0169

Paredes-Trujillo A., Martínez-Aquino A., Rodiles-Hernández R., González-Solís D. 2020. Metazoan parasite communities of three endemic cichlid fish species from the upper Grijalva River, Chiapas, Mexico (ISSN: 1336-9083 print; 1336-9083 online) Helminthologia 57 (4): 344–352 (FI = 0.674; Q3).  https://doi.org/10.2478/helm-2020-0041

Martínez-Aquino A., García-Teh GJ., Ceccarelli FS., Aguilar-Aguilar R., Vidal-Martínez VM, Aguirre-Macedo ML. 2020. New morphological and molecular data for Xystretrum solidum (Gorgoderidae, Gorgoderinae) from Sphoeroides testudineus (Tetraodontiformes, Tetraodontidae) in Mexican waters (ISSN: 1313-2989 print; 1313-2970 online) ZooKeys 925: 141–161 (FI = 1.14; Q2) https://doi.org/10.3897/zookeys.925.49503 

Martínez-Aquino A, Vidal-Martínez VM, Ceccarelli FS, Méndez O, Soler-Jiménez LC, Aguirre-Macedo ML. 2020. Phylogeny, genetics, and the partial life cycle of Oncomegas wageneri in the Gulf of Mexico. (ISSN: 16745507 print; 23969814 online) Current Zoology 66 (3): 275–283 (FI = 2.4; Q1) https://doi.org/10.1093/cz/zoz045

Aguilera-Molina VM., Munguía-Ortega KK., López-Reyes E., Martínez-Aquino A, Ceccarelli FS. 2019. Climate change and forest plagues: assessing current and future impacts of diprionid sawflies on the pine forests of north-western Mexico. PeerJ 7:e7220 (FI = 2.2; Q1) (ISSN 21678359 online) http://dx.doi.org/10.7717/peerj.7220

Aguilar-Aguilar R., Ruíz-Campos G., Martorelli S., Montes M. and A. Martínez-Aquino. 2019. A new species of Ascarophis (Nematoda: Cystidicolidae) parasitizing Clinocottus analis (Pisces: Cottidae) from Baja California, Mexico. Journal of Parasitology (Print ISSN: 00223395 / Online 19372345) (FI = 1.405; Q2) 105 (4): 524–532. http://dx.doi.org/10.1645/19-14

Martínez-Aquino A., Chan-Martin AJ, García-The GJ, Ceccarelli FS and Aguirre-Macedo Ma L. 2019. Metacercariae of Haplorchis pumilio (Looss, 1896) in Carassius auratus (Linnaeus, 1758) from Mérida City, Yucatán, Mexico: a co-introduced parasite. BioInvasions Records (Online 22421300 electronic version) (FI = 1.198; Q2) 8 (3): 712–728 https://doi.org/10.3391/bir.2019.8.3.29

May-Tec*, A.L., A. Martínez-Aquino*, Aguirre-Macedo Ma.L., and V.M. Vidal-Martínez. 2019. Molecular evidence linking the larval and adult stages of Mexiconema cichlasomae (Dracunculoidea: Daniconematidae) from Celestun, México, with notes on its phylogenetic position among Dracunculoidea. 93 (5): 580–588. (ISSN: 0022149X (print), 14752697 (online)) Journal of Helminthology (FI = 1.6; Q2) * = equal contribution http://dx.doi.org/10.1017/S0022149X18000524

Martínez-Aquino, A., V.M. Vidal-Martínez and Ma. L. Aguirre-Macedo. 2017. A molecular phylogenetic appraisal of the acanthostomines Acanthostomum and Timoniella and their position within Cryptogonimidae (Trematoda: Opisthorchioidea). PeerJ (FI = 2.2; Q1) (ISSN 21678359 online)

PeerJ 5:e4158 http://dx.doi.org/10.7717/peerj.4158

Martínez-Aquino, A., J. Vigliano-Relva, F. Brusa and C. Damborenea. 2017. Historical biogeography of Temnocephalida (Platyhelminthes, Rhabdocoela): testing the Gondwanan hypothesis (ISSN 1477-2000 print / 1478-0933 online). Systematics and Biodiversity. 15(4): 327–345. ISSN: 1477-2000; 1478-0933 (online) (FI = 2.2; Q1) http://dx.doi.org/10.1080/14772000.2016.1252441

Aguirre-Macedo Ma. L., A.L. May-Tec, A. Martínez-Aquino, F. Cremonte and S.R. Martorelli 2017. Diversity of helminth parasites in aquatic invertebrate hosts in Latin America: How much do we know? (ISSN: 0022-149X (print), 1475-2697 (online) Journal of Helminthology 92 (2): 137-149. (FI = 1.6; Q2) http://dx.doi.org/10.1017/S0022149X16000547

Castro, R., M. Montes, S. Martorelli, D. Sepulveda, S. Tapia and A. Martínez-Aquino. 2016. Integrative taxonomy of Peniculus, Metapeniculus and Trifur (Siphonostomatoida: Pennellidae), copepod parasites of marine fishes from Chile: species delimitation analyses using DNA barcoding and morphological evidence. (ISSN: 1477-2000 print / ISSN: 1478-0933 online). Systematics and Biodiversity 14 (5): 466-483. (FI = 2.2; Q1)

http://www.tandfonline.com/doi/abs/10.1080/14772000.2016.1158213#.VzeSzb71aY8

Martínez-Aquino, A. 2016. Phylogenetic framework for coevolutionary studies: a compass for exploring jungles of tangled trees. (ISSN: 2396-9814 online; 1674-5507 print) Current Zoology 62 (4): 393-403. (FI = 1.8; Q1) https://doi.org/10.1093/cz/zow018 

Pérez-Ponce de León G., A. Martínez-Aquino and B. Mendoza-Garfias. 2015. Two new species of Phyllodistomum Braun, 1899 (Digenea: Gorgoderidae), from freshwater fishes (Cyprinodontiformes: Goodeidae: Goodeinae) in central Mexico: An integrative taxonomy approach using morphology, ultrastructure and molecular phylogenetics. (ISSN 1175-5326 -print edition-ISSN 1175-5334 -online edition-) Zootaxa 4013 (1): 87-99.

http://dx.doi.org/10.11646/zootaxa.4016 (FI = 1.06; Q2)

Martínez-Aquino, A., F. Brusa and C. Damborenea. 2014. Checklist of freshwater symbiotic temnocephalans (Platyhelminthes, Rhabditophora, Temnocephalida) from the Neotropics. Zoosystematics and Evolution 90 (2): 147-162. (ISSN: 1860-0743 Online Edition; ISSN: 1435-1935 Print Edition) (FI = 0.8; Q3) http://dx.doi.org/10.3897/zse.90.8688

Martínez-Aquino, A., C.A. Mendoza-Palmero, R. Aguilar-Aguilar and G. Pérez-Ponce de León. 2014. Checklist of helminth parasites of Goodeinae (Osteicthyes: Cyprinodontiformes: Goodeidae), an endemic subfamily of freshwater fishes from Mexico. Zootaxa 3856 (2): 151-191. (ISSN 1175-5326 -Print Edition- & ISSN: 1175-5334 -Online Edition-) (FI = 1.06; Q2) http://dx.doi.org/10.11646/zootaxa.3856.2.1

Martínez-Aquino, A., F.S. Ceccarelli, L.E. Eguiarte, E. Vázquez-Domínguez and G. Pérez-Ponce de León. 2014. Do the historical biogeography and evolutionary history of the digenean Margotrema spp. across central Mexico mirror those of their freshwater fish hosts (Goodeinae)? PLOS One 9 (7): e101700. (FI = 3.534; Q1) (ISSN: 1932-6203)

 http://dx.plos.org/10.1371/journal.pone.0101700

Aguilar-Aguilar, R., A. Martínez-Aquino, H. Espinosa-Pérez and G. Pérez-Ponce de León. 2014. Helminth parasites of freshwater fishes from Cuatro Ciénegas, Coahuila, in the Chihuahuan desert of Mexico: Inventory and biogeographical implications. Integrative Zoology 9 (3): 328-339. (ISSN: 1749-4877) (FI = 1.288; Q1) http://dx.doi.org/10.1111/1749-4877.12038

Martínez-Aquino, A., F.S. Ceccarelli and G. Pérez-Ponce de León. 2013. Molecular phylogeny of the genus Margotrema (Digenea: Allocreadiidae), parasitic flatworms of goodeid freshwater fishes across central Mexico: species boundaries, host-specificity and geographical congruence. Zoological Journal of the Linnean Society 168 (1): 1-16. (ISSN: 1096-3642) (FI = 2.583; Q1) http://dx.doi.org/10.1111/zoj.12027

Pérez-Ponce de León G., A. Martínez-Aquino and B. Mendoza- Garfias. 2013. A new species of Margotrema (Digenea, Allocreadiidae) from the leopard splitfin Xenotaenia resolanae (Cyprinodontiformes, Goodeidae) from west-central Mexico. Zootaxa 3670 (1): 94-96. (ISSN 1175-5326 -Print Edition- & ISSN: 1175-5334 -Online Edition-) (FI = 1.06; Q2)

http://zoobank.org/urn:lsid:zoobank.org:pub:7C2432D5-2C54-4426-B181-C52D9FA78C05

Choudhury, A., S. Zheng, G. Pérez-Ponce de León, A. Martínez-Aquino, Ch. Brosseau and E. Gale. 2013. The invasion Asian fish tapeworm, Bothriocephalus acheilognathi Yamaguti, 1934, in the Chagres River/Panama Canal drainage, Panama. BioInvasions Records 2: 99-104. (ISSN: 2242-1300, electronic versión) http://dx.doi.org/10.3391/bir.2013.2.2.01

Martínez-Aquino A., R. Pérez-Rodríguez, D.I. Hernández-Mena, L. Garrrido-Olvera, R. Aguilar-Aguilar and G. Pérez-Ponce de León. 2012. Endohelminth parasites of seven goodein species (Cyprinodontiformes: Goodeidae) from Zacapu Lake, Michoacán, Central Mexico Plateau. Hidrobiológica 22 (1): 89-93.  (ISSN: 0188-8897) (FI = 0.4; Q3)

http://www.scielo.org.mx/scielo.php?script=sci_arttext&pid=S0188-88972012000100011

http://dx.doi.org/S0188-88972012000100011 

Martínez-Aquino A., D.I. Hernández-Mena, R. Pérez-Rodríguez, R. Aguilar-Aguilar and G. Pérez-Ponce de León. 2011. Endohelminth parasites of the freshwater fish Zoogoneticus purhepechus (Cyprinodontiformes: Goodeidae) from two springs in Lower Lerma River, Mexico. Revista Mexicana de Biodiversidad 82 (4): 1132-1137. (ISSN: 1870-3453 impreso, ISSN 2007-8706 online) (FI = 0.29; Q3) http://www.revistas.unam.mx/index.php/bio/article/view/28771

Aguilar-Aguilar R., R. Rosas-Valdez, A. Martínez-Aquino, R. Pérez-Rodríguez, O. Domínguez-Domínguez and G. Pérez-Ponce de León. 2010. Helminth fauna of two cyprinid fish (Campostoma ornatum and Codoma ornata) from the upper Piaxtla River, Northwestern Mexico. Helminthologia 47 (4): 251-256.  (ISSN: 0440-6605)  (FI =  0.773; Q2) 

http://dx.doi.org/10.2478/s11687-010-0039-2

Martínez-Aquino, A., R. Aguilar-Aguilar, R. Pérez-Rodríguez and G. Pérez-Ponce de León. 2009. Helminth Parasites of Xenotaenia resolanae (Osteichthyes: Goodeidae) From the Cuzalapa Hydrological System, Jalisco, Mexico. Journal of Parasitology 95 (5): 1221-1223.  (ISSN: 0022-3395) (FI = 1.405; Q2) http://dx.doi.org/10.1645/ge-1925.1

Aguilar-Aguilar, R., Martínez-Aquino, A., R. Pérez-Rodríguez and G. Pérez-Ponce de León. 2009. Digenea, Heterophyidae, Centrocestus formosanus metacercariae: Distribution extension for Mexico, new state record, and geographic distribution map. Check List 5 (2): 357-359. (Q3) (ISSN: 1809-127X) http://www.checklist.org.br/archive?vol=5&num=2

Martínez-Aquino, A., M.E. Reyna-Fabián, R. Rosas-Valdez, U. Razo-Mendivil, G. Pérez-Ponce de León and M. García-Varela. 2009. Detecting a complex of cryptic species within Neoechinorhynchus golvani (Acanthocephala: Neoechinorhynchidae) inferred from ITSs and LSU rDNA Gene Sequences. Journal of Parasitology 95 (5): 1040-1047. (ISSN: 0022-3395) (FI = 1.405; Q2) http://dx.doi.org/10.1645/GE-1926.1

Aguilar-Aguilar, R., G. Salgado-Maldonado, R. Contreras-Medina and Martínez-Aquino, A. 2008. Richness and endemism of helminth parasites of freshwater fishes in Mexico. Biological Journal of the Linnean Society 94 (2): 435-444. (ISSN: 0024-4066) (FI = 2.193; Q1)

http://dx.doi.org/10.1111/j.1095-8312.2008.00994.x

Martínez-Aquino, A. and R. Aguilar-Aguilar. 2008. Helminth parasites of the pupfish Cyprinodon meeki (Pisces: Cyprinodontiformes), an endemic freshwater fish from North-Central Mexico.  Helminthologia 45 (1): 48-51. (ISSN: 0440-6605) (FI =  0.773; Q2)

http://dx.doi.org/10.2478/s11687-008-0008-1

Martínez-Aquino, A., G. Salgado-Maldonado, R. Aguilar-Aguilar, G. Cabañas-Carranza and C.A. Mendoza-Palmero. 2007. Helminth parasites communities of Characodon audax and Characodon lateralis (Pisces: Goodeidae), endemic freshwater fishes from Durango, Mexico. The Southwestern Naturalist 52 (1): 125-130. (ISSN: 0038-4909)  (FI = 0.309; Q4)

http://dx.doi.org/10.1894/0038-4909(2007)52[125:HPCOCA]2.0.CO;2

Martínez-Aquino, A., G. Salgado-Maldonado, R. Aguilar-Aguilar, G. Cabañas-Carranza and M.P. Ortega-Olivares. 2004. Helminth parasites of Chapalichthys encaustus (Pisces: Goodeidae), an endemic freshwater fish from Lake Chapala, Jalisco, Mexico. Journal of Parasitology 90 (4): 889-890. (ISSN: 0022-3395) (FI = 1.405; Q2) http://dx.doi.org/10.1645/GE-255R

Book Chapters

Lagunas-Calvo O., Aguilar-Aguilar, R., Islas-Ortega, A and A. Martínez-Aquino. 2016. Parásitos de peces dulceacuícolas de la porción oaxaqueña de la provincia biogeográfica. En: Luna I., Espinosa D. y R. Contreras-Medina (Editores). Biodiversidad de la Sierra Madre del Sur: Una síntesis preliminar. Universidad Nacional Autónoma de México, Ciudad de México. pp. 313-323. (ISBN: 978-607-02-7906-5).

Martínez-Aquino, A., R. Aguilar-Aguilar, H.O. Santa Anna del Conde-Juárez and R. Contreras-Medina. 2007. Empleo de herramientas panbiogeográficas para detectar áreas para conservar: Un ejemplo con taxones dulceacuícolas. En: Luna I., J.J. Morrone y D. Espinosa (Editores). Biodiversidad de la Faja Volcánica Transmexicana. Las Prensas de Ciencias, Facultad de Ciencias, UNAM, México, D.F. pp. 449-460. (ISBN: 978-970-32-4871-1; ∑c = 6).

Aguilar-Aguilar, R., R. Contreras-Medina, A. Martínez-Aquino, G. Salgado-Maldonado and A. González-Zamora.  2005. Aplicación del Análisis de Parsimonia de Endemismos (PAE) en los sistemas hidrológicos de México: Un ejemplo con helmintos parásitos de peces dulceacuícolas. En: Llorente J. y J.J. Morrone (Editores). Biogeografía en Iberoamérica. Regionalización: aspectos históricos, metodológicos y aplicaciones. Las Prensas de Ciencias, Facultad de Ciencias, UNAM, México. D.F. pp. 227-239. (ISBN: 970-32-2509-8; ∑c = 18).

Essays

“Lo que aprendimos de Las voces del corredor migratorio del Pacífico” Published In Review: Terra Peninsular, 2019 November 13.