Look at the DNA profiles in the figures below. Each series of blue and green colored “peaks” in the figures represent the elements of the DNA profile that each of us has. If you look closely beneath each peak, you will see a box with some numbers. These boxes reveal the identities of the peaks, which are actually called alleles. An allele is a variety of a genetic marker. One genetic marker you may be familiar with are the blood groups, A, B, O, and AB. Your blood type is due to the collection of blood group alleles you possess. If you are type AB blood, you have one copy of an A allele and one copy of a B allele that together make you blood type AB. The alleles in the profiles are like the blood group alleles, only they are just differences that are revealed at the DNA level instead of in one’s blood type.
Count how many genetic markers are revealed in the DNA profiles shown. Above the peaks in the profile are the chromosomal addresses being typed (highlighted in green boxes). These “locus identifiers” reflect the chromosomal map coordinates where the genetic markers being typed are located. Any DNA typing lab in the world can read the locus identifiers and know exactly where the testing is focused. So to compare the DNA profiles, one looks at the allele identities (shown in the box beneath each peak and represented by a number on the first like (10, 11, 12, etc.) in the samples being compared and asks if the DNA profiles are identical or related in some way. In the case of this plane crash, two questions are being asked that DNA typing may answer:
1. Who was actually piloting the plane? Answering this question may be possible because there was a blood stain found in the wreckage on the steering wheel directly in front of the pilot’s seat in the cockpit. You need to compare that DNA profile with the profiles of the two pilots who were in the cockpit at the time of the crash. Those DNA profiles are available in the files of the airline because all flight staff are DNA profiled as part of their hiring. Take a sheet of paper and make three columns, one for the DNA profile from the blood stain and one each for the two pilots. Now compare the alleles for each DNA marker and see if any match.
2. The second question is a little more complex. The three passengers on this flight were a father, his daughter, and the daughter’s female friend. We recovered human remains from the wreckage but it was impossible to identify anyone just by looking, so we produced DNA profiles. If you notice the DNA results from the top-far left marker in the profile, you will see either the letter X or XY. This denotes the sex of individual from whom the sample was collected. Can the sex of the DNA profiles produced from the unidentified passengers provide any guidance as to who each of these victims might be? Also recall that the passenger manifest identified a man and his daughter as two of the three passengers on board. Try and use the laws of Mendelian genetics to see if any of the DNA profiles are consistent with being produced from a parent and child. For a parent:child comparison, half of the DNA in a child is inherited from a parent. Therefore, for every marker in the profiles, there should be at least one allele shared between the victim who could be a father and the victim who is his child. If we can do that, we can by default identify the third victim who would presumably be excluded as the daughter of the victim who is the father. Again, it is recommended that you get pencil and paper and write the alleles for each marker, for each sample in columns to facilitate making the comparisons.