Publications

This page include only English publications, while publications in Russian are listed separately. All lists are in reverse chronological order. Citation metrics for all publications can be found at Google Scholar Citations. More bibliographic details can be found in my Zotero library.

Books (1)

Yurkin M.A. Discrete dipole simulations of light scattering by blood cells, PhD thesis, University of Amsterdam, 2007. (PDF, slides)

Book chapters (4)

Yurkin M.A. Computational Approaches for Plasmonics, in Handbook of Molecular Plasmonics, ed. Della Sala F. and D’Agostino S., Pan Stanford Publishing, Singapore, pp.83–135 (2013). (PDF)

Maltsev V.P., Hoekstra A.G., and Yurkin M.A. Optics of white blood cells: optical models, simulations, and experiments, in Advanced Optical Flow Cytometry: Methods and Disease Diagnoses, ed. Tuchin V.V., Wiley-VCH, Weinheim, pp.63–93 (2011). (PDF)

Tarasov P.A., Yurkin M.A., Avrorov P.A., Semyanov K.A., Hoekstra A.G., and Maltsev V.P. Optics of erythrocytes, in Optics of Biological Particles, ed. Hoekstra A.G., Maltsev V.P., and Videen G., Springer, Dordrecht, pp.243–259 (2007). (PDF)

Semyanov K.A., Zharinov A.E., Tarasov P.A., Yurkin M.A., Skribunov I.G., van Bockstaele D.R., and Maltsev V.P. Optics of leucocytes, in Optics of Biological Particles, ed. Hoekstra A.G., Maltsev V.P., and Videen G., Springer, Dordrecht, pp.269–280 (2007). (PDF)

Peer-reviewed journal papers (35)

Moskalensky A.E., Chernyshev A.V., Yurkin M.A., Nekrasov V.M., Polshchitsin A.A., Parks D.R., Moore W.A., Filatenkov A., Maltsev V.P., and Orlova D.Y. Dynamic quantification of antigen molecules with flow cytometry, J. Immunol. Meth. accepted (2015). (PDF)

Smunev D.A., Chaumet P.C., and Yurkin M.A. Rectangular dipoles in the discrete dipole approximation, J. Quant. Spectrosc. Radiat. Transfer 156, 67–79 (2015). (PDF)

Yurkin M.A. Comment on “Rapid and efficient prediction of optical extinction coefficients for gold nanospheres and gold nanorods,” J. Phys. Chem. C 118, 21738–21739 (2014). (PDF, link)

Konokhova A.I., Rodionov A.A., Gilev K.V., Mikhaelis I.M., Strokotov D.I., Moskalensky A.E., Yurkin M.A., Chernyshev A.V., and Maltsev V.P. Enhanced characterisation of milk fat globules by their size, shape and refractive index with scanning flow cytometry, Int. Dairy J. 39, 316–323 (2014). (PDF)

Nekrasov V.M., Polshchitsin A.A., Yurkin M.A., Yakovleva G.E., Maltsev V.P., and Chernyshev A.V. Brownian aggregation rate of colloid particles with several active sites, J. Chem. Phys. 141, 064309 (2014). (PDF)

Moskalensky A.E., Strokotov D.I., Chernyshev A.V., Maltsev V.P., and Yurkin M.A. Additivity of light-scattering patterns of aggregated biological particles, J. Biomed. Opt. 19, 085004 (2014). (PDF)

Zhukas L.A., Veber S.L., Mikenas T.B., Yurkin M.A., Karpova E.V., Maltsev V.P., Mamatyuk V.I., Echevskaya L.G., Bagryanskaya E.G., and Zakharov V.A. Size-dependent optical properties of polyethylene powders in far-IR region: On the way to universal matrix, J. Quant. Spectrosc. Radiat. Transfer 147, 1–7 (2014). (PDF)

Podowitz D.I., Liu C., Yang P., and Yurkin M.A. Comparison of the pseudo-spectral time domain method and the discrete dipole approximation for light scattering by ice spheres, J. Quant. Spectrosc. Radiat. Transfer 146, 402–409 (2014). (PDF)

Yurkin M.A. Comment on “Plasmonic nanoparticle monomers and dimers: from nanoantennas to chiral metamaterials” by Chigrin et al. in Appl Phys B (2011) 105:81–97, Appl. Phys. B 114, 601–602 (2014). (PDF)

Yurkin M.A. Symmetry relations for the Mueller scattering matrix integrated over the azimuthal angle. J. Quant. Spectrosc. Radiat. Transfer 131, 82–87 (2013). (PDF)

Gilev K.V., Yurkin M.A., Dyatlov G.V., Chernyshev A.V., and Maltsev V.P. An optimization method for solving the inverse Mie problem based on adaptive algorithm for construction of interpolating database. J. Quant. Spectrosc. Radiat. Transfer 131, 202–214 (2013). (PDF)

Konokhova A.I., Gelash A.A., Yurkin M.A., Chernyshev A.V., and Maltsev V.P. High-precision characterization of individual E. coli cell morphology by scanning flow cytometry, Cytometry A 83A, 568–575 (2013). (PDF)

Yurkin M.A. and Kahnert M. Light scattering by a cube: accuracy limits of the discrete dipole approximation and the T-matrix method. J. Quant. Spectrosc. Radiat. Transfer 123, 176–183 (2013). (PDF)

Moskalensky A.E., Yurkin M.A., Konokhova A.I., Strokotov D.I., Nekrasov V.M., Chernyshev A.V., Tsvetovskaya G.A., Chikova E.D., and Maltsev V.P. Accurate measurement of volume and shape of resting and activated blood platelets from light scattering. J. Biomed. Opt. 18, 017001 (2013). (PDF)

Schmidt K., Yurkin M.A., and Kahnert M. A case study on the reciprocity in light scattering computations. Opt. Express 20, 23253–23274 (2012). (PDF)

Liu C., Bi L., Panetta R.L., Yang P., and Yurkin M.A. Comparison between the pseudo-spectral time domain method and the discrete dipole approximation for light scattering simulations. Opt. Express 20, 16763–16776 (2012). (PDF)

Konokhova A.I., Yurkin M.A., Moskalensky A.E., Chernyshev A.V., Tsvetovskaya G.A., Chikova E.D., and Maltsev V.P. Light-scattering flow cytometry for identification and characterization of blood microparticles. J. Biomed. Opt. 17, 057006 (2012). (PDF)

Dyatlov G.V., Gilev K.V., Yurkin M.A., and Maltsev V.P. An optimization method with precomputed starting points for solving the inverse Mie problem. Inv. Probl. 28, 045012 (2012). (PDF)

Yurkin M.A. and Hoekstra A.G. The discrete-dipole-approximation code ADDA: capabilities and known limitations. J. Quant. Spectrosc. Radiat. Transfer 112, 2234–2247 (2011). (PDF)

Yurkin M.A., Min M., and Hoekstra A.G. Application of the discrete dipole approximation to very large refractive indices: Filtered coupled dipoles revived. Phys. Rev. E 82, 036703 (2010). (PDF)

Gilev K.V., Eremina E., Yurkin M.A., and Maltsev V.P. Comparison of the discrete dipole approximation and the discrete source method for simulation of light scattering by red blood cells. Opt. Express 18, 5681–5690 (2010). (PDF)

Yurkin M.A., de Kanter D., and Hoekstra A.G. Accuracy of the discrete dipole approximation for simulation of optical properties of gold nanoparticles. J. Nanophoton. 4, 041585 (2010). (PDF)

Strokotov D.I., Yurkin M.A., Gilev K.V., van Bockstaele D.R., Hoekstra A.G., Rubtsov N.B., and Maltsev V.P. Is there a difference between T- and B-lymphocyte morphology? J. Biomed. Opt. 14, 064036 (2009). (PDF)

Orlova D.Y., Yurkin M.A., Hoekstra A.G., and Maltsev V.P. Light scattering by neutrophils: model, simulation, and experiment. J. Biomed. Opt. 13, 054057 (2008). (PDF)

Yurkin M.A., Semyanov K.A., Maltsev V.P., and Hoekstra A.G. Discrimination of granulocyte subtypes from light scattering: theoretical analysis using a granulated sphere model. Opt. Express 15, 16561–16580 (2007). (PDF)

Yurkin M.A., Hoekstra A.G., Brock R.S., and Lu J.Q. Systematic comparison of the discrete dipole approximation and the finite difference time domain method for large dielectric scatterers. Opt. Express 15, 17902–17911 (2007). (PDF)

Yurkin M.A., Maltsev V.P., and Hoekstra A.G. The discrete dipole approximation for simulation of light scattering by particles much larger than the wavelength. J. Quant. Spectr. Radiat. Transf. 106, 546–557 (2007). (PDF)

Yurkin M.A. and Hoekstra A.G. The discrete dipole approximation: an overview and recent developments. J. Quant. Spectr. Radiat. Transf. 106, 558–589 (2007). (PDF)

Penttila A., Zubko E., Lumme K., Muinonen K., Yurkin M.A., Draine B.T., Rahola J., Hoekstra A.G., and Shkuratov Y. Comparison between discrete dipole implementations and exact techniques. J. Quant. Spectrosc. Radiat. Transfer 106, 417–436 (2007). (PDF)

Yurkin M.A., Maltsev V.P., and Hoekstra A.G. Convergence of the discrete dipole approximation. I. Theoretical analysis. J. Opt. Soc. Am. A 23, 2578–2591 (2006). (PDF)

Yurkin M.A., Maltsev V.P., and Hoekstra A.G. Convergence of the discrete dipole approximation. II. An extrapolation technique to increase the accuracy. J. Opt. Soc. Am. A 23, 2592–2601 (2006). (PDF)

Kolesnikova I.V., Potapov S.V., Yurkin M.A., Hoekstra A.G., Maltsev V.P., and Semyanov K.A. Determination of volume, shape and refractive index of individual blood platelets. J. Quant. Spectrosc. Radiat. Transfer 102, 37–45 (2006). (PDF)

Min M., Hovenier J.W., Dominik C., de Koter A., and Yurkin M.A. Absorption and scattering properties of arbitrary shaped particles in the Rayleigh domain: A rapid computational method and a theoretical foundation for the statistical approach. J. Quant. Spectrosc. Radiat. Transfer 97, 161–180 (2006). (PDF)

Yurkin M.A., Semyanov K.A., Tarasov P.A., Chernyshev A.V., Hoekstra A.G., and Maltsev V.P. Experimental and theoretical study of light scattering by individual mature red blood cells with scanning flow cytometry and discrete dipole approximation. Appl. Opt. 44, 5249–5256 (2005). (PDF)

Surovtsev I.V., Yurkin M.A., Shvalov A.N., Nekrasov V.M., Sivolobova G.F., Grajdantseva A.A., Maltsev V.P., and Chernyshev A.V. Kinetics of the initial stage of immunoagglutination studied with the scanning flow cytometer. Colloid. Surf. B 32, 245–255 (2003). (PDF)

Conference abstracts and proceedings (48)

Yurkin M.A. and Huntemann M. Discrete dipole approximation for particles near surface: a 3D-FFT-accelerated implementation, Laser-light and Interactions with Particles (LIP-2014), 25–29 August 2014, Marseille, France, paper FF-1. (abstract, slides)

Konokhova A.I., Chernova D.N., Strokotov D.I., Yurkin M.A., and Maltsev V.P. Identification and characterization of cell-derived microparticles using light scattering, Laser-light and Interactions with Particles (LIP-2014), 25–29 August 2014, Marseille, France, paper PC-7. (abstract)

Gilev K.V., Yurkin M.A., Chernyshev A.V., and Maltsev V.P. Solution of the inverse light-scattering problem for characterization of red blood cells, International conference “Mathematical Modeling and High-Performance Computing in Bioinformatics, Biomedicine and Biotechnology” (MM-HPC-BBB-2014), 24–27 June 2014, Novosibirsk, Russia, p. 30. (abstract)

Moskalensky A.E., Strokotov D.I., Yurkin M.A., and Maltsev V.P. Characterization of blood platelets solving the inverse light-scattering problem with pre-computed interpolating set, International conference “Mathematical Modeling and High-Performance Computing in Bioinformatics, Biomedicine and Biotechnology” (MM-HPC-BBB-2014), 24–27 June 2014, Novosibirsk, Russia, p. 58. (abstract)

Konokhova A.I., Gilev K.V., Strokotov D.I., Yurkin M.A., and Maltsev V.P. The solution of the inverse light-scattering problem for precise morphological characterization of milk fat globules, International conference “Mathematical Modeling and High-Performance Computing in Bioinformatics, Biomedicine and Biotechnology” (MM-HPC-BBB-2014), 24–27 June 2014, Novosibirsk, Russia, p. 45. (abstract)

Mikhaelis I.M., Chernyshev A.V., Yurkin M.A., Nekrasov V.M., and Maltsev V.P. Apoptotic nuclear volume decrease: analysis of confocal images and mathematical model, The 9th international conference on Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2014), 23–28 June 2014, Novosibirsk, Russia, p. 106. (abstract)

Konokhova A.I., Chernova D.N., Strokotov D.I., Yurkin M.A., Chernyshev A.V., and Maltsev V.P. Label-free identification and characterization of cell-derived microparticles with scanning flow cytometry, ISAC XXIX International Congress, 17–21 May 2014, Ft. Lauderdale, USA, p. 119. (abstract)

Moskalensky A.E., Yurkin M.A., Strokotov D.I., and Maltsev V.P. A shape-based study of platelet activation with the scanning flow cytometry, ISAC XXIX International Congress, 17–21 May 2014, Ft. Lauderdale, USA, p. 157. (abstract)

Rodionov A.A., Strokotov D.I., Konokhova A.I., Mikhaelis I.M., Yurkin M.A., Chernyshev A.V., and Maltsev V.P. Flow cytometry and food hydrocolloids: milk fat globules characterization, ISAC XXIX International Congress, 17–21 May 2014, Ft. Lauderdale, USA, p. 189. (abstract)

Moskalensky A.E., Yurkin M.A., and Maltsev V.P. Aggregates of biological cells: surprising features in light scattering, Workshop "Scattering by Aggregates (on Surfaces)", 24–25 March 2014, Bremen, Germany, pp. 58–61. (abstract)

Yurkin M.A. and Moskalensky A.E. Fast discrete dipole approximation for particles on surface, Workshop "Scattering by Aggregates (on Surfaces)", 24–25 March 2014, Bremen, Germany, pp. 94–95. (abstract, slides)

Yurkin M.A. and Kahnert M. Benchmark calculations with the discrete dipole approximation and the T-matrix method for cubes, Electromagnetic and Light Scattering XIV, 17–21 June 2013, Lille, France, Paper 25. (abstract, slides)

Moskalensky A.E., Yurkin M.A., Konokhova A.I., Strokotov D.I., and Maltsev V.P. Application of the scanning flow cytometry for characterization of blood platelets, Electromagnetic and Light Scattering XIV, 17–21 June 2013, Lille, France, Paper 50. (abstract)

Konokhova A.I., Yurkin M.A., and Maltsev V.P. Characterization of E. coli morphology by scanning flow cytometry, Electromagnetic and Light Scattering XIV, 17–21 June 2013, Lille, France, Paper 73. (abstract)

Moskalensky A.E., Yurkin M.A., Konokhova A.I., Strokotov D.I., Nekrasov V.M., Chernyshev A.V., and Maltsev V.P. A label-free shape-based detection of activated platelets with scanning flow cytometry, ISAC XXVIII International Congress, 19–22 May 2013, San Diego, USA, p. 127. (abstract)

Konokhova A.I., Yurkin M.A., and Maltsev V.P. Scanning flow cytometry for static and dynamic characterization of E. coli cells, ISAC XXVIII International Congress, 19–22 May 2013, San Diego, USA, pp. 194–195. (abstract)

Yurkin M.A. Challenges in simulation of optical properties of metallic nanoparticles using the discrete dipole approximation. Tacona-Photonics 2012, 24–26 October 2012, Bad Honnef, Germany, AIP Conf. Proc. 1475: 98–100. (abstract, slides)

Strokotov D.I., Moskalensky A.E., Nekrasov V.M., Yurkin M.A., Chernyshev A.V., and Maltsev V.P. Optical super-resolution with polarized light-scattering for precise characterization of non-spherical particles by flow cytometry. ISAC XXVII International Congress, 23–27 June 2012, Leipzig, Germany, p. 171. (abstract)

Moskalensky A.E., Strokotov D.I., Nekrasov V.M., Yurkin M.A., Chernyshev A.V., and Maltsev V.P. Simultaneous determination of size and shape of human blood platelets using light-scattering flow cytometry. ISAC XXVII International Congress, 23–27 June 2012, Leipzig, Germany, p. 177. (abstract)

Konokhova A.I., Yurkin M.A., Moskalensky A.E., Chernyshev A.V., and Maltsev V.P. Identification and characterization of blood microparticles from light scattering. ISAC XXVII International Congress, 23–27 June 2012, Leipzig, Germany, p. 178. (abstract)

Konokhova A.I., Yurkin M.A., Gelash A.A., and Maltsev V.P. Characterization of E. coli morphology from light scattering. ISAC XXVII International Congress, 23–27 June 2012, Leipzig, Germany, pp. 204–205. (abstract)

Yurkin M.A., Dyatlov G.V., Gilev K.V., and Maltsev V.P. Optimization methods for characterization of single particles from light scattering patterns. Electromagnetic and Light Scattering XIII, 26–30 September 2011, Taormina, Italy, Atti Accad. Pelorit. Pericol. Cl. Sci. Fis. Mat. Nat. 89: C1V89S1P096. (abstract, slides)

Yurkin M.A. Development of the discrete dipole approximation for simulation of interaction of light with nanoparticles of arbitrary shape and structure, RusNanoTech 2010, 1–3 November 2010, Moscow, Russia. (abstract, slides)

Gelash A.A., Yurkin M.A., and Maltsev V.P. Characterization of E. Coli cells by the scanning flow cytometry. NATO ASI on Special Detection Technique (Polarimetry) and Remote Sensing, 12–25 September 2010, Kyiv, Ukraine, p.56. (abstract)

Gilev K.V., Yurkin M.A., and Maltsev V.P. Characterization of erythrocytes and platelets using precalculated database of light scattering patterns. NATO ASI on Special Detection Technique (Polarimetry) and Remote Sensing, 12–25 September 2010, Kyiv, Ukraine, p.58. (abstract)

Yurkin M.A., de Kanter D., and Hoekstra A.G. Accuracy of the discrete dipole approximation for gold nanoparticles. NATO ASI on Special Detection Technique (Polarimetry) and Remote Sensing, 12–25 September 2010, Kyiv, Ukraine, p.118. (abstract, slides)

Yurkin M.A., Yurkina O.M., and Hoekstra A.G. Features and capabilities of the discrete dipole approximation code ADDA 1.0. NATO ASI on Special Detection Technique (Polarimetry) and Remote Sensing, 12–25 September 2010, Kyiv, Ukraine, p.119. (abstract, slides, poster)

Yurkin M.A. Light scattering simulations with the discrete dipole approximation. Electromagnetic and Light Scattering XII, 28 June – 2 July 2010, Helsinki, Finland, pp.326–329 (invited). (abstract, slides)

Strokotov D.I., Yurkin M.A., Gilev K.V., Maltsev V.P. Scanning flow cytometry in measurement of lymphocyte morphology: cell and nucleus sizes, cytoplasm and nucleus refractive indices. XXV Congress of the International Society for Advancement of Cytometry, 8–12 May 2010, Seattle, Washington, USA, p.217. (abstract)

Strokotov D.I., Yurkin M.A., Maltsev V.P. Solution of inverse light scattering problem for mononuclear cell characterization. IX International conference "Atomic and Molecular Pulsed Lasers" (AMPL-2009), 14–18 September 2009, Tomsk, Russia, p.109. (abstract)

Yurkin M.A., Strokotov D.I., Gilev K.V., van Bockstaele D.R., Hoekstra A.G., Rubtsov N.B., and Maltsev V.P. Characterization of lymphocytes using the scanning flow cytometry. PIERS 2009 in Moscow Abstracts, 18–21 August 2009, Moscow, Russia, p.352. (abstract, slides)

Yurkin M.A. Discrete dipole approximation for extreme refractive indices. Oort Workshop 2009 Interaction of cosmic grains with light: recent developments, 26 June 2009, Leiden, Netherlands (invited, slides).

Yurkin M.A., de Kanter D., and Hoekstra A.G. Study of light scattering by a granulated coated sphere – a model of granulated blood cells. The 11th Conference on Electromagnetic and Light Scattering, 7–12 September 2008, Hatfield, UK, pp.299–302. (abstract, slides)

Yurkin M.A., Min M., and Hoekstra A.G. Application of the discrete dipole approximation to extreme refractive indices: filtered coupled dipoles revived. The 11th Conference on Electromagnetic and Light Scattering, 7–12 September 2008, Hatfield, UK, pp.109–112. (abstract, slides)

Semyanov К.А., Tarasov P.A., Yurkin M.A., Hoekstra A.G., and Maltsev V.P. Characterization of native red blood cell morphology by scanning flow cytometry. 8th International Congress on Optical Particle Characterization, 9–13 July 2007, Graz, Austria, p.56. (abstract)

Yurkin M.A., Hoekstra A.G., Brock R.S., and Lu J. Systematic comparison of the discrete dipole approximation and the finite difference time domain method. The 10th Conference on Electromagnetic and Light Scattering, 17–22 June 2007, Bodrum, Turkey, pp.249–252. (abstract, slides)

Yurkin M.A., Semyanov K.A., Maltsev V.P., and Hoekstra A.G. Light scattering by granulated spheres applied to discriminate subtypes of granulated blood cells. International Conference on Laser Applications in Life Sciences 2007, 11–14 June 2007, Moscow, Russia, p.TuL07-II-3. (abstract, slides)

Yurkin M.A. Current capabilities of the discrete dipole approximation for very large particles: speed, accuracy, and computational tricks. The DDA-Workshop, 23 March 2007, Bremen, Germany, pp.31–33. (abstract, slides)

Yurkin M.A. Tutorial for "Amsterdam DDA". The DDA-Workshop, 23 March 2007, Bremen, Germany, p.30. (abstract, handout)

Yurkin M.A. and Hoekstra A.G. An extrapolation technique to increase the accuracy of the discrete dipole approximation. The 9th Conference on Electromagnetic and Light Scattering, 5–9 June 2006, St. Petersburg, Russia, pp.283–286. (abstract, slides)

Yurkin M.A., Maltsev V.P., and Hoekstra A.G. Can the Discrete Dipole Approximation simulate scattering of particles with size parameter equal to 100? The 9th Conference on Electromagnetic and Light Scattering, 5–9 June 2006, St. Petersburg, Russia, pp.279–282. (abstract, slides)

Penttila A., Zubko E., Lumme K., Muinonen K., Yurkin M.A., Shkuratov Y., and Hoekstra A.G. Comparison between discrete dipole and exact techniques. The 9th Conference on Electromagnetic and Light Scattering, 5–9 June 2006, St. Petersburg, Russia, pp.227–230. (abstract)

Strokotov D.I., Skribunov I.G., Yurkin M.A., van Bockstaele D.R., Lenjou M., and Semyanov K.A. Identification of blood cells subpopulations from angle resolved light scattering. Optics of Biological Particles, 3–6 October 2005, Novosibirsk, Russia, pp.48–49. (abstract)

Yurkin M.A., de Kanter D., and Hoekstra A.G. Applicability of effective medium approximation to light scattering by granulated biological cells - first results. Optics of Biological Particles, 3–6 October 2005, Novosibirsk, Russia, pp.46–47. (abstract, slides)

Yurkin M.A. and Hoekstra A.G. Capabilities of the discrete dipole approximation for simulation light scattering by biological cells. Optics of Biological Particles, 3–6 October 2005, Novosibirsk, Russia, pp.19–20. (abstract, slides)

Yurkin M.A., Semyanov K.A., Hoekstra A.G., and Maltsev V.P. Experimental and theoretical study of light scattering by individual mature red blood cells with scanning flow cytometry and discrete dipole approximation. The 8th Conference on Electromagnetic and Light Scattering, 16–20 May 2005, Salobrena, Spain, pp.333–336. (abstract, slides)

Surovtsev I.V., Yurkin M.A., Shvalov A.N., and Sivolobova G.F. Kinetic study of the initial stages of agglutination process with scanning flow cytometer. Manipulation and Analysis of Biomolecules, Cells and Tissues, Photonic West 2003, 28–29 January 2003, San Jose, California, USA. SPIE Proc. 4962: 354–362. (abstract)

Surovtsev I.V., Grajdantseva A.A., and Yurkin M.A. Use of scanning flow cytometry for biodetection via earliest stages of agglutination immunoassay. Chemical Biological Medical Treatment Symposium IV, 26 April – 2 May 2002, Spiez, Switzerland.