The full list of Publications can either be downloaded or found at ResearchGate or Google Scholar.

Recent Publications


Cai, H, Parks, J.W., Wall, T.A., Stott, M.A., Stambaugh, A., Alfson, K., Griffiths, A., Mathies, R.A., Carrion, R., Patterson, J.L., Hawkins, A.R. & Schmidt, H. (2015). Optofluidic Analysis System for Amplification-Free, Direct Detection of Ebola Infection. Scientific Reports 5 (September 25): 14494.

Dalton, D.M., Ellis, S. R., Nichols, E. M., Mathies, R. A., Toste, F. D., Bergman, R. G. and Raymond, K. N. (2015). Supramolecular Ga4L612– Cage Photosensitizes 1,3-Rearrangement of Encapsulated Guest via Photoinduced Electron Transfer. Journal of the American Chemical Society 2015 137 (32), 10128-10131, DOI: 10.1021/jacs.5b06317

Hoffman, D. P., Leblebici, S. Y., Schwartzberg, A. M., Mathies, R. A. (2015). Exciton Mobility in Organic Photovoltaic Heterojunctions from Femtosecond Stimulated Raman. J. Phys. Chem. Letters. DOI: 10.1021/acs.jpclett.5b01436

Novak, R., Hart, K., and Mathies, R. A. (2015). Single Cell Measurement of Telomerase Expression and Splicing Using Microfluidic Emulsion Cultures, Nucleic Acids Research, 
DOI: 10.1093/nar/gkv477

Dietze, D. R., and Mathies, R. A. (2015). Molecular Orientation and Optical Properties of 3,3’-Diethylthiatricarbocyanine Iodide Adsorbed to Gold Surfaces: Consequences for Surface-Enhanced Resonance Raman Spectroscopy. J. Phys. Chem. C, 2015, 119 (18), pp 9980–9987. 
DOI: 10.1021/acs.jpcc.5b02686

Valley, D. T., Hoffman, D. P., and Mathies, R. A. (2015). Reactive and Unreactive Pathways in a Photochemical Ring Opening Reaction from 2D Femtosecond Stimulated Raman. Physical Chemistry Chemical Physics 17(14), 9231-9240. 
DOI: 10.1039/C4CP05323K

Jung, Y. K., Kim, J. and Mathies, R. A. (2015). Microfluidic Linear Hydrogel Array for Multiplexed Single Nucleotide Polymorphism (SNP) Detection. Analytical Chemistry, 87(6), 3165-3170. DOI: 10.1021/ac5048696

Novak, R., Wartmann, D., Mathies, R. A., Dostálek, & Ertl, P. (2015). Microfluidic Platform for Multiplexed Cell Sampling and Time-Resolved SPR-Based Cytokine Sensing. 6th European Conference of the International Federation for Medical and Biological Engineering. Springer International Publishing, pp 785-788. DOI:

Geng, T. & Mathies, R. A. (2015). Minimizing Inhibition of PCR-STR Typing Using Digital Agarose Droplet Microfluidics. Forensic Science International: Genetics, 14, pp 203-209. DOI
: 10.1016/j.fsigen.2014.10.007

Butterworth, A. L.; Stockton, A. M.; Turin, P.; Ludlam, M.; Diaz-Aguado, M.; Kim, J.; Willis, P.; Mathies, R. A. (2015). Lab-on-a-Chip Organic Analyzer: Instrumentation and Methods for Detecting Trace Organic Molecules and Amino Acid Chirality in Planetary Science. 46th Lunar and Planetary Science Conference, Texas. LPI Contribution No. 1832, p.2813. DOI: 2015LPI....46.2813B


El Muslemany, K. M., Twite, A. A., ElSohly, A. M., Obermeyer, A. C., & Mathies, R. A. (2014). Photoactivated Bioconjugation Between ortho-Azidophenols and Anilines: a Facile Approach to Biomolecular Photopatterning. J. Am. Chem. Soc., 136 (36), pp 12600–12606. 
DOI: 10.1021/ja503056x

Parks, J. W., Olson, M. A., Kim, J., Ozcelik, D., Cai, H., Carrion Jr, R., Patterson, J. L., Mathies, R. A., Hawkins, A. R., & Schmidt, H. (2014). Integration of Programmable Microfluidics and On-Chip Fluorescence Detection for Biosensing Applications. Biomicrofluidics, 8 (5), 054111. 
doi: 10.1063/1.4897226

Mathies, Richard, Peter Willis, Robert Lillis, Ronald Amundson, Kuther Beegle, Anna Butterworth, David Curtis et al. Mars organic analyzer: Methods and instrumentation for detecting trace organic molecules in our solar system. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, vol. 248. 1155 16TH ST, NW, WASHINGTON, DC 20036 USA: AMER CHEMICAL SOC, 2014.  Link

Hoffman, D. P., Ellis, S. R., & Mathies, R. A. (2014). Characterization of a Conical Intersection in a Charge-Transfer Dimer with Two-Dimensional Time-Resolved Stimulated Raman Spectroscopy. J. Phys. Chem. A, 2014, 118 (27), pp 4955–4965. DOI: 10.1021/jp5041986

Parks, J. W., Zempoaltecatl, L., Mathies, R. A., Hawkins, A., & Schmidt, H. (2014). Automated Single Molecule Nucleic Acid Detection with a Waveguide Chip. CLEO: 2014, OSA Technical Digest (online) (Optical Society of America, 2014), paper AF1L.6. doi:10.1364/CLEO_AT.2014.AF1L.6

Zeng, Y., & Mathies, R. A. (2014). Droplet-Based Digital Microfluidics for Single-Cell Genetic Analysis in Microfluidics and Nanotechnology: Biosensing to the Single Molecule Limit. pp 171–200. GoogleBooks

De Re, E., Schlau-Cohen, G. S, Leverenz, R. L., Huxter, V. M., Oliver,T. A.; Mathies, R. A., & Fleming, G. R. (2014). Insights Into the Structural Changes Occurring upon Photoconversion in the Orange Carotenoid Protein from Broadband Two Dimensional Electronic Spectroscopy. J. Phys. Chem. B, 2014, 118 (20), pp 5382–5389. DOI: 10.1021/jp502120h

Polli, D., Weingart, O., Brida, D., Poli, E., Maiuri, M., Spillane, K. M., Bottoni, A., Kukura, P., Mathies, R. A., Cerullo, G. & Garavelli, M. (2014). Wavepacket Splitting and Two-Pathway Deactivation in the Photoexcited Visual Pigment Isorhodopsin. Angew. Chem. Int. Ed., 53(9), 2537-2541. DOI: 10.1002/anie.201309867

Creelman, M., Kumauchi, M., Hoff, W. D., & Mathies, R. A. (2014). Chromophore Dynamics in the PYP Photocycle from Femtosecond Stimulated Raman Spectroscopy. J. Phys. Chem. B, 2014, 118 (3), pp 659–667. DOI: 10.1021/jp408584v

Geng, T., Novak, R., & Mathies, R. A. (2014). Single-Cell Forensic Short Tandem Repeat Typing within Microfluidic Droplets. Analytical Chemistry, 86 (1), 703–712. DOI: 10.1021/ac403137h

Summons R.E., Sessions A.L., Allwood A.C., Barton H.A., Beaty D.W., Blakkolb B., Canham J., Clark B.C., Dworkin J.P., Lin Y., Mathies R., Milkovich S.M., and Steele A. (2014). Planning Considerations Related to the Organic Contamination of Martian Samples and Implications for the Mars 2020 Rover. Astrobiology. December 2014, 14(12): 969-1027. doi:10.1089/ast.2014.1244.

Mathies, R. A., Hoffman, D., Valley, D. and Ellis, S. R. Femtosecond stimulated Raman spectroscopy: A vibrationally specific probe of reactive nonadiabatic coupling?. In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, vol. 247. 1155 16TH ST, NW, WASHINGTON, DC 20036 USA: AMER CHEMICAL SOC, 2014.

Polli, D., Weingart, O., Brida, D., Poli, E., Maiuri, M., Spillane, K. M., Bottoni, A., Kukura, P., Mathies, R. A., Cerullo, G., Garavelli M. (2014) Aufspaltung des Wellenpakets und Doppelpfad-Desaktivierung im photoangeregten Sehpigment Isorhodopsin. Angew. Chemie 126, 2537–2541. DOI: 10.1002/ange.201309867 

Leverenz, R. L., Jallet, D., Li, M. D., Mathies, R. A., Kirilovsky, D., and Kerfeld, C. A. (2014). Structural and Functional Modularity of the Orange Carotenoid Protein: Distinct Roles for the N- and C-Terminal Domains in Cyanobacterial Photoprotection. The Plant Cell 26: 426–437. doi:10.1105/tpc.113.118588.