Publications

The full list of Publications can either be downloaded or found at ResearchGate or Google Scholar. For publications specific for our space exploration projects see http://eoa.ssl.berkeley.edu

Recent Publications from 2015 to present

452. Geng, T. & Mathies, R. A. (2015). Minimizing Inhibition of PCR-STR Typing Using Digital Agarose Droplet Microfluidics. Forensic Science International: Genetics, 14, pp 203-209.

453. Novak, R., Wartmann, D., Mathies, R. A., Dostálek, & Ertl, P. (2015). Microfluidic Platform for Multiplexed Cell Sampling and Time-Resolved SPR-Based Cytokine Sensing in 6th European Conference of the International Federation for Medical and Biological Engineering. Springer International Publishing, pp 785-788.

454. Jung, Y. K., Kim, J. and Mathies, R. A. (2015). Microfluidic Linear Hydrogel Array for Multiplexed Single Nucleotide Polymorphism (SNP) Detection. Analytical Chemistry, 87(6), 3165-3170.

455. Valley, D. T., Hoffman, D. P., and Mathies, R. A. (2015). Reactive and Unreactive Pathways in a Photochemical Ring Opening Reaction from 2D Femtosecond Stimulated Raman. Physical Chemistry Chemical Physics 17(14), 9231-9240.

456. Dietz, D. R., and Mathies, R. A. (2015). Molecular Orientation and Optical Properties of 3,3’-Diethylthiatricarbocyanine Iodide Adsorbed to Gold Surfaces: Consequences for Surface-Enhanced Resonance Raman Spectroscopy. J. Phys. Chem. C, 2015, 119 (18), pp 9980–9987.

457. Novak, R., Hart, K., and Mathies, R. A. (2015). Single Cell Measurement of Telomerase Expression and Splicing Using Microfluidic Emulsion Cultures, Nucleic Acids Research, doi:10.1093/nar/gkv477.

458. Hoffman, D. P., Leblebici, S. Y., Schwartzberg, A. M., Mathies, R. A. (2015). Exciton Mobility in Organic Photovoltaic Heterojunctions from Femtosecond Stimulated Raman. J. Phys. Chem. Letters. 6, 2919-2923.

459. Geng, T. and Mathies, R. A. (2016). Forensic Typing of Single Cells Using Droplet Microfluidics, in Microfluidic Methods for Molecular Biology, Springer International Publishing, eds. C. Lu and S. S. Verbridge), p. 71-94

460. Linshiz, G., Jensen, E., Stawski, N., Bi, C., Elsbree, N., Jiao, H., Kim, J., Mathies, R., Keasling, J. D., and Hillson, N. J. (2016). End-to-End Automated Microfluidic Platform for Synthetic Biology: From Design to Functional Analysis. Journal of Biological Engineering. (2016) 10:3 DOI: 10.1186/s13036-016-0024-5

461. Cai, H., Parks, J. W., Wall, T. A., Stott, M. A., Stambaugh, A., Alfson, K., Griffiths, A., Mathies, R. A., Carrion, R., Patterson, J. L., Hawkins, A. R. and Schmidt, H. (2015). Diagnosis of Ebola Infection via Amplification-free Direct Detection of Single Nucleic Acids on a Chip. Scientific Reports 5, 14494. DOI: 10.1038/srep14494 1

462a. Dalton, D. M., Ellis, S. R., Nichols, E. M., Mathies, R. A., Toste, F. D., Bergman, R. G., and Raymond, K. N. (2015). Supramolecular Ga4L612- Cage Photosensitizes 1,3-rearrangement of Encapsulated Guest via Photoinduced Electron Transfer. J. Amer. Chem. Soc., 137, 10128-10131..

462b. Mathies, R.A. (2015) A Coherent Picture of Vision, Nature Chemistry, 7, 945-947.

463. Yang, Y., Heyne, K., Lagarias, J. C., Mathies, R. A., and Dasgupta, J. (2015). Non-bonded Interactions Drive the Sub-Picosecond Bilin Photoisomerization in the Pfr State of Phytochrome Cph1. Chem Phys Chem doi:10.1002/cphc.201501073.

464. Jung, Y. K., Kim, J., and Mathies, R. A. (2016). Microfluidic Hydrogel Arrays for Direct Genotyping of Clinical Sample. Biosensors and Bioelectronics, 79, 371-378.

465. Hoffman, D. P., and Mathies, R. A. (2016). Femtosecond Stimulated Raman Exposes the Role of Vibrational Coherence in Condensed-Phase Photoreactivity. Accts. Chem. Res., DOI: 10.1021/acs.accounts.5b00508

466. Kim, J., Stockton, A. M., Jensen, E. C., and Mathies, R. A. (2016). Pneumatically actuated microvalve circuits for programmable automation of chemical and biochemical analysis, invited review in Lab Chip, 16, 812 – 819, DOI: 10.1039/C5LC01397F.

467. Duberow, D.P., Brait, M., Hoque, M.P., Theodorescu, D., Sidransky, D., Dasgupta, S., and Mathies, R.A. (2016) High-performance detection of somatic D-Loop mutation in urothelial cell carcinoma patients by polymorphism ratio sequencing, Journal of Molecular Medicine, 94, 1015-1024, DOI: 10.1007/s00109-016-1407-2

468. Dietze, D. R. and Mathies, R. A. (2016), Femtosecond Stimulated Raman Spectroscopy. ChemPhysChem. 17, 1224-1251, doi:10.1002/cphc.201600104.

469. Du, K., Cai, H., Park, M., Wall, T.A., Stott, M.A., Alfson, K.J., Griffiths, A., Carrion, R., Patterson, J.L., Hawkins, A.R., Schmidt, H. and Mathies, R.A. (2017) Multiplexed Efficient On-Chip Sample Preparation and Sensitive Amplification-Free Detection of Ebola Virus, Biosensors Bioelectronics 91, 489-496.

470. Park, M., Kornienko, N., Reyes-Lillo, S.E., Lai, M., Neaton, J.B., Yang, P. and Mathies, R.A. (2017) Critical Role of Methylammonium Librational Motion in Methylammonium Lead Iodide (CCH3NH3PbI3) Perovskite Photochemistry, Nano Letters, 17, 4151-4157

471. Mathies, R. A., Razu, M. E., Kim, J., Stockton, A.B., Turin, P., and Butterworth, A. (2017) Feasibility of Detecting Bioorganic Compounds in Enceladus Plumes with the Enceladus Organic Analyzer (EOA), Astrobiology, 17, 902-912.

472. Schnedermann, C., Liebel, M., Spillane, K.M., Lugtenburg, J., Fernandez, I., Kukura, P. and Mathies, R.A. (2018) Evidence for a vibrational phase isotope effect in the photochemistry of vision. Nature Chemistry 10, 449-455, doi.org/10.1038/s41557-018-0014-y.

473. Scott Ellis; David Hoffman; Myeongkee Park; Richard Mathies (2018) Difference Bands in Time Resolved Femtosecond Stimulated Raman Spectra of Photoexcited Intermolecular Electron Transfer from Chloronapthalene to Tetracyanoetheylene, J. Phys. Chem. A 122, 3594-3605, DOI: 10.1021/ acs.jpca.8b00318

474. Park, M., Neukirch, A.J., Reyes-Lillo, S.E., Lai, M., Ellis, S.R., Dietze, D., Neaton, J.B., Yang, P., Tretiak, S. and Mathies, R.A. (2018) Excited-State vibrational dynamics toward the polaron in methylammonium lead iodide. Nature Communications, 9:2525 | DOI: 10.1038/s41467-018-04946-7.: 10.1038/s41467-018-04946-7 DOI: 10.1038/s41467-018-04946-7

475. Duca, Z.A., Tan, G.K., Cantrell, T., van Enige, M., Dorn, M., Cato, M., Speller, N.C., Pital, A., Mathies, R.A., and Stockton, A.M. (2018) Operation of pneumatically-actuated membrane-based microdevices for in situ analysis of extraterrestrial organic molecules after prolonged storage and in multiple orientations with respect to Earth’s gravitational field, Sensors Actuators B: Chemical, 272, 229-235.

476. Ellis, S. R., Dietze, D. R., Rangel, T., Brown-Altvater, F., Neaton, J.B. and Mathies, R. A. Resonance Raman Characterization of Tetracene Monomer and Nanocrystals: Excited State Lattice Distortions Concurrent with Efficient Singlet Fission, Physical Chemistry Chemical Physics, under review.

477. Rothbauer, M., Charwat, V., Bachmann, B., Sticker, D., Novak, R., Wanzenbroeck, H., Mathies, R.A., Ertl, P. (2019) Monitoring transient cell-to-cell interactions in a multi-layered microfluidic lab-on-a-chip with integrated liquid handling, degasser and impedance biosensors, under review.

478. Qin, P., Park, M., Tamhankar, M., Carrion, R., Patterson, J., Yildiz, A., Mathies, R. and Ku, K. (2019) Rapid and Fully Microfluidic Ebola Virus Detection with CRISPER-Cas13a, under review.