Useful links

Always needing to be updated ...

EU Infrastructures

• Instruct-ERIC - Instruct-ERIC provides open access to high-end structural biology services and techniques

• MOSBRI - MOlecular-Scale Biophysics Research Infrastructure

NMR Links

• eNMR - NMR Computational Infrastructure: collection of NMR user-friendly platform for NMR structure determination and assignment

• BMRB - Biomolecular Magnetic Resonance Data Bank

Microbiology

• Bergey's Manual  -  Manual of determinative bacteriology

• Camera - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis

Molecular Biology

• EXPASy -  A series of small, useful tools - PROTPARAM (predict MW, pI), translate DNA-Protein, post-translational modifications...

• ProLinks - Use comparative genomics to predict function

• REFOLD -  Very useful webpage for refolding proteins for proteins homologous to our target

• SignalFind - Signal Peptide Server (TatFind, TatLipo, ...)

• SignalP - Signal peptide identification

• SMART  -  Analysis of domain architectures in protein or genes

• STRING -  Known and Predicted Protein-Protein Interactions

• BLAST - Basic Local Alignment Search Tool, that finds regions of similarity between biological sequences

• ClustalOmega - (Within EMBL-EBI) multiple sequence alignment program that generates alignments between three or more sequences

Spectroscopy

• BeStSel - Secondary structure determination and fold recognition from protein circular dichroism spectra (it is possible to analyse data from temperature ramps in batch mode)

• DichroWeb - Online program to analyse circular dichroism spectra (requires registration) 

• DichroMatch - Data bank of circular dichroism spectra; enables comparison of own spectrum with others in data bank

Others

• 2Struct - Compare structures, obtain secondary structure percentages from coordinates PDB ID or model structures

• AlphaFill - Algorithm based on sequence and structure similarity that “transplants” missing ligands, cofactors and (metal) ions to the AlphaFold models

•  UniProt - Resource of protein sequence and functional information

• AlphaFold Data base - AlphaFold Protein Structure Data Base