Our work Loop Catalog: a comprehensive HiChIP database of human and mouse samples is accepted at Genome Biology !!! (Website) (Manuscript)
Communicated DiffHiChIP: Identifying differential chromatin contacts from HiChIP data. (GitHub) (Preprint)
Submitted NIH R35 grant 1R35GM160043-01 (Predicting causality of genes and regulatory regions using 3D epigenome and graph-based deep learning) (under review).
Joined Empirico as a lead data scientist.
Our work Identifying genetic variants associated with chromatin looping and genome function is now published at Nature Communications (Link)
Our work Identifying genetic variants associated with chromatin looping and genome function is now accepted at Nature Communications !!!
Presented work Identifying genetic variants associated with chromatin looping and genome function to CSHL Genome Organization and Nuclear Function 2024 meeting.
Submitted abstract Identifying genetic variants associated with chromatin looping and genome function to CSHL Genome Organization and Nuclear Function 2024 meeting.
Our work Identifying genetic variants associated with chromatin looping and genome function has been accepted for a Poster at RSGDREAM 2023
Our work Loop Catalog: a comprehensive database of uniformly processed human and mouse HiChIP datasets curated from the literature has been accepted for a Poster at RSGDREAM 2023
Our work A multiscale 3D chromatin architecture controls lineage commitment has been accepted for a talk at RSGDREAM 2023
Manuscript submitted as a corresponding author !!! Communicated our work "Identifying genetic variants associated with chromatin looping and genome function" to Nature Communications !!!! Links to be shared soon !!!
Our work A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS (Collaboration with Dr. Katia Georgopoulos, Harvard Medical School) has now been provisionally accepted in Cell !!!! Bingo !!!
Our work Identifying genetic variants associated with chromatin looping and genome organization is presented (oral presentation) at ISMB/ECCB 2023 as part of the RegSys COSI track.
Our work Identifying genetic variants associated with chromatin looping and genome organization is accepted for a talk at ISMB/ECCB 2023 as part of the RegSys COSI track.
Presented "Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers" at the inter-lab journal club (various bioinformatics labs in La Jolla Institute for Immunology and UCSD).
NIH R03 grant (1R03OD034494-01) acceptance - Using Common Fund datasets for prioritization of disease-associated genetic variants: Assisted my supervisor Dr. Ferhat Ay in preparing the grant proposal and generating initial results. (link)
Presented our work DiffHiChIP in ISMB 2022.
Presented our work DiffHiChIP in RECOMB 2022.
Presented our work on prioritizing disease-associated SNPs using chromatin loops in RECOMB 2022.
Our work DiffHiChIP: Identifying differential chromatin contacts from HiChIP/PLAC-seq data (authors: Sourya Bhattacharyya*, Daniela Salgado Figueroa* and Ferhat Ay) is accepted for oral presentation at ISMB 2022.
Our manuscript "Single-cell eQTL analysis of activated T cell subsets reveals activation and cell-type-dependent effects of disease-risk variants" has now been published in Science Immunology. Check this paper here.
Our work DiffHiChIP: Identifying differential chromatin contacts from HiChIP/PLAC-seq data (authors: Sourya Bhattacharyya*, Daniela Salgado Figueroa* and Ferhat Ay) is accepted for poster presentation at RECOMB 2022.
Our work Prioritization of disease-associated SNPs using chromatin loops (authors: Joaquin Reyna, Sourya Bhattacharyya, Nikhil Rao, Abhijit Chakraborty and Ferhat Ay) is accepted for poster presentation at RECOMB 2022.
Presented our work on "Identifying functional variants using 3D chromatin loops" at the inter-lab journal club (various bioinformatics labs in La Jolla Institute for Immunology and UCSD).
Our manuscript "Single-cell eQTL analysis of activated T cell subsets reveals activation and cell-type-dependent effects of disease-risk variants" has now been accepted in Science Immunology.
First grant !!!!! Our team got the first prize in the D-Challenge 2021 organized by thesugarscience.org, and got the grant of $20,000 to pursue research towards type-1 Diabetes (T1D) in order to understand the regulatory changes and genes related to T1D, using chromatin conformation data. For details, check this link.
Our manuscript "COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types" has now been published in Nature Communications. Check this paper here.
Our manuscript "COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell types" has been accepted in Nature Communications.
Our work "Single-cell eQTL analysis of activated T cell subsets reveals activation and cell-type-dependent effects of disease-risk variants" is now communicated in Science Immunology.
Our work on promoter interacting eQTLs (pieQTLs) is now featured in various news articles, summarized here.