Publications
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Total: 68 papers
First author: 20 papers
As the main advisor for the first author: 20 papers
Corresponding author: 37 papers
Last author: 23 papers
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Original articles
* Corresponding author
† As the main advisor for the first author
[69] Yu, Z., Lee, C., Kerfahi, D., Li, N., Yamamoto, N., Yang, T., Lee, H., Zhen, G., Song, Y., Shi, L., Dong, K.* (2024). Elevational dynamics in soil microbial co-occurrence: Disentangling biotic and abiotic influences on bacterial and fungal networks on Mt. Seorak, Soil Ecology Letters 6, (4) 240246. Link
[68] Woo, C., Bhuiyan, M.I.U., Eo, K.Y., Lee, W.-S., Kimura, J., Yamamoto, N.*† (2023). Diversity of fecal parasitomes of wild carnivores inhabiting Korea, including zoonotic parasites and parasites of their prey animals, as revealed by 18S rRNA gene sequencing, International Journal for Parasitology: Parasites and Wildlife 21, 179–184. Link
[67] Woo, C., Kumari, P., Eo, K.Y., Lee, W.-S., Kimura, J., Yamamoto, N.*† (2023). Combining vertebrate mitochondrial 12S rRNA gene sequencing and shotgun metagenomic sequencing to investigate the diet of the leopard cat (Prionailurus bengalensis) in Korea, PLoS ONE 18, (1) e0281245. Link
[66] Lee, S.-K., Woo, C., Lee, E.J., Yamamoto, N.* (2022). Using high-throughput sequencing to investigate the dietary composition of the Korean water deer (Hydropotes inermis argyropus): A spatiotemporal comparison, Scientific Reports 12, 22271. Link
[65] Newsham, K.*, Danielsen, B.K., Biersma, E.M., Elberling, B., Hillyard, G., Kumari, P., Prieme, A., Woo, C., Yamamoto, N. (2022). Rapid response to experimental warming of a microbial community inhabiting High Arctic patterned ground soil, Biology 11, (12) 1819. Link
[64] Woo, C., Bhuiyan, M.I.U., Kim, D., Kumari, P., Lee, S.-K., Park, J.Y., Dong, K., Lee, K., Yamamoto, N.*† (2022). DNA metabarcoding-based study on bacteria and fungi associated with house dust mites (Dermatophagoides spp.) in settled house dust, Experimental and Applied Acarology 88, (3–4) 329–347. Link
[63] Woo, C., Kumari, P., Eo, K.Y.*, Lee, W.-S., Kimura, J., Yamamoto, N.*† (2022). Using DNA metabarcoding and a novel canid-specific blocking oligonucleotide to investigate the composition of animal diets of raccoon dogs (Nyctereutes procyonoides) inhabiting the waterside area in Korea, PLoS ONE 17, (7) e0271118. Link
[62] Kumari, P., Tripathi, B.M., Dong, K., Eo, K.Y.*, Lee, W.-S., Kimura, J., Yamamoto, N.*† (2022). The host-specific resistome in environmental feces of Eurasian otters (Lutra lutra) and leopard cats (Prionailurus bengalensis) revealed by metagenomic sequencing, One Health 14, 100385. Link
[61] Okamoto, Y., Ichinohe, N., Woo, C., Han, S.-Y., Kim, H.-H., Ito, S., Nakamura, C., Kimura, J., Nagaoka, K.*, Yamamoto, N.* (2021). Contrasting gut microbiota in captive Eurasian otters (Lutra lutra) by age, Archives of Microbiology 203, (9) 5405–5416. Link
[60] Kumari, P., Eo, K.Y., Lee, W.-S., Kimura, J., Yamamoto, N.*† (2021). DNA-based detection of Leptospira wolffii, Giardia intestinalis and Toxoplasma gondii in environmental feces of wild animals in Korea, Journal of Veterinary Medical Science 83, (5) 850–854. Link
[59] Shinohara, N.*, Woo, C., Yamamoto, N., Hashimoto, K., Yoshida-Ohuchi, H., Kawakami, Y. (2021). Comparison of DNA sequencing and morphological identification techniques to characterize environmental fungal communities, Scientific Reports 11, 2633. Link
[58] Woo, C., Yamamoto, N.*† (2020). Falling bacterial communities from the atmosphere, Environmental Microbiome 15, 22. Link
[57] Precha, N., Kliengchuay, W., Woo, C., Yamamoto, N.*, Tantrakarnapa, K.* (2020). Fungal assemblages on indoor surfaces with visible mold growth in homes after the 2016 flood disaster in Thailand, Applied Sciences 10, (15) 5322. Link
[56] Xu, S., Yamamoto, N.*† (2020). Anti-infective nitazoxanide disrupts transcription of ribosome biogenesis-related genes in yeast, Genes & Genomics 42, (8) 915–926. Link
[55] Kumari, P., Dong, K., Eo, K.Y., Lee, W.-S., Kimura, J., Yamamoto, N.*† (2019). DNA metabarcoding-based diet survey for the Eurasian otter (Lutra lutra): Development of a Eurasian otter-specific blocking oligonucleotide for 12S rRNA gene sequencing for vertebrates, PLoS ONE 4, (12) e0226253. Link
[54] Dong, K., Woo, C., Yamamoto, N.*† (2019). Plant assemblages in atmospheric deposition, Atmospheric Chemistry and Physics 19, (18) 11969–11983. Link
[53] Newsham, K.K.*, Tripathi, B.M., Dong, K., Yamamoto, N., Adams, J.M., Hopkins, D.W. (2019). Bacterial community composition and diversity respond to nutrient amendment but not warming in a southern maritime Antarctic soil, Microbial Ecology 78, (4) 974–984. Link
[52] Luhung, I., Wu, Y., Xu, S., Yamamoto, N., Chang, V.W.C.*, Nazaroff, W.W. (2018). Exploring temporal patterns of bacterial and fungal DNA accumulation on a ventilation system filter for a Singapore university library, PLoS ONE 13, (7) e0200820. Link
[51] Woo, C., An, C., Xu, S., Yi, S.-M., Yamamoto, N.*† (2018). Taxonomic diversity of fungi deposited from the atmosphere, ISME Journal 12, (8) 2051–2060. Link
[50] Mizukoshi, M.*, Kurosaki, Y., Yamamoto, N., Noguchi , M., Iizuka, A., Yamasaki, A., Yanagisawa, Y. (2018). Reduction of acetaldehyde formation from pulverized solid woods by thermal and chemical treatments, Wood Science and Technology 52, (2) 567–579. Link
[49] An, C., Woo, C., Yamamoto, N.*† (2018). Introducing DNA-based methods to compare fungal microbiota and concentrations in indoor, outdoor, and personal air, Aerobiologia 34, (1) 1–12. Link
[48] Luhung, I., Wu, Y., Xu, S., Yamamoto, N., Chang, V.W.C.*, Nazaroff, W.W. (2017). DNA accumulation on ventilation system filters in university buildings in Singapore, PLoS ONE 12, (10) e0186295. Link
[47] Xu, S., Yamamoto, N.*† (2017). mRNA-Seq reveals accumulation followed by reduction of small nuclear and nucleolar RNAs in yeast exposed to antiviral ribavirin, FEMS Yeast Research 17, (7) fox067. Link
[46] Dong, K., Moroenyane, I., Tripathi, B., Kerfahi, D., Takahashi, K., Yamamoto, N., An, C., Cho, H., Adams, J.* (2017). Soil nematodes show a mid-elevation diversity maximum and elevational zonation on Mt. Norikura, Japan, Scientific Reports 7, 3028. Link
[45] An, C., Okamoto, Y., Xu, S., Eo, K.Y.*, Kimura, J., Yamamoto, N.*† (2017). Comparison of fecal microbiota of three captive carnivore species inhabiting Korea, Journal of Veterinary Medical Science 79, (3) 542–546. Link
[44] Kumari, P.*, Woo, C., Yamamoto, N., Choi, H.-L.* (2016). Variations in abundance, diversity and community composition of airborne fungi in swine houses across seasons, Scientific Reports 6, 37929. Link
[43] Lee, S., An, C., Xu, S., Lee, S., Yamamoto, N.*† (2016). High-throughput sequencing reveals unprecedented diversities of Aspergillus species in outdoor air, Letters in Applied Microbiology 63, (3) 165–171. Link
[42] Xu, S., An, C., Kim, S., Lee, S., Lee, K., Yamamoto, N.*† (2016). Effects of the biocides on the culturable house dust-borne bacterial compositions and diversities, Human and Ecological Risk Assessment 22, (5) 1133–1146. Link
[41] An, C., Yamamoto, N.*† (2016). Fungal compositions and diversities on indoor surfaces with visible mold growths in residential buildings in the Seoul Capital Area of South Korea, Indoor Air 26, (5) 714–723. Link
[40] Lee, S., Yamamoto, N.*† (2015). Accuracy of the high-throughput amplicon sequencing to identify species within the genus Aspergillus, Fungal Biology 119, (12) 1311–1321. Link
[39] Mizukoshi, M.*, Kumagai, K., Yamamoto, N., Noguchi , M., Yoshiuchi, K., Kumano, H., Ozawa, M., Matsui, T., Sakabe, K., Yanagisawa, Y. (2015). In-situ real-time monitoring of volatile organic compound exposure and heart rate variability for patients with multiple chemical sensitivity, International Journal of Environmental Research and Public Health 12, (10) 12446–12465. Link
[38] Lee, S., Xu, S., Bivila, C.P., Lee, H., Park, M.S., Lim, Y.W., Yamamoto, N.*† (2015). Triazole susceptibilities in thermotolerant fungal isolates from outdoor air in the Seoul Capital Area in South Korea, PLoS ONE 10, (9) e0138725. Link
[37] Yamamoto, N.*, Matsuki, Y., Yokoyama, H., Matsuki, H. (2015). Relationships among indoor, outdoor, and personal airborne Japanese cedar pollen counts, PLoS ONE 10, (6) e0131710. Link
[36] Yamamoto, N., Hospodsky, D., Dannemiller, K., Nazaroff, W.W., Peccia, J.* (2015). Indoor emissions as a primary source of airborne allergenic fungal particles in classrooms, Environmental Science & Technology 49, (8) 5098–5106. Link
[35] Lee, S., Kang, S., Bivila, C.P., Yoon, C.-Y., Yang, J., Yamamoto, N.*† (2015). Removal of viable airborne fungi from indoor environments by benzalkonium chloride-based aerosol disinfectants, Human and Ecological Risk Assessment 21, (8) 2174–2191. Link
[34] Hospodsky, D., Yamamoto, N., Nazaroff, W.W., Miller, D., Gorthala, S., Peccia, J.* (2015). Characterizing airborne fungal and bacterial concentrations and emission rates in six occupied children’s classrooms, Indoor Air 25, (6) 641–652. Link
[33] Yamamoto, N., Nazaroff, W.W., Peccia, J.* (2014). Assessing the aerodynamic diameters of taxon-specific fungal bioaerosols by quantitative PCR and next-generation DNA sequencing, Journal of Aerosol Science 78, 1–10. Link
[32] Yamamoto, N., Bibby, K.* (2014). Clustering of fungal community internal transcribed spacer sequence data obscures taxonomic diversity, Environmental Microbiology 16, (8) 2491–2500. Link
[31] Dannemiller, K., Lang-Yona, N., Yamamoto, N., Rudich, Y., Peccia, J.* (2014). Combining real-time PCR and next-generation DNA sequencing to provide quantitative comparisons of fungal aerosol populations, Atmospheric Environment 84, 113–121. Link
[30] Yamamoto, N., Dannemiller, K., Bibby, K., Peccia, J.* (2014). Identification accuracy and diversity reproducibility associated with internal transcribed spacer-based fungal taxonomic library preparation, Environmental Microbiology 16, (9) 2764–2776. Link
[29] Dannemiller, K., Reeves, D., Bibby, K., Yamamoto, N., Peccia, J.* (2014). Fungal High-throughput Taxonomic Identification tool for use with Next-Generation Sequencing (FHiTINGS), Journal of Basic Microbiology 54, (4) 315–321. Link
[28] Shendell, D.G.*, Mizan, S., Yamamoto, N., Peccia, J. (2012). Associations between quantitative measures of fungi in home floor dust and lung function among older adults with chronic respiratory disease: A pilot study, Journal of Asthma 49, (5) 502–509. Link
[27] Hospodsky, D., Qian, J., Nazaroff, W.W., Yamamoto, N., Rismani-Yazdi, H., Bibby, K., Peccia, J.* (2012). Human occupancy as a source of indoor airborne bacteria, PLoS ONE 7, (4) e34867. Link
[26] Lang-Yona, N., Dannemiller, K., Yamamoto, N., Burshtein, N., Peccia, J., Yarden, O., Rudich, Y.* (2012). Annual distribution of allergenic fungal spores in atmospheric particulate matter in the eastern Mediterranean: A comparative study between ergosterol and quantitative PCR analysis, Atmospheric Chemistry and Physics 12, 2681–2690. Link
[25] Yamamoto, N., Bibby, K., Qian, J., Hospodsky, D., Rismani-Yazdi, H., Nazaroff, W.W., Peccia, J.* (2012). Particle-size distributions and seasonal diversity of allergenic and pathogenic fungi in outdoor air, ISME Journal 6, (10) 1801–1811. Link
[24] Qian, J., Hospodsky, D., Yamamoto, N., Nazaroff, W.W., Peccia, J.* (2012). Size-resolved emission rates of airborne bacteria and fungi in an occupied classroom, Indoor Air 22, (4) 339–351. Link
[23] Shendell, D.G.*, Therkorn, J., Yamamoto, N., Kelly, S.W., Foster, C. (2012). Outdoor near-roadway, community and residential pollen, carbon dioxide and particulate matter measurements in the urban core of an agricultural region in central CA, Atmospheric Environment 50, 103–111. Link
[22] Yamamoto, N., Shendell, D.G.*, Peccia, J. (2011). Assessing allergenic fungi in house dust by floor wipe sampling and quantitative PCR, Indoor Air 21, (6) 521–530. Link
[21] Yamamoto, N.*, Schmechel, D., Chen, B.T., Lindsley, W.G., Peccia, J. (2011). Comparison of quantitative airborne fungi measurements by active and passive sampling methods, Journal of Aerosol Science 42, (8) 499–507. Link
[20] Low, S.Y., Dannemiller, K., Yao, M., Yamamoto, N., Peccia, J.* (2011). The allergenicity of Aspergillus fumigatus conidia is influenced by growth temperature, Fungal Biology 115, (7) 625–632. Link
[19] Shendell, D.G.*, Foster, C., Sexton, J., Roden, J., Yamamoto, N., Kelly, S.W., Chandler, L., Venables, M., Williams, S., Burr, S., Wagenleitner, V., Anderson, N. (2011). Knowledge and awareness of symptoms, triggers and treatment among older adults with asthma and/or COPD: Community-based participatory research in a central California county, Journal of Asthma and Allergy Educators 2, (2) 81–90. Link
[18] Mizukoshi, A.*, Kumagai, K., Yamamoto, N., Noguchi, M., Yoshiuchi, K., Kumano, H., Yanagisawa, Y. (2010). A novel methodology to evaluate health impacts caused by VOC exposures using real-time VOC and Holter monitors, International Journal of Environmental Research and Public Health 7, (12) 4127–4138. Link
[17] Hospodsky, D., Yamamoto, N., Peccia, J.* (2010). Accuracy, precision, and detection limits of quantitative PCR for airborne bacteria and fungi, Applied and Environmental Microbiology 76, (21) 7004–7012. Link
[16] Yamamoto, N.*, Nishikawa, J., Sakamoto, M., Shimizu, T., Matsuki, H. (2010). Indoor and outdoor concentrations of Japanese cedar pollens and total suspended particulates: A case study at a kindergarten in Japan, Building and Environment 45, (3) 792–797.
[15] Yamamoto, N.*, Kimura, M., Matsuki, H., Yanagisawa, Y. (2010). Optimization of a real-time PCR assay to quantitate airborne fungi collected on a gelatin filter, Journal of Bioscience and Bioengineering 109, (1) 83–88.
[14] Yamamoto, N.*, Shendell, D.G., Winer, A.M., Zhang, J. (2010). Residential air exchange rates in three major U.S. metropolitan areas: Results from the Relationship Among Indoor, Outdoor, and Personal Air Study 1999–2001, Indoor Air 20, (1) 85–90.
[13] Yamamoto, N.*, Matsuzaka, Y., Kimura, M., Matsuki, H., Yanagisawa, Y. (2009). Comparison of dry- and wet-based fine bead homogenizations to extract DNA from fungal spores, Journal of Bioscience and Bioengineering 107, (4) 464–470.
[12] Yamashita, K.*, Yamamoto, N., Mizukoshi, A., Noguchi, M., Ni, Y., Yanagisawa, Y. (2009). Compositions of volatile organic compounds emitted from melted virgin and waste plastic pellets, Journal of the Air & Waste Management Association 59, (3) 273–278.
[11] Yamamoto, N.*, Muramoto, A., Yoshinaga, J., Shibata, K., Endo, M., Endo, O., Hirabayashi, M., Tanabe, K., Goto, S., Yoneda, M., Shibata, Y. (2007). Comparison of carbonaceous aerosols in Tokyo before and after implementation of diesel exhaust restrictions, Environmental Science & Technology 41, (18) 6357–6362.
[10] Yamamoto, N.*, Matsuki, H., Yanagisawa, Y. (2007). Application of the personal aeroallergen sampler to assess personal exposures to Japanese cedar and cypress pollens, Journal of Exposure Science and Environmental Epidemiology 17, (7) 637–643.
[9] Yamamoto, N.*, Hikono, M., Koyama, H., Kumagai, K., Fujii, M., Yanagisawa, Y. (2006). A passive sampler for airborne coarse particles, Journal of Aerosol Science 37, (11) 1442–1454.
[8] Yamamoto, N.*, Takahashi, Y., Yoshinaga, J., Tanaka, A., Shibata, Y. (2006). Size distributions of soil particles adhered to children’s hands, Archives of Environmental Contamination and Toxicology 51, (2) 157–163.
[7] Yamamoto, N.*, Kumagai, K., Fujii, M., Shendell, D.G., Endo, O., Yanagisawa, Y. (2005). Size dependent collection of micrometer-sized particles using nylon mesh, Atmospheric Environment 39, (20) 3675–3685.
[6] Endo, M., Yamamoto, N., Yoshinaga, J.*, Yanagisawa, Y., Endo, O., Goto, S., Yoneda, M., Shibata, Y., Morita, M. (2004). 14C measurement for size-fractionated airborne particulate matters, Atmospheric Environment 38, (36) 6263–6267.
[5] Yamamoto, N.*, Shinozuka, Y., Kumagai, K., Fujii, M., Yanagisawa, Y. (2004). Particle size distribution quantification by microscopic observation, Journal of Aerosol Science 35, (10) 1225–1234.
[4] Yamamoto, N.*, Fujii, M., Kumagai, K., Yanagisawa, Y. (2004). Time course shift in particle penetration characteristics through capillary pore membrane filters, Journal of Aerosol Science 35, (6) 731–741.
[3] Shinohara, N.*, Fujii, M., Kumagai, K., Yamamoto, N., Yamasaki, A., Yanagisawa, Y. (2004). Field validation of an active sampling cartridge as a passive sampler for long-term carbonyl monitoring, Journal of the Air & Waste Management Association 54, (4) 419–424.
[2] Shibata, K., Endo, M., Yamamoto, N., Yoshinaga, J.*, Yanagisawa, Y., Endo, O., Goto, S., Yoneda, M., Shibata, Y., Morita, M. (2004). Temporal variation of radiocarbon concentration in airborne particulate matter in Tokyo, Radiocarbon 46, (1) 485–490.
[1] Yamamoto, N.*, Fujii, M., Endo, O., Kumagai, K., Yanagisawa, Y. (2002). Broad range observation of particle deposition on greased and non-greased impaction surfaces using a line-sensing optical microscope, Journal of Aerosol Science 33, (12) 1667–1679.
Letters, Preprints, or Corrigenda
[6] Nanayakkara, S., Yamamoto, N., Harada, K.* (2021). Intranasal levels of lead estimated from airborne pollen and urinary lead levels in Japan, Journal of Allergy and Clinical Immunology 148, (2) 654−655. Link
[5] Harada, K.*, Harada Sassa, M., Yamamoto, N. (2020). Letter to the editor on “An imperative need for research on the role of environmental factors in transmission of novel coronavirus (COVID-19)”, Back to basics, Environmental Science & Technology 54, (13) 7738−7739. Link
[4] Woo, C., An, C., Xu, S., Yi, S.-M., Yamamoto, N.* (2020). Correction: Taxonomic diversity of fungi deposited from the atmosphere, ISME Journal 14, 657. Link
[3] Dong, K., Woo, C., Yamamoto, N.* (2019). Plant assemblages in atmospheric deposition, Atmospheric Chemistry and Physics Discussions, https://doi.org/10.5194/acp-2019-487. Link
[2] Lang-Yona, N., Dannemiller, K., Yamamoto, N., Burshtein, N., Peccia, J., Yarden, O., Rudich, Y.* (2011). Annual distribution of allergenic fungal spores in atmospheric particulate matter in the eastern mediterranean; a comparative study between ergosterol and quantitative PCR analysis, Atmospheric Chemistry and Physics Discussions 11, 28689–28711. Link
[1] Yamamoto, N., Matsuki, H., Yanagisawa, Y., (2006). Application of the personal aeroallergen sampler (PAAS) to characterize children’s exposures to aeroallergens, Epidemiology 17, (6) S291.