Publications
A multi-domain model for microcirculation in optic nerve: Blood flow and oxygen transport, (with Zilong Song, Robert Eisenberg, Huaxiong Huang), Physica D: Nonlinear Phenomena, 24 June 134272, 2024.
NCART: Neural Classification and Regression Tree for tabular data,(with Jiaqi Luo), Pattern Recognition, 110578, 2024.
VSG-GAN: A High Fidelity Image Synthesis Method with Semantic Manipulation in Retinal Fundus Image, (with Junjie Liu, Ping He, Sirong Wu, Xi Luo, Yuhui Deng, and Huaxiong Huang) , Biophysical Journal, accepted, DOI: 10.1016/j.bpj.2024.02.019, 2023.
Coupled chemical reactions: Effects of electric field, diffusion, and boundary control, (with Robert Eisenberg, Zilong Song, Huaxiong Huang), Phys. Rev. E 108, 064413, (2023).
Assessing the Nonlinear Association of Environmental Factors with Antibiotic Resistance Genes (ARGs) in the Yangtze River Mouth, China, (with Jiazheng Miao, Yikai Ling, Xiaoyuan Chen, Siyuan Wu, Sajid Umar, Benjamin D. Anderson), Sci Rep 13, 20367 (2023). https://doi.org/10.1038/s41598-023-45973-9
Mathematical Model for Chemical Reactions in Electrolytes Applied to Cytochrome c Oxidase: An Electro-Osmotic Approach, (with Robert Eisenberg, Zilong Song, Huaxiong Huang), Computation 11 (12), 253, (2023).
TRBoost: A Generic Gradient Boosting Machine based on Trust-region Method, (with Jiaqi Luo, Zihao Wei, Junkai Man), Applied Intelligence, (2023), https://doi.org/10.1007/s10489-023-05000-w.
Droplet dynamics: A phase-field model of mobile charges, polarization, and its leaky dielectric approximation, (with Yuzhe Qin, Huaxiong Huang, Zilong Song), Physics of Fluids, 35, 000000 (2023); doi: 10.1063/5.0159956 (Corr)
Mimicking effects of cholesterol in lipid bilayer membranes by self- assembled amphiphilic block copolymers, (with Xiaoyuan Wang, Fredric S Cohen, Jiwei Zhang, Yongqiang Cai), Soft Matter, DOI: 10.1039/D3SM00804E, 2023.
Diffuse Interface Model for Cell Interaction and Aggregation with Lennard-Jones Type Potential, (with Lingyue Shen, Ping Lin, Zhiliang Xu), Computer Methods in Applied Mechanics and Engineering, Volume 415, 1 October 2023, 116257, https://doi.org/10.1016/j.cma.2023.116257 . (Corr)
Homogenization theory of ion transportation in multicellular tissue, (with Xiao, Chun, Huaxiong Huang, Tao Yu, and Xingye Yue), Discrete and Continuous Dynamical Systems B 28, no. 11 (2023): 5701–28. https://doi.org/10.3934/dcdsb.2023072. (Corr)
Multi-objective learning and explanation for stroke risk assessment in Shanxi province, (with Ma, Jing, Yiyang Sun, Junjie Liu, Huaxiong Huang, Xiaoshuang Zhou), Scientific Reports 12, no. 1 (December 2022): 22337. https://doi.org/10.1038/s41598-022-26595-z. (Corr)
A level set method for the simulation of moving contact lines in three dimensions, (with Quan Zhao, Weiqing Ren), Commun. Comput. Phys., 32(5), 10.4208/cicp.OA-2022-0021, 2022
Analysis of clinical predictors of kidney diseases in type 2 diabetes patients based on machine learning, (with Dongna Hui, Yiyang Sun, et al,), International Urology and Nephrology (2022): 1-10.
A phase field model for mass transport with semi-permeable interfaces, (with Yuzhe Qin, Huaxiong Huang, Yi Zhu, Chun Liu), J. Comput. Phys., Volume 464, 1 September 111334, 2022. (Corr)
Neural-PDE: a RNN based neural network for solving time dependent PDEs, (with Yihao Hu, Tong Zhao, Lizhen Lin, and Zhiliang Xu), Communications in Information and Systems, 22 (2), 223–245, 2022.
A Phase Field Model for Compressible Immiscible Fluids with a New Equation of State, (with Hao Dai, Zhiliang Xu, Ning Zhao, Chengxiang Zhu, Chunling Zhu), International Journal of Multiphase Flow, Volume 149, April 2022, 103937.
An Energy Stable Finite Element Scheme for A Phase-Field Model of Vesicle Motion and Deformation,(with Lingyue Shen, Zhiliang Xu, Ping Lin, Huaxiong Huang), SIAM Journal on Scientific Computing 44 (1), B122-B145, 2022. (Corr)
Analysis of main risk factors causing stroke in Shanxi Province based on machine learning models, (with Junjie Liu, Yiyang Sun, Jing Ma, Jiachen Tu, Yuhui Deng, Ping He, Rongshan Li, Fengyun Hu, Huaxiong Huang, Xiaoshuang Zhou), Informatics in Medicine Unlocked, 26, 100712, 2021. (Corr)
Tridomain Model for Potassium Clearance in Optic Nerve of Necturus, (with Yi Zhu, Shixin Xu, Robert S. Eisenberg, and Huaxiong Huang), Biophysical Journal , Volume 120, Issue 15, 3 August 2021, Pages 3008-3027 DOI: 10.1016/j.bpj.2021.06.020 . (Corr)
Numerical Method for Parameter Inference of Nonlinear ODEs with Partial Observations, (with Yu Chen, Jin Cheng, Arvind Gupta, Huaxiong Huang), Royal Society Open Science, 28 July 2021, https://doi-org.proxy.lib.duke.edu/10.1098/rsos.210171 (Corr)
Predicting the Risk of Rupture for Vertebral Aneurysm based on Geometric Features of Blood Vessels, (with Shixuan Li, Ruiqi Pan, Arvind Gupta, Yibin Fang, and Huaxiong Huang), Royal Society Open Science, 2021, 8: 210392. https://doi.org/10.1098/rsos.210392 . (Corr)
Homogenization of a discrete network model for chemical vapor infiltration process, (with Chun Xiao, Xingye Yue, Changjuan Zhang, Changrong Zhang), Comm. Math. Sci., Vol. 19, No. 7, pp. 1809-1826 , 2021.
Optic Nerve Microcirculation: Fluid Flow and Electrodiffusion, (with Yi Zhu, Robert Eisenberg, Huaxiong Huang), Phys. Fluids 33, 041906 (2021); https://doi.org/10.1063/5.0046323. (Corr)
Modelling the linkage between influenza infection and cardiovascular events via thrombosis, (with McCarthy, Z., Rahman, A. et al. ), Sci Rep 10, 14264 (2020).
A mathematical model for persistent post-CSD vasoconstriction, (with Joshua C. Chang, Carson C. Chow, K. C. Brennan, and Huaxiong Huang), PLos Computational Biology, 16 (7), e1007996 . (First)
An energy stable $C^0$ finite element scheme for a quasi-incompressible phase-field model of moving contact line with variable density , ( with Lingyue Shen, Huaxiong Huang, Pin Lin,Zilong Song), Journal of Computational Physics, Volume 405, 15 March 2020, 109179 . (Corr)
Non-Stokes Drag Coefficient in Single-Particle Electrophoresis: New Insights on a Classical Problem, (with Maijia Liao, Ming-Tzo Wei, H. Daniel Ou-Yang, Ping Sheng), Chin. Phys. B Vol. 28, No. 8 (2019) 084701.
Numerical method for Multi-Alleles Genetic Drift Problem, (with Xinfu Chen, Chun Liu, Xingye Yue), SIAM Journal on Numerical Analysis, 57(4), 1770–1788, 2019. (First)
Behavior of Different Numerical Schemes for the Population Genetic Drift Problems, (with Minxin Chen, Chun Liu, Xingye Yue, and Ran Zhang), BIT Numerical mathematics, https://doi.org/10.1007/s10543-019-00749-4 , 59(3), 797-821, 2019. (First)
Multi-Scale Models of Deformation of Blood Clots, (wiht M Alber, Z Xu, O Kim, S Britton, R Litvinov, J Weisel), Biophysical Journal 116 (3), 323a, 2019.
A Bidomain Model on Lens Microcirculation, (with Yi Zhu, Bob Eisenberg, Huaxiong Huang), Biophysical Journal 116 (6), 1171-1184 , 2019. (Corr)
Three-phase Model of Visco-elastic Incompressible Fluid Flow and its Computational Implementation, (with Mark Alber, Zhiliang Xu), Commun. Comput. Phys., 25 (2), 586-624, 2019. (First)
Vertebral artery fusiform aneurysm geometry in predicting rupture risk, (with Xiukun Zhao, Nathan Gold, Yibin Fang, Yongxin Zhang, Jianmin Liu, Arvind Gupta, Huaxiong Huang), Roy. Soc. Open. Sci., 5 (10), 180780, 2018. (Corr)
Deformation, Embolization, and Permeability of Partially Obstructive Blood Clots under Shear Flow (with Zhiliang Xu, Oleg Kim, Rustem I. Litvinov, John W. Weisel, Mark Alber), J. R. Soc. Interface 14: 20170441. http://dx.doi.org/10.1098/rsif.2017.0441, 2017. ( First)
Strong Binding of Platelet Integrin αIIbβ3 to Fibrin Clots: Potential Target to Destabilize Thrombi, (with Peter Hook, Rustem I. Litvinov, Oleg Kim, Zhiliang Xu, Joel Steven Bennett, Mark Alber, John W. Weisel), Sci. Rep. 7(1), DOI: 10.1038/s41598-017-12615-w, September 2017.
Homogenization Theory for Chemical Vapor Infiltration Process, (with Changjuan Zhang, Yun Bai, Xingye Yue), Comm. Math. Sci., 15(4), 1021-1040, 2017.
Reinitialization of the Level Set Function in 3D Simulation of Moving Contact Lines, (with Weiqing Ren), Commun. Comput. Phys., 20(5), 1163-1182, 2016. ( First)
Homogenization: in Mathematics or Physics, (with X.Y. Yue), Discrete Cont. Dyn-S, 9(5), pp. 1575-1590, 2016. ( First)
The Poisson Boltzmann Equation and the Charge Separation Phenomenon at the Silica-water Interface: A Holistic Approach, (with Maijia Liao, Li Wan, Chun Liu, Ping Sheng), Annals of Mathematical Science and Applications,1,217-249, 2016.
Homogenization of Thermal-Hydro-Mass Transfer Processes, (with X.Y. Yue), Discrete Cont. Dyn-S, 8(1), pp. 55 - 76, 2015. ( First)
Derivation of a Continuum Model and the Energy Law for Moving Contact Lines with Insoluble Surfactants, (With Zhen Zhang and Weiqing Ren), Phys. Fluids, 26, 062103, 2014.
Numerical Simulations of Asymmetrical Conductance Changes in Gramicidin Pores, (with Minxin Chen, Sheereen Maja, Xingye Yue,and Chun Liu),, Mol. Based Math. Biol., 2(1), ISSN (Online) 2299-3266, DOI: 10.2478/mlbmb-2014-0003, 2014.( First)
Self-Consistent Approach to Global Charge Neutrality in Electrokinetics: A Surface Potential Trap Model, (with Li Wan, Maijia Liao, Chun Liu, Ping Sheng), Phys. Rev. X, 4(1):011042. DOI:DOI: http://dx.doi.org/10.1103/PhysRevX.4.011042. ( First)
Energy Variational Approach for Ions Transport, (with Chun Liu and Ping Sheng), Comm. Math. Sci., 12(4), 779-789, 2014. ( First)