Tomita KM , Manlick PJ, Makoto K, Fujii S, Hyodo F, Miyashita T, Tsunoda T. (2025) The underappreciated roles of aboveground vertebrates on belowground communities. Trends in Ecology & Evolution 3401.
Okabe K, Fujii S, Makino S, Doi K, Nakamura S, Saitoh T, Shimada T. (2024) Mite composition in nests of the Japanese wood mouse, Apodemus speciosus (Rodentia: Muridae). Experimental and Applied Acarology 93: 761-786.
Potapov AM, Chen TW, Striuchkova AV, Alatalo JM, Alexandre D, Arbea J, Ashton T, Ashwood F, Babenko AB, Bandyopadhyaya I, Baretta C, Baretta D, Barnes AD, Bellini BC, Bendjaballah M, Berg MP, Bernava V, Bokhorst S, Bokova AI, Bolger T, Bouchard M, Brito RA, Buchori D, Castano-Meneses G, Chauvat M, Chomel M, Chow Y, Chown SL, Classen AT, Cortet J, Cuchta P, de la Pedrosa AM, De Lima ECA, Deharveng LE, Doblas Miranda E, Drescher J, Eisenhauer N, Ellers J, Ferlian O, Ferreira SSD, Ferreira AS, Fiera C, Filser J, Franken O, Fujii S, Koudji EG, Gao M, Gendreau-Berthiaume B, Gers C, Greve M, Hamra-Kroua S, Handa IT, Hasegawa M, Heiniger C, Hishi T, Holmstrup M, Homet P, Hoye TT, Ivask M, Jacques B, Janion-Scheepers C, Jochum M, Joimel S, Jorge BCS, Jucevica E, Kapinga EM, Kovac L, Krab EJ, Krogh PH, Kuu A, Kuznetsova N, Lam WN, Lin D, Lindo Z, Liu AWP, Lu JZ, Lucianez MJ, Marx MT, Mawan A, McCary MA, Minor MA, Mitchell GI, Moreno D, Nakamori T, Negri I, Nielsen UN, Ochoa-Hueso R, Oliveira Filho LCI, Palacios-Vargas JG, Pollierer MM, Ponge JF, Potapov MB, Querner P, Rai B, Raschmanova N, Rashid MI, Raymond-Leonard LJ, Reis AS, Ross GM, Rousseau L, Russell DJ, Saifutdinov RA, Salmon S, Santonja M, Saraeva AK, Sayer EJ, Scheunemann N, Scholz C, Seeber J, Shaw P, Shveenkova YB, Slade EM, Stebaeva S, Sterzynska M, Sun X, Susanti WI, Taskaeva AA, Tay LS, Thakur MP, Treasure AM, Tsiafouli M, Twala MN, Uvarov AV, Venier LA, Widenfalk LA, Widyastuti R, Winck B, Winkler D, Wu D, Xie Z, Yin R, Zampaulo RA, Zeppelini D, Zhang B, Zoughailech A, Ashford O, Klauberg-Filho O, Scheu S. (2024) Global fine-resolution data on springtail abundance and community structure. Scientific Data 11: 22.
Shimada T, Okabe K, Makino S, Nakamura S, Fujii S. (2023) Phoretic behavior of the pseudoscorpion Megachernes ryugadensis on the Japanese wood mouse Apodemus speciosus. The Science of Nature 110: 51.
Fujii S, Cornelissen JHC, van Logtestijn RSP, van Hal J, Berg MP. (2023) Downed deadwood habitat heterogeneity drives trophic niche diversity of soil-dwelling animals. Soil Biology and Biochemistry 187: 109193.
Potapov AM, Guerra CA, van den Hoogen J, Babenko A, Bellini BC, Berg MP, Chown SL, Deharveng L, Kováč Ľ, Kuznetsova NA, Ponge J-F, Potapov MB, Russell DJ, Alexandre D, Alatalo JM, Arbea JI, Bandyopadhyaya I, Bernava V, Bokhorst S, Bolger T, Castaño-Meneses G, Chauvat M, Chen T, Chomel M, Classen AT, Cortet J, Čuchta P, de la Pedrosa AM, Ferreira SSD, Fiera C, Filser J, Franken O, Fujii S, Koudji EG, Gao M, Gendreau-Berthiaume B, Gomez-Pamies DF, Greve M, Handa IT, Heiniger C, Holmstrup M, Homet P, Ivask M, Janion-Scheepers C, Jochum M, Joimel S, Jorge BCS, Jucevica E, Ferlian O, de Oliveira Filho LCI, Klauberg-Filho O, Baretta D, Krab EJ, Kuu A, de Lima ECA, Lin D, Lindo Z, Liu A, Lu J-Z, Luciañez MJ, Marx MT, McCary MA, Minor MA, Nakamori T, Negri I, Ochoa-Hueso R, Palacios-Vargas JG, Pollierer MM, Querner P, Raschmanová N, Rashid MI, Raymond-Léonard LJ, Rousseau L, Saifutdinov RA, Salmon S, Sayer EJ, Scheunemann N, Scholz C, Seeber J, Shveenkova YB, Stebaeva SK, Sterzyńska M, Sun X, Susanti WI, Taskaeva AA, Thakur MP, Tsiafouli M, Turnbull MS, Twala MN, Uvarov AV, Venier LA, Widenfalk LA, Winck BR, Winkler D, Wu D, Xie Z, Yin R, Zeppelini D, Crowther TW, Eisenhauer N, Scheu S. (2023) Globally invariant metabolism but density-diversity mismatch in springtails. Nature communications 14: 674.
Tanikawa T, Maie N, Fujii S, Sun L, Hirano Y, Mizoguchi T, Matsuda Y. (2023) Contrasting patterns of nitrogen release from fine roots and leaves driven by microbial communities during decomposition. Science of the Total Environment 855: 158809.
Potapov AM, Sun X, Barnes AD, Briones MJI, Brown GG, Cameron EK, Chang CH, Cortet J, Eisenhauer N, Franco ALC, Fujii S, Geisen S, Gongalsky KB, Guerra C, Haimi J, Handa IT, Janion-Scheepers C, Karaban K, Lindo Z, Mathieu J, Moreno ML, Murvanidze M, Nielsen UN, Scheu S, Schmidt O, Schneider C, Seeber J, Tsiafouli MA, Tuma J, Tiunov AV, Zaitsev AS, Ashwood F, Callaham M and Wall DH. (2022) Global monitoring of soil animal communities using a common methodology. Soil Organisms 94: 55-68.
Fujii S, Haraguchi TF, Tayasu I. (2021) Radiocarbon signature reveals that most springtails depend on carbon from living plants. Biology Letters 17: 20210353.
Tatsumi S, Matsuoka S, Fujii S, Makoto K, Osono T, Isbell F, Mori AS. (2021) Prolonged impacts of past agriculture and ungulate overabundance on soil fungal communities in restored forests. Environmental DNA 3: 930-939.
Fujii S, Shimada T, Nakamura S, Makino S, Okabe K. (2021) Soil fauna community assembled in the abandoned nests of Japanese wood mice. Journal of the Acarological Society of Japan 30: 1-4.
Mori AS, Cornelissen JHC, Fujii S, Okada K, Isbell F. (2020) A meta-analysis on decomposition quantifies afterlife effects of plant diversity as a global change driver. Nature Communications 11: 4547.
Fujii S, Berg MP, Cornelissen JHC. (2020) Living litter: dynamic trait spectra predict fauna composition. Trends in Ecology & Evolution 35: 886-896.
Vašutová M, Mleczko P, López-García A, Maček I, Boros G, Ševčík J, Fujii S, Hackenberger D, Tuf IH, Hornung E, Páll-Gergely B, Kjøller R. (2019) Taxi drivers: the role of animals in transporting mycorrhizal fungi. Mycorrhiza 29: 413-434.
Hishi T, Fujii S, Saitoh S, Yoshida T, Hasegawa M. (2019) Taxonomy, distribution and trait data sets of Japanese Collembola. Ecological Research 34: 444-445.
Andringa JI, Zuo J, Berg MP, Klein R, van't Veer J, de Geus R, de Beaumont M, Goudzwaard L, van Hal J, Broekman R, van Logtestijn RSP, Li Y, Fujii S, Lammers M, Hefting MM, Sass-Klaassen U, Cornelissen JHC. (2019) Combining tree species and decay stages to increase invertebrate diversity in dead wood. Forest Ecology and Management 441: 80-88.
Tanikawa T, Fujii S, Sun L, Hirano Y, Matsuda Y, Miyatani K, Doi R, Mizoguchi T, Maie N. (2018) Leachate from fine root litter is more acidic than leaf litter leachate: A 2.5-year laboratory incubation. Science of the Total Environment 645:179-191.
Fujii S, Cornelissen JHC, Berg MP, Mori AS. (2018) Tree leaf and root traits mediate soil faunal contribution to litter decomposition across an elevational gradient. Functional Ecology 32: 840-852.
Fujii S, Takeda H. (2017) Succession of soil microarthropod communities during the aboveground and belowground litter decomposition processes. Soil Biology and Biochemistry 110: 95-102.
Fujii S, Mori AS, Koide D, Makoto K, Matsuoka S, Osono T, Isbell F. (2017) Disentangling relationships between plant diversity and decomposition processes under forest restoration. Journal of Applied Ecology 54: 80-90.
Kasahara M, Fujii S, Tanikawa T, Mori AS. (2016) Ungulates decelerate litter decomposition by altering litter quality above and below ground. European Journal of Forest Research 135: 849-856.
Fujii S, Mori AS, Kominami Y, Tawa Y, Inagaki Y, Takanashi S, Takeda H. (2016) Differential utilization of root-derived carbon among collembolan species. Pedobiologia 59: 225-227.
Saitoh S, Aoyama H, Fujii S, Sunagawa H, Nagahama H, Akutsu M, Shinzato N, Kaneko N, Nakamori T. (2016) A quantitative protocol for DNA metabarcoding of springtails (Collembola). Genome 59: 705-723.
Mori AS, Isbell F, Fujii S, Makoto K, Matsuoka S, Osono T. (2016) Low multifunctional redundancy of soil fungal diversity at multiple scales. Ecology Letters 19: 249-259.
Fujii S, Makita N, Mori AS, Takeda H. (2016) Plant species control and soil faunal involvement in the processes of above- and below-ground litter decomposition. Oikos 125: 883-892.
Fujii S, Makita N, Mori AS, Takeda H. (2016) A stronger coordination of litter decomposability between leaves and fine roots for woody species in a warmer region. Trees - Structure and Function 30: 395-404.
Komatsu M, Yoshimura K, Fujii S, Yazaki K, Tobita H, Mizoguchi Y, Miyama T, Kominami Y, Yasuda Y, Yamanoi K, Kitao M. (2015) Estimation of ozone concentrations above forests using atmospheric observations at urban air pollution monitoring stations. Journal of Agricultural Meteorology 71: 202-210.
Makita N, Fujii S. (2015) Tree species effects on microbial respiration from decomposing leaf and fine root litter. Soil Biology and Biochemistry 88: 39-47.
Mori AS, Ota AT, Fujii S, Seino T, Kabeya D, Okamoto T, Ito MT, Kaneko N, Hasegawa M. (2015) Concordance and discordance between taxonomic and functional homogenization: Responses of soil mite assemblages to forest conversion. Oecologia 179: 527-535.
Mori AS, Shiono T, Haraguchi TF, Ota AT, Koide D, Ohgue T, Kitagawa R, Maeshiro R, ToeToeAung, Nakamori T, Hagiwara Y, Matsuoka S, Ikeda A, Hishi T, Hobara S, Mizumachi E, Frisch A, Thor G, Fujii S, Osono T, Gustafsson L. (2015) Functional redundancy of multiple forest taxa along an elevational gradient: predicting the consequences of non-random species loss. Journal of Biogeography 42: 1383-1396.
Aoyama H, Saitoh S, Fujii S, Nagahama H, Shinzato N, Kaneko N, Nakamori T. (2015) A rapid method of non-destructive DNA extraction from individual springtails (Collembola). Applied Entomology and Zoology 50: 419-425.
Mori AS, Fujii S, Kitagawa R, Koide D. (2015) Null model approaches to evaluating the relative role of different assembly processes in shaping ecological communities. Oecologia 178: 261-273.
Mori AS, Ota AT, Fujii S, Seino T, Kabeya D, Okamoto T, Ito MT, Kaneko N, Hasegawa M. (2015) Biotic homogenization and differentiation of soil faunal communities in the production forest landscape: Taxonomic and functional perspectives. Oecologia 177: 533-544.
Fujii S, Saitoh S, Takeda H. (2014) Effects of rhizospheres on the community composition of Collembola in a temperate forest. Applied Soil Ecology 83: 109-115.
Saitoh S, Fujii S, Takeda H. (2014) Effect of habitat structural complexity on collembolan communities. Ecological Research 29: 81-90.
Kitao M, Komatsu M, Hoshika Y, Yazaki K, Yoshimura K, Fujii S, Miyama T, Kominami Y. (2014) Seasonal ozone uptake by a warm-temperate mixed deciduous and evergreen broadleaf forest in western Japan estimated by the Penman-Monteith approach combined with a photosynthesis-dependent stomatal model. Environmental Pollution 184: 457-463.
Mori AS*, Fujii S*, Kurokawa H. (2014) Ecological consequences through responses of plant and soil communities to changing winter climate. Ecological Research 29: 547-559. (*Equal contribution)
Fujii S, Yamada A, Fukushima K, Saitoh S, Kitayama K, Takeda H. (2013) Relationships among distribution of fine roots, soil DOC concentration and Collembola. Plant Root 7: 21-27.
Fujii S, Takeda H. (2012) Succession of collembolan communities during decomposition of leaf and root litter: effects of litter type and position. Soil Biology and Biochemistry 54: 77-85.
Saitoh S, Fujii S, Takeda H. (2011) Evaluation of the bottom-up force of accumulated organic matter on microarthropods in a temperate forest floor. European Journal of Soil Biology 47: 409-413.
Fujii S, Takeda H. (2010) Dominant effects of litter substrate quality on the difference between leaf and root decomposition process above- and belowground. Soil Biology and Biochemistry 42: 2224-2230.
Hirano Y, Noguchi K, Ohashi M, Hishi T, Makita N, Fujii S, Finer L. (2009) A new method for placing and lifting root meshes for estimating fine root production in forest ecosystems. Plant Root 3: 26-31.
Fujii S, Kasuya N. (2008) Fine root biomass and morphology of Pinus densiflora under competitive stress by Chamaecyparis obtusa. Journal of Forest Research 13: 185-189.
藤井佐織. (2024)トビムシと樹木の根. In 日本樹木医学会 (編). 樹木医による樹木診断・治療事例集. pp. 98-99
藤井佐織. (2023) はたらく土の虫. 瀬谷出版. 156頁.
藤井佐織, 原口岳, 陀安一郎. (2022) 土壌動物は落葉分解者とは限らない-トビムシの放射性炭素同位体分析から判明-. Isotope News No.783: 33-35
藤井佐織. (2020) 土壌食物網と根. In 平野恭弘, 野口享太郎, 大橋瑞江 (編). 森の根の生態学. 共立出版. 分担執筆 3.6. pp. 211-221.
藤井佐織. (2019) 書評：実践土壌学シリーズ2 土壌生態学. 森林科学 85号: 48
藤井佐織. (2018) 日本土壌動物学会奨励賞をいただいて. どろのむし通信 No. 70: 6-7
長谷川元洋, 藤井佐織, 金田哲, 池田紘士, 菱拓雄, 兵藤不二夫, 小林真. (2017) 土壌動物をめぐる生態学的研究の最近の進歩. 日本生態学会誌 67: 95-118.
藤井佐織. (2017) XVII International Colloquium on Soil ZoologyとXIV International Colloquium on Apterygotaに参加して. どろのむし通信 No. 67: 12-13.
小松雅史, 吉村謙一, 藤井佐織, 矢崎健一, 溝口康子, 深山貴文, 小南裕志, 安田幸生, 山野井克己, 北尾光俊. (2014) 森林における対流圏オゾン濃度の推定. 関東森林研究 65(2): 165-168.
藤井佐織. (2012) 細根と土壌動物の相互作用. 森林科学 65号: 21-25.（特集「樹木の根」）
藤井佐織. (2012) XIII International Colloquium on Apterygota参加報告. 根の研究 21巻3号.